def test_operators_grad():
log << log.mg << "%-17s" % "<test_operators_grad>" << log.endl
w = np.array([0.5,-1.,0.2,0.1])
X = np.random.uniform(size=(15,3))
Y = np.random.uniform(size=(15,1))
for operator in ["exp", "log", "mod", "pow", "mult", "div"]:
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addInput()
c4 = cgraph.addNode("linear", [c1,c2,c3])
c4abs = cgraph.addNode("mod", [c4])
c5 = cgraph.addNode("sigmoid", [c2,c3,c4])
if operator in {"mult","div"}:
deps = [c4,c5]
elif operator in {"log","pow"}:
deps = [c4abs]
else:
deps = [c4]
cu = cgraph.addNode(operator, deps)
c6 = cgraph.addNode("linear", [cu,c5])
t1 = cgraph.addTarget()
o1 = cgraph.addObjective("mse", [c6,t1])
for node in cgraph.nodes():
node.params().set(
np.random.uniform(size=(node.params().size,)),
"float64")
for i in range(2):
if cu.params().size > 0:
cgrad = cu if i == 0 else c5
n_params = 1 if i == 0 else 4
else:
cgrad = c4 if i == 0 else c5
n_params = 4
# Evaluate graph
cgrad.params().set(w, "float64")
cgraph.feed(X, Y, str(X.dtype), str(Y.dtype))
mse = o1.vals("float64")[0]
# Analytical gradients
p4_id = cgrad.params().id
o1.grads().listParamSets()
g4 = o1.grads().vals(p4_id, "float64");
# Numerical gradients
h = 1e-8
for i in range(n_params):
wh = np.copy(w)
wh[i] += h
cgrad.params().set(wh, "float64")
cgraph.feed(X, Y, str(X.dtype), str(Y.dtype))
mseh = o1.vals("float64")[0]
g4i_num = (mseh-mse)/h
log << " %-4s / %-7s %+1.4e == %+1.4e ?" % (operator, cgrad.op, g4i_num, g4[i,0]) << log.flush
assert_equal(g4[i,0]-g4i_num, 0.0, 1e-4)
log << log.endl
def test_sigmoid():
log << log.mg << "%-17s" % "<test_sigmoid>" << log.flush
w = np.array([1.,-2.,0.5,0.4])
X = np.random.uniform(size=(15,3))
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addInput()
c4 = cgraph.addNode("sigmoid", [c1,c2,c3])
c4.params().set(w, "float64")
cgraph.evaluate(X, str(X.dtype))
y = c4.vals("float64")
y_check = 1./(1. + np.exp(-X.dot(w[0:3])-w[3]))
assert_equal(np.max(np.abs(y-y_check)), 0.0, 1e-10)
log << log.endl
def test_linear():
log << log.mg << "%-17s" % "<test_linear>" << log.flush
w = np.array([1.5,-2.5,0.3,0.1])
X = np.random.uniform(size=(15,3))
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addInput()
c4 = cgraph.addNode("linear", [c1,c2,c3])
c4.params().set(w, "float64")
cgraph.evaluate(X, str(X.dtype))
y = c4.vals("float64")
y_check = X.dot(w[0:3])+w[3]
assert_equal(np.max(np.abs(y-y_check)), 0.0, 1e-10)
log << log.endl
def test_input_grads():
log << log.mg << "%-17s" % "<test_input_grads>" << log.endl
X = np.random.uniform(size=(15,3))
Y = np.random.uniform(size=(15,1))
for operator in ["exp", "log", "mod", "pow", "mult", "div"]:
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addInput()
if operator in {"mult","div"}:
deps = [c2,c3]
elif operator in {"log","pow"}:
deps = [c1]
else:
deps = [c3]
cu = cgraph.addNode(operator, deps)
c4 = cgraph.addNode("linear", [c1,c2,c3])
c5 = cgraph.addNode("sigmoid", [c1,c2,c3,cu])
c6 = cgraph.addNode("mult", [c4,c5])
for node in cgraph.nodes():
node.params().set(
np.random.uniform(size=(node.params().size,)),
"float64")
h = 1e-8
for cgrad in [ c4, c5, c6 ]:
# Analytical
cgraph.evaluateInputGrads(X, str(X.dtype))
x = cgrad.vals("float64")
g = np.concatenate(
[ cgrad.input_grads().vals(j+1, "float64") for j in range(len(cgraph.inputs())) ],
axis=0).T # n_samples x n_inputs
for j in range(X.shape[1]):
# Numerical
Xh = np.copy(X)
Xh[:,j] = Xh[:,j] + h
cgraph.evaluate(Xh, str(Xh.dtype))
xh = cgrad.vals("float64")
g_num = (xh-x)/h
mean_rel_abserr = np.average(np.abs((g_num-g[:,j])/g_num))
log << " %-7s MRAE = %+1.4e" % (cgrad.op, mean_rel_abserr) << log.flush
for i in range(X.shape[0]):
assert_equal(g[i,j]-g_num[i], 0.0, 1e-6)
log << log.endl
def test_mse_grad():
log << log.mg << "%-17s" % "<test_mse_grad>" << log.endl
w = np.array([0.,-1.,0.2,0.1])
X = np.random.uniform(size=(15,3))
Y = np.random.uniform(size=(15,1))
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addInput()
c4 = cgraph.addNode("linear", [c1,c2,c3])
c5 = cgraph.addNode("sigmoid", [c2,c3,c4])
c6 = cgraph.addNode("linear", [c4,c5])
t1 = cgraph.addTarget()
o1 = cgraph.addObjective("mse", [c6,t1])
for node in cgraph.nodes():
node.params().set(
np.random.uniform(size=(node.params().size,)),
"float64")
cgrads = [c4,c5]
for i in range(2):
cgrad = cgrads[i]
# Evaluate graph
cgrad.params().set(w, "float64")
cgraph.feed(X, Y, str(X.dtype), str(Y.dtype))
y = cgrad.vals("float64")
y_check = 1./(1. + np.exp(-X.dot(w[0:3])-w[3]))
mse = o1.vals("float64")[0]
# Analytical gradients
p4_id = cgrad.params().id
o1.grads().listParamSets()
g4 = o1.grads().vals(p4_id, "float64");
# Numerical gradients
h = 1e-8
for i in range(len(w)):
wh = np.copy(w)
wh[i] += h
cgrad.params().set(wh, "float64")
cgraph.feed(X, Y, str(X.dtype), str(Y.dtype))
mseh = o1.vals("float64")[0]
g4i_num = (mseh-mse)/h
log << " %-7s %+1.4e == %+1.4e ?" % (cgrad.op, g4i_num, g4[i,0]) << log.flush
assert_equal(g4[i][0]-g4i_num, 0.0, 1e-7)
log << log.endl
def test_xent():
log << log.mg << "%-17s" % "<test_xent>" << log.flush
w = np.array([0.,-1.,0.2,0.1])
X = np.random.uniform(size=(15,3))
Y = 1.*np.random.randint(0, 2, size=(15,1))
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addInput()
c4 = cgraph.addNode("sigmoid", [c1,c2,c3])
t1 = cgraph.addTarget()
o1 = cgraph.addObjective("xent", [c4,t1])
c4.params().set(w, "float64")
cgraph.feed(X, Y, str(X.dtype), str(Y.dtype))
y = c4.vals("float64")
y_check = 1./(1. + np.exp(-X.dot(w[0:3])-w[3]))
xent = o1.vals("float64")
xent_check = -1./Y.shape[0]*np.sum(Y[:,0]*np.log(y_check) + (1.-Y[:,0])*np.log(1.-y_check))
assert_equal(np.max(np.abs(y-y_check)), 0.0, 1e-10)
assert_equal(xent_check-xent, 0.0, 1e-10)
log << log.endl
def test_mse():
log << log.mg << "%-17s" % "<test_mse>" << log.flush
w = np.array([0.,-1.,0.2,0.1])
X = np.random.uniform(size=(15,3))
Y = np.random.uniform(size=(15,1))
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addInput()
c4 = cgraph.addNode("sigmoid", [c1,c2,c3])
t1 = cgraph.addTarget()
o1 = cgraph.addObjective("mse", [c4,t1])
c4.params().set(w, "float64")
cgraph.feed(X, Y, str(X.dtype), str(Y.dtype))
y = c4.vals("float64")
y_check = 1./(1. + np.exp(-X.dot(w[0:3])-w[3]))
mse = o1.vals("float64")
mse_check = np.sum((y_check-Y[:,0])**2)/Y.shape[0]
assert_equal(np.max(np.abs(y-y_check)), 0.0, 1e-10)
assert_equal(mse_check-mse, 0.0, 1e-10)
log << log.endl
def test_misc():
log << log.mg << "%-17s" % "<test_misc>" << log.flush
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addInput()
c4 = cgraph.addNode("sigmoid", [c1,c2,c3])
c5 = cgraph.addNode("linear", [c1,c4])
X = np.random.uniform(size=(15,3))
w4 = np.array([0.,-1.,0.2,0.1])
w5 = np.array([-0.1,0.5,1.2])
c4.params().set(w4, "float64")
c5.params().set(w5, "float64")
cgraph.evaluate(X, "float64")
y4 = c4.vals("float64")
y5 = c5.vals("float64")
y4_check = 1./(1. + np.exp(-X.dot(w4[0:3])-w4[3]))
y5_check = w5[0]*X[:,0] + w5[1]*y4_check + w5[2]
assert_equal(np.max(np.abs(y4-y4_check)), 0.0, 1e-10)
assert_equal(np.max(np.abs(y5-y5_check)), 0.0, 1e-10)
log << log.endl
def test_operators():
log << log.mg << "%-17s" % "<test_operators>" << log.flush
cgraph = soap.CGraph()
c1 = cgraph.addInput()
c2 = cgraph.addInput()
c3 = cgraph.addNode("exp", [c1])
c4 = cgraph.addNode("log", [c1])
c5 = cgraph.addNode("mod", [c2])
c6 = cgraph.addNode("pow", [c1])
c7 = cgraph.addNode("mult", [c1,c2])
c8 = cgraph.addNode("div", [c1,c2])
X1 = np.random.uniform(size=(15,1))
X2 = np.random.uniform(-1,1,size=(15,1))
X = np.concatenate([X1,X2], axis=1)
for n in range(3):
for params in cgraph.params:
rnd_vals = np.random.uniform(-1, 1, size=(params.size,))
params.set(rnd_vals, str(rnd_vals.dtype))
cgraph.evaluate(X, str(X.dtype))
v3 = c3.vals("float64")
v4 = c4.vals("float64")
v5 = c5.vals("float64")
v6 = c6.vals("float64")
v7 = c7.vals("float64")
v8 = c8.vals("float64")
v3c = np.exp(c3.params().vals("float64")[0]*X1[:,0])
v4c = np.log(X1[:,0])
v5c = np.abs(X2[:,0])
v6c = X1[:,0]**c6.params().vals("float64")[0]
v7c = X1[:,0]*X2[:,0]
v8c = X1[:,0]/X2[:,0]
assert_equal(np.max(np.abs(v3-v3c)), 0.0, 1e-10)
assert_equal(np.max(np.abs(v4-v4c)), 0.0, 1e-10)
assert_equal(np.max(np.abs(v5-v5c)), 0.0, 1e-10)
assert_equal(np.max(np.abs(v6-v6c)), 0.0, 1e-10)
assert_equal(np.max(np.abs(v7-v7c)), 0.0, 1e-10)
assert_equal(np.max(np.abs(v8-v8c)), 0.0, 1e-10)
log << log.endl
def translate_fgraph(fgraph):
cgraph = soap.CGraph()
node_map = {}
for fidx, f in enumerate(fgraph):
log << log.back << "Converting node %d/%d" % (fidx + 1,
len(fgraph)) << log.flush
op = f.op_tag
inputs = [node_map[p.expr] for p in f.getParents()]
if f.is_root:
c1 = cgraph.addInput()
c2 = cgraph.addNode("linear", [c1])
c2.setParamsConstant(True)
set_params(c2, [1.0 * f.prefactor * f.unit_prefactor, 0.0])
node_map[f.expr] = c2
elif f.op_tag == "e":
c1 = cgraph.addNode("linear", inputs)
c2 = cgraph.addNode("exp", [c1])
set_params(c1, [1.0, 0.0])
set_params(c2, [1.0])
node_map[f.expr] = c2
elif f.op_tag == "l":
c1 = cgraph.addNode("linear", inputs)
c2 = cgraph.addNode("mod", [c1])
c3 = cgraph.addNode("log", [c2])
set_params(c1, [1.0, 0.0])
node_map[f.expr] = c3
elif f.op_tag == "|":
c1 = cgraph.addNode("linear", inputs)
c2 = cgraph.addNode("mod", [c1])
set_params(c1, [1.0, 0.0])
node_map[f.expr] = c2
elif f.op_tag == "s":
c1 = cgraph.addNode("linear", inputs)
c2 = cgraph.addNode("mod", [c1])
c3 = cgraph.addNode("pow", [c2])
set_params(c1, [1.0, 0.0])
set_params(c3, [0.5])
node_map[f.expr] = c3
elif f.op_tag == "r":
c1 = cgraph.addNode("linear", inputs)
c2 = cgraph.addNode("pow", [c1])
# Cannot optimize exponent as inputs
# can be negative, hence:
c2.setParamsConstant(True)
set_params(c1, [1.0, 0.0])
set_params(c2, [-1.])
node_map[f.expr] = c2
elif f.op_tag == "2":
c1 = cgraph.addNode("linear", inputs)
c2 = cgraph.addNode("mod", [c1])
c3 = cgraph.addNode("pow", [c2])
set_params(c1, [1.0, 0.0])
set_params(c3, [2.0])
node_map[f.expr] = c3
elif f.op_tag == "+":
c1 = cgraph.addNode("linear", inputs)
set_params(c1, [1.0, 1.0, 0.0])
node_map[f.expr] = c1
elif f.op_tag == "-":
c1 = cgraph.addNode("linear", inputs)
set_params(c1, [1.0, -1.0, 0.0])
node_map[f.expr] = c1
elif f.op_tag == ":":
c1 = cgraph.addNode("linear", inputs[0:1])
c2 = cgraph.addNode("linear", inputs[1:2])
c3 = cgraph.addNode("div", [c1, c2])
set_params(c1, [1.0, 0.0])
set_params(c2, [1.0, 0.0])
node_map[f.expr] = c3
elif f.op_tag == "*":
c1 = cgraph.addNode("linear", inputs[0:1])
c2 = cgraph.addNode("linear", inputs[1:2])
c3 = cgraph.addNode("mult", [c1, c2])
set_params(c1, [1.0, 0.0])
set_params(c2, [1.0, 0.0])
node_map[f.expr] = c3
log << log.endl
log << "=> Created graph with %d nodes" % cgraph.size << log.endl
return cgraph, node_map
