def listdata(options):
if(options.runname == None):
options.runname = '/'
if(options.infile == None):
print "Specify the in file (--infile filename)"
exit()
extension = os.path.splitext(options.infile)
extension = extension[1]
if extension != '.h5':
print "Can only lsit .h5 files: " + options.infile
exit()
theReader = SofiePyTableAccess(options.infile, runName='/')
runs = theReader.getRuns(options.runname)
runs.sort()
for run in runs:
logging.debug('Setting Run: ' + run);
splitRun = os.path.split(run);
theRun, theNode = splitRun
theReader.setRunName(theRun)
meta = theReader.getRunMeta(options.runname)
if meta:
run, description, timestamp = meta[0]
else:
run, description, timestamp = None, None, None
print "\n\n==============================="
print "==============================="
print "RUN: " + theRun + '/' + theNode + "\n-------------------------------"
if theNode == RunMetaName:
print "Description: " + str(description)
print "Time: " + time.strftime('%D, %H:%M:%S',
time.localtime(timestamp))
elif options.verbose:
theReader.setTable(theNode, '')
x = DUMPLINLINES
for row in theReader:
print str(row).lstrip('(').rstrip(')')
if x == 0:
print '.... ONLY THE FIRST ' + \
str(DUMPLINLINES) + ' ENTRIES ARE PRINTED ....'
break;
x -= 1;
else:
print "\n\n==============================="
print "==============================="
print "RUN: " + options.runname + ' DOES NOT EXIST' + \
"\n-------------------------------"
theReader.close()
def exportdata(options):
"""
Function used to export data.
"""
print '\n-------------------------------\nExporting information' + \
'\n-------------------------------\n'
if(options.runname == None):
exportpath = '/'
else:
exportpath = options.runname
if(options.infile == None):
print "Specify the in file (--infile filename)"
exit()
if(options.outdir == None):
print "Specify the out file (--exportdir directoryname)"
exit()
extension = os.path.splitext(options.infile)
extension = extension[1]
if extension != '.h5':
print "Can only export .h5 files: " + options.infile
exit()
else:
theReader = SofiePyTableAccess(options.infile, runName='/')
theRuns = theReader.getRuns(exportpath)
for run in theRuns:
exportFile = os.sep.join([options.outdir] + run.split('/')) + '.csv'
if not os.path.isdir(os.path.dirname(exportFile)):
os.makedirs(os.path.dirname(exportFile))
if os.path.isfile(exportFile):
os.unlink(exportFile)
print '\n-------------------------------\n' + \
'Exporting: ' + run + ' to ' + str(exportFile)
theReader.setTable(run, '')
fieldNames = theReader.getTableStructure(asList=True)
csvWriter = SofieCsvAccess(exportFile, fieldNames)
for row in theReader:
logging.debug("Read New Row")
parsed = csv_sample_interpret(row)
csvWriter.write(parsed)
#aparsedwritercsv = SofieCsvAccess(csvOutParsed)
csvWriter.close()
theReader.close()
def test_meta(self):
writer = SofiePyTableAccess('simple-test-data.h5', '/test')
self.assertEqual(writer.getRuns('/'), ['/RunMeta'])
data = writer.getRunMeta('test')
logging.debug('Meta Data for the table:' + str(data))
self.assertEqual(len(data),8)
writer.setRunMeta('ourRun', 'The Description')
data = writer.getRunMeta('ourRun')
self.assertEqual(len(data), 8)
logging.debug('The Data:'+str(data))
self.assertEqual('ourRun', data['runName'])
self.assertEqual('The Description', data['runNotes'])
self.assertTrue(writer.setRunMeta('ourRun', 'The New Description'))
data = writer.getRunMeta('ourRun')
logging.debug(data)
self.assertEqual(len(data), 8)
logging.debug('The Data:'+str(data))
self.assertEqual('ourRun', data['runName'])
self.assertEqual('The New Description', data['runNotes'])
data = writer.getRunMeta('test')
self.assertEqual(len(data), 8)
writer = SofiePyTableAccess('simple-test-data.h5', runName='/testagain',
description='our description again')
data = writer.getRunMeta('/testagain')
self.assertEqual(len(data), 8)
self.assertEqual('testagain', data['runName'])
self.assertEqual('our description again', data['runNotes'])
data = writer.getRunMeta('testagain')
self.assertEqual(len(data), 8)
self.assertEqual('testagain', data['runName'])
self.assertEqual('our description again', data['runNotes'])
self.assertIsNone(writer.setRunName('/'));
self.assertIsNone(writer.setRunName('/'));
self.assertIsNone(writer.setTable('/', ''));