def test_getBagSubDirectory(self):
self.assertEqual(getBagSubDirectory(""), "/" + BAGSUBDIRECTORY)
self.assertEqual(getBagSubDirectory("blah"), "/blah/" + BAGSUBDIRECTORY)
self.assertEqual(getDefaultBagFile("blah"), "/blah/" + USBCAMTMPFILE.replace(".", ""))
self.assertEqual(
getDefaultBagFile(getBagSubDirectory("blah")),
"/blah/" + BAGSUBDIRECTORY + "/" + USBCAMTMPFILE.replace(".", ""),
)
def exportBagData(filename,runName):
""" Exports the bag file from the sofiehdfformat file. """
logging.debug(runName)
totalRun = getDefaultBagFile(getBagSubDirectory(runName))
logging.debug(totalRun)
outFileName = filename+'_'+getDefaultBagFileName()
exportFile(filename,totalRun,outFileName)
return outFileName
def importdata(infile, outfile, runName, description, shouldParse, shouldCsv):
"""
Standard function used to import data into the file
"""
print '\n-------------------------------\nImporting information' + \
'\n-------------------------------\n'
if(infile == None):
print "Specify the in file (--infile filename)"
exit()
if(outfile == None):
print "Specify the out file (--outfile filename)"
exit()
if(runName == None):
print "Specify the rest run name (--runName 01CornerTestRun) "
exit()
extension = os.path.splitext(infile)
infileName = extension[0]
extension = extension[1]
csvOut = infileName + '-sofie.csv'
csvOutParsed = infileName + '-sofie-parsed.csv'
if extension == '.gce':
runNameExtended = getGESubDirectory(runName)
theOriginalFile = GE.open(infile)
parser = ant_sample
parser_interpret = ant_sample_interpret
theWriter = AntRawDataAccess(outfile,
runName=runNameExtended,
description=description)
elif extension == '.ant':
runNameExtended = getSparkSubDirectory(runName)
theOriginalFile = SF.open(infile)
parser = ant_sample
parser_interpret = ant_sample_interpret
theWriter = AntRawDataAccess(outfile,
runName=runNameExtended,
description=description)
elif extension == '.c3d' or extension == '.C3D':
runNameExtended = getC3DSubDirectory(runName)
theOriginalFile = C3.open(infile)
parser = c3d_sample
parser_interpret = c3d_sample_interpret
theWriter = C3DDataAccess(outfile,
runName=runNameExtended,
description=description,
allowDuplicates=True,
videoSamplingRate=theOriginalFile.getVideoSamplingRate(),
videoFrames=theOriginalFile.getVideoFrames(),
scale=theOriginalFile.getScale())
elif extension == '.csv':
runNameExtended = getCSVImportSubDirectory(runName)
theOriginalFile = scf.open(infile)
parser = csv_sample
parser_interpret = csv_sample_interpret
theWriter = SofieCsvPyTableAccess(outfile,
runName=runNameExtended,
description=description,
fieldNames=theOriginalFile.getTableStructure())
elif extension == '.tab':
runNameExtended = getAdamsSubDirectory(runName)
theOriginalFile = adams.open(infile)
parser = csv_sample
parser_interpret = csv_sample_interpret
theWriter = SofieCsvPyTableAccess(outfile,
runName=runNameExtended,
description=description,
fieldNames=theOriginalFile.getTableStructure())
elif extension == '.bag':
runNameExtended = getBagSubDirectory(runName)
theWriter = SofieCsvPyTableAccess(outfile,
runName=runNameExtended,
description=description,
fieldNames=['A HACK'])
theWriter.writeFile(infile)
print '\n-------------------------------\n{0} Saved to file'.format(outfile)
theWriter.close()
return
else:
raise FileNotSupportedException('File not Supported: ' + str(extension))
print '\n-------------------------------\nSaving to file',
print outfile
if shouldParse:
print 'File is going to be parsed'
print 'CSV Parsed File: ' + csvOutParsed
if shouldCsv:
print 'CSV File: ' + csvOut + '\n-----------------------------------\n'
awritercsv = SofieCsvAccess(csvOut)
for theLine in theOriginalFile:
logging.debug(theLine)
try:
parsedLine = parser(theLine)
except Exception, e:
print 'Parsing Failed: ' + str(e)
continue
try:
logging.debug(parsedLine)
theWriter.write(parsedLine)
print '.',
if shouldCsv:
awritercsv.write(parsedLine)
print 'c',
except AntRawParserLengthNotCorrect, e:
print 'x'
