def __init__(self, neo_reader, segment_index, use_natural_unit_ids, t_start, sampling_freq):
BaseSortingSegment.__init__(self)
self.neo_reader = neo_reader
self.segment_index = segment_index
self.use_natural_unit_ids = use_natural_unit_ids
self._t_start = t_start
self._sampling_freq = sampling_freq
self._natural_ids = None
def __init__(self, path, sampling_frequency):
BaseSortingSegment.__init__(self)
self._path = path
self._sampling_frequency = sampling_frequency
def __init__(self, multisortingcomparison):
BaseSortingSegment.__init__(self)
self._msc = multisortingcomparison
def __init__(self, oldapi_sorting_extractor):
BaseSortingSegment.__init__(self)
self._oldapi_sorting_extractor = oldapi_sorting_extractor
self._kwargs = {'oldapi_sorting_extractor': oldapi_sorting_extractor}
def __init__(self, spiketrains):
BaseSortingSegment.__init__(self)
# spiketrains is a 2 columns
self._spiketrains = spiketrains
def __init__(self, unit_ids, spike_times, spike_ids):
BaseSortingSegment.__init__(self)
# spike_times is a dict
self._unit_ids = list(unit_ids)
self._spike_times = spike_times
self._spike_ids = spike_ids
def __init__(self, units_dict):
BaseSortingSegment.__init__(self)
for unit_id, times in units_dict.items():
assert times.dtype.kind == 'i', 'numpy array of spike times must be integer'
assert np.all(np.diff(times) >= 0), 'unsorted times'
self._units_dict = units_dict
def __init__(self, nwbfile, sampling_frequency, timestamps):
BaseSortingSegment.__init__(self)
self._nwbfile = nwbfile
self._sampling_frequency = sampling_frequency
self._timestamps = timestamps
def __init__(self, all_spikes, all_clusters):
BaseSortingSegment.__init__(self)
self._all_spikes = all_spikes
self._all_clusters = all_clusters
def __init__(self, unit_ids, spiketrains):
BaseSortingSegment.__init__(self)
self._unit_ids = list(unit_ids)
self._spiketrains = spiketrains
def __init__(self, spiketrains):
BaseSortingSegment.__init__(self)
# spiketrains is dict
self._spiketrains = spiketrains
def __init__(self, firings):
self._firings = firings
self._max_channels = self._firings[0, :]
self._spike_times = self._firings[1, :]
self._labels = self._firings[2, :]
BaseSortingSegment.__init__(self)
def __init__(self, spike_clusters, spike_times, sampling_frequency):
self._spike_clusters = spike_clusters
self._spike_times = spike_times
self._sampling_frequency = sampling_frequency
BaseSortingSegment.__init__(self)
def __init__(self, units_dict):
BaseSortingSegment.__init__(self)
for unit_id, times in units_dict.items():
assert times.dtype.kind == 'i', 'numpy array of spike times must be integer'
self._units_dict = units_dict
def __init__(self, oldapi_sorting_extractor):
BaseSortingSegment.__init__(self)
self._old_api_sorting_extractor = oldapi_sorting_extractor
def __init__(self, spike_clusters):
self._spike_clusters = spike_clusters
BaseSortingSegment.__init__(self)
def __init__(self, all_spikes):
BaseSortingSegment.__init__(self)
self._all_spikes = all_spikes
