def test_transform(self):
read_data = ReadData()
loaded_data = read_data.read_data_and_set_variable_settings("../Dataset/00-91-Drugs-All-In-One-File.csv", "../Dataset/VariableSetting.csv")
data_manager = DataManager(normalizer=None)
data_manager.set_data(loaded_data)
data_manager.split_data_into_train_valid_test_sets()
model = svm.SVR()
velocity = Velocity()
velocity_matrix = velocity.create_first_velocity()
# define the first population
# validation of a row generating random row for
population = Population(velocity_matrix=velocity_matrix)
population.create_first_population()
debpso = DEBPSO(population.population_matrix[0])
debpso.fit(data_manager.inputs[SplitTypes.Train], data_manager.targets[SplitTypes.Train])
data_manager.transformed_input[SplitTypes.Train] = debpso.transform(data_manager.inputs[SplitTypes.Train])
print("Population 0 row sum ", population.population_matrix[0].sum())
print("Selected feature descriptors",debpso.sel_descriptors_for_curr_population)
print("Transformed array", data_manager.transformed_input[SplitTypes.Train])
def test_transform(self):
read_data = ReadData()
loaded_data = read_data.read_data_and_set_variable_settings(
"../Dataset/00-91-Drugs-All-In-One-File.csv",
"../Dataset/VariableSetting.csv")
data_manager = DataManager(normalizer=None)
data_manager.set_data(loaded_data)
data_manager.split_data_into_train_valid_test_sets()
model = svm.SVR()
velocity = Velocity()
velocity_matrix = velocity.create_first_velocity()
# define the first population
# validation of a row generating random row for
population = Population(velocity_matrix=velocity_matrix)
population.create_first_population()
debpso = DEBPSO(population.population_matrix[0])
debpso.fit(data_manager.inputs[SplitTypes.Train],
data_manager.targets[SplitTypes.Train])
data_manager.transformed_input[SplitTypes.Train] = debpso.transform(
data_manager.inputs[SplitTypes.Train])
print("Population 0 row sum ", population.population_matrix[0].sum())
print("Selected feature descriptors",
debpso.sel_descriptors_for_curr_population)
print("Transformed array",
data_manager.transformed_input[SplitTypes.Train])
def test_fit(self):
#file_path = "../Dataset/00-91-Drugs-All-In-One-File.csv"
#loaded_data = FileManager.load_file(file_path)
read_data = ReadData()
loaded_data = read_data.read_data_and_set_variable_settings("../Dataset/00-91-Drugs-All-In-One-File.csv", "../Dataset/VariableSetting.csv")
data_manager = DataManager(normalizer=None)
data_manager.set_data(loaded_data)
data_manager.split_data_into_train_valid_test_sets()
model = svm.SVR()
velocity = Velocity()
velocity_matrix = velocity.create_first_velocity()
# define the first population
# validation of a row generating random row for
population = Population(velocity_matrix=velocity_matrix)
population.create_first_population()
debpso = DEBPSO(population.population_matrix[1])
debpso.fit(data_manager.inputs[SplitTypes.Train], data_manager.targets[SplitTypes.Train])
def test_fit(self):
#file_path = "../Dataset/00-91-Drugs-All-In-One-File.csv"
#loaded_data = FileManager.load_file(file_path)
read_data = ReadData()
loaded_data = read_data.read_data_and_set_variable_settings(
"../Dataset/00-91-Drugs-All-In-One-File.csv",
"../Dataset/VariableSetting.csv")
data_manager = DataManager(normalizer=None)
data_manager.set_data(loaded_data)
data_manager.split_data_into_train_valid_test_sets()
model = svm.SVR()
velocity = Velocity()
velocity_matrix = velocity.create_first_velocity()
# define the first population
# validation of a row generating random row for
population = Population(velocity_matrix=velocity_matrix)
population.create_first_population()
debpso = DEBPSO(population.population_matrix[1])
debpso.fit(data_manager.inputs[SplitTypes.Train],
data_manager.targets[SplitTypes.Train])
def test_fit(self):
file_path = "../Dataset/00-91-Drugs-All-In-One-File.csv"
loaded_data = FileManager.load_file(file_path)
data_manager = DataManager(normalizer=None)
data_manager.set_data(loaded_data)
data_manager.split_data_into_train_valid_test_sets(test_split=0.15,
train_split=0.70)
model = svm.SVR()
velocity = Velocity()
velocity_matrix = velocity.create_first_velocity()
# define the first population
# validation of a row generating random row for
population = Population(velocity_matrix=velocity_matrix)
population.create_first_population()
debpso = DEBPSO(population.population_matrix[1])
debpso.fit(data_manager.inputs[SplitTypes.Train],
data_manager.targets[SplitTypes.Train])
print("Population 1 row sum ", population.population_matrix[1].sum())
print("Selected feature descriptors",
debpso.sel_descriptors_for_curr_population)
def test_fit(self):
file_path = "../Dataset/00-91-Drugs-All-In-One-File.csv"
loaded_data = FileManager.load_file(file_path)
data_manager = DataManager(normalizer=None)
data_manager.set_data(loaded_data)
data_manager.split_data_into_train_valid_test_sets(test_split=0.15, train_split=0.70)
model = svm.SVR()
velocity = Velocity()
velocity_matrix = velocity.create_first_velocity()
# define the first population
# validation of a row generating random row for
population = Population(velocity_matrix=velocity_matrix)
population.create_first_population()
debpso = DEBPSO(population.population_matrix[1])
debpso.fit(data_manager.inputs[SplitTypes.Train], data_manager.targets[SplitTypes.Train])
print("Population 1 row sum ", population.population_matrix[1].sum())
print("Selected feature descriptors",debpso.sel_descriptors_for_curr_population)
from FileLoader import FileLoader
from DataManager import DataManager
from src.Population import Population
file_path = "../Dataset/00-91-Drugs-All-In-One-File.csv"
loaded_data = FileLoader.load_file(file_path)
data_manager = DataManager(normalizer=None)
data_manager.create_first_population(loaded_data)
data_manager.split_data_into_train_valid_test_sets(test_split=0.15, train_split=0.70)
population = Population()
population.create_first_population()
for i in range (1,50):
print("row", i, population.population_matrix[i].sum())
def create_first_population(self):
population = Population(velocity_matrix=self.velocity_matrix)
self.population_matrix = population.create_first_population()
self.local_best_matrix = np.copy(self.population_matrix)
from FileLoader import FileLoader
from DataManager import DataManager
from src.Population import Population
file_path = "../Dataset/00-91-Drugs-All-In-One-File.csv"
loaded_data = FileLoader.load_file(file_path)
data_manager = DataManager(normalizer=None)
data_manager.create_first_population(loaded_data)
data_manager.split_data_into_train_valid_test_sets(test_split=0.15,
train_split=0.70)
population = Population()
population.create_first_population()
for i in range(1, 50):
print("row", i, population.population_matrix[i].sum())
def create_first_population(self):
population = Population(velocity_matrix=self.velocity_matrix)
self.population_matrix = population.create_first_population()
self.local_best_matrix = np.copy(self.population_matrix)
