def __init__(self, value1, value2, value3, value4, value5, value6, value7,
value8, value9, value10, value11, value12, value13, value14,
findcontour_thres, contour_dilationpara, cell_region_opening,
cell_region_closing, saving_dir):
# Settings for sample stage movement
self.ludlStage = LudlStage("COM6")
self.UI_row_start_stagescan = value1
self.UI_row_end_stagescan = value2
self.UI_column_start_stagescan = value3
self.UI_column_end_stagescan = value4
self.UI_step_stagescan = value5
# Settings for Daq
self.samplingrate = value6
self.analogsignals = value7
# self.PMT_data_index_array = PMT_data_index_array
self.digitalsignals = value8
self.readinchannels = value9
# Settings for image analysis and selection
self.selected_num = value10
self.smallestsize = value11
self.opening_factor = value12
self.closing_factor = value13
self.binary_adaptive_block_size = value14
self.findcontour_thres = findcontour_thres
self.contour_dilationpara = contour_dilationpara
self.cell_region_opening = cell_region_opening
self.cell_region_closing = cell_region_closing
self.saving_dir = saving_dir
def __init__(self, value1, value2, value3, value4, value5, value6, value7, value8, value9, value10, value11, value12, value13):
# Settings for stage scan
self.ludlStage = LudlStage("COM7")
self.UI_row_start_stagescan = value1
self.UI_row_end_stagescan = value2
self.UI_column_start_stagescan = value3
self.UI_column_end_stagescan = value4
self.UI_step_stagescan = value5
self.UI_Daq_sample_rate_stagescan = value6
self.UI_voltXMin_stagescan = value7
self.UI_voltXMax_stagescan = value8
self.UI_voltYMin_stagescan = value9
self.UI_voltYMax_stagescan = value10
self.UI_Value_xPixels_stagescan = value11
self.UI_Value_yPixels_stagescan = value12
self.UI_Value_averagenum_stagescan = value13
def __init__(self, RoundQueueDict, RoundCoordsDict, GeneralSettingDict,
*args, **kwargs):
super().__init__(*args, **kwargs)
self.RoundQueueDict = RoundQueueDict
self.RoundCoordsDict = RoundCoordsDict
self.GeneralSettingDict = GeneralSettingDict
self.ludlStage = LudlStage("COM6")
self.PMTimageDict = {}
for i in range(int(len(self.RoundQueueDict) /
2)): # initial the nested PMTimageDict dictionary.
self.PMTimageDict['RoundPackage_{}'.format(i + 1)] = {}
self.clock_source = 'Dev1 as clock source' # Should be set by GUI.
self.scansavedirectory = self.GeneralSettingDict['savedirectory']
def __init__(self, GeneralSettingDict, RankedAllCellProperties,
FinalMergedCoords, IndexLookUpCellPropertiesDict, PMTimage,
MatdisplayFigureTopGuys, *args, **kwargs):
super().__init__(*args, **kwargs)
self.GeneralSettingDict = GeneralSettingDict
self.RankedAllCellProperties = RankedAllCellProperties
self.CurrentPos = FinalMergedCoords
self.IndexLookUpCellPropertiesDict = IndexLookUpCellPropertiesDict
self.ShowTopCellImg = PMTimage
self.MatdisplayFigureTopGuys = MatdisplayFigureTopGuys
self.IndexLookUpCellPropertiesDictRow = self.IndexLookUpCellPropertiesDict[
'row_{}_column_{}'.format(self.CurrentPos[0],
self.CurrentPos[1])][0]
self.IndexLookUpCellPropertiesDictCol = self.IndexLookUpCellPropertiesDict[
'row_{}_column_{}'.format(self.CurrentPos[0],
self.CurrentPos[1])][1]
self.ludlStage = LudlStage("COM6")
# -*- coding: utf-8 -*-
"""
Created on Mon Feb 18 11:42:50 2019
@author: lhuismans
"""
import time
from stage import LudlStage
#import visa
#First initialize the stage, the correct COM-port has to be specified. I think you can find the COM# under device manager.
ludlStage = LudlStage("COM6")
#ludlStage.send_end='True'
#ludlStage.delay = 0.2
#ludlStage.baud_rate=9600
#ludlStage.read_termination = '\r'
#ludlStage.write_termination='\r'
#Now the stage is initialized functions can be past to it. In the stage.py file each function is explained and it is specified what parameters it takes.
#ludlStage.Joystick(True)
#ludlStage.timeout = 0.1
#ludlStage.delay = 0.1
i= 0
j= 0
ludlStage.moveAbs(i,j)
#ludlStage.moveRel(i,j)
#time.sleep(1)
ii, jj =ludlStage.getPos() #j increase = fov in labview shifts down
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.ludlStage = LudlStage("COM6")
def __init__(self, xRel, yRel, *args, **kwargs):
super().__init__(*args, **kwargs)
self.ludlStage = LudlStage("COM6")
self.xRel = xRel
self.yRel = yRel