def intensities(self, codebook=None) -> IntensityTable:
if codebook is None:
codebook = self.codebook()
intensities = IntensityTable.synthetic_intensities(
codebook, self.n_z, self.height, self.width, self.n_spots,
self.mean_fluor_per_spot, self.mean_photons_per_fluor)
assert intensities.dtype == np.float32 and intensities.max() <= 1
return intensities
def testing_data():
np.random.seed(1)
codebook = test_utils.codebook_array_factory()
num_z, height, width = 3, 4, 5
intensities = IntensityTable.synthetic_intensities(codebook,
num_z=num_z,
height=height,
width=width,
n_spots=4)
return intensities
def synthetic_intensity_table(loaded_codebook) -> IntensityTable:
return IntensityTable.synthetic_intensities(loaded_codebook, n_spots=2)
