Ejemplo n.º 1
0
def base_model():
    """
    Channel
    """
    g=unstructured_grid.UnstructuredGrid(max_sides=4)
    g.add_rectilinear([0,0],[1000,100],21,3)
    
    g.add_cell_field('depth',-6*np.ones(g.Ncells()))

    model=sun_driver.SuntansModel()
    model.load_template('point_source_test.dat')
    model.set_grid(g)
    model.run_start=np.datetime64("2018-01-01 00:00")
    model.run_stop =np.datetime64("2018-01-05 00:00")

    dt=np.timedelta64(600,'s')
    times=np.arange(model.run_start-dt,model.run_stop+2*dt,dt)
    secs=(times-times[0])/np.timedelta64(1,'s')
    eta0=-1
    eta_bc=sun_driver.StageBC(name="eta_bc",
                              geom=np.array([ [0,0],
                                              [0,100]]),
                              z=eta0)

    model.add_bcs(eta_bc)
    model.add_bcs( [sun_driver.ScalarBC(parent=eta_bc,scalar="S",value=34),
                    sun_driver.ScalarBC(parent=eta_bc,scalar="T",value=15)] )

    model.set_run_dir('rundata_met_3d', mode='pristine')
    model.projection='EPSG:26910'
    model.num_procs=1 # test single first
    model.config['dt']=120
    model.config['ntout']=5
    model.config['Cmax']=30
    model.config['Nkmax']=10
    model.config['stairstep']=0
    model.config['mergeArrays']=0

    return model
Ejemplo n.º 2
0
def base_model_setup(L=100, dx=10):
    g = unstructured_grid.UnstructuredGrid(max_sides=4)
    g.add_rectilinear([0, 0], [L, 10], 1 + int(L / dx), 2)

    g.add_cell_field('depth', -6 * np.ones(g.Ncells()))

    model = sun_driver.SuntansModel()
    model.num_procs = 1
    model.load_template('point_source_test.dat')
    model.set_grid(g)
    model.run_start = np.datetime64("2018-01-01 00:00")
    model.run_stop = np.datetime64("2018-01-02 00:00")

    # 50m2, 5.0 m3/s, 0.1m/s
    source = sun_driver.FlowBC(name='inflow',
                               geom=np.array([[0, 0], [0, 10]]),
                               Q=10.0)
    outlet = sun_driver.StageBC(name='outflow',
                                geom=np.array([[100, 0], [100, 10]]),
                                z=-1)
    model.add_bcs([source, outlet])

    model.set_run_dir('rundata_2d_average', mode='pristine')
    model.projection = 'EPSG:26910'

    model.config['dt'] = 2.5
    model.config['ntout'] = 100
    model.config['ntaverage'] = 100
    model.config['calcaverage'] = 1
    model.config['averageNetcdfFile'] = "average.nc"
    model.config['thetaramptime'] = 100

    model.config['Cmax'] = 2
    model.config['Nkmax'] = 1
    model.config['stairstep'] = 0
    model.config['mergeArrays'] = 0
    return model
Ejemplo n.º 3
0
                   nx=int(L/dx_lon),ny=int(W/dy_lat))

g.add_cell_field('depth',bathy(g.cells_center()))


model.set_grid(g)
model.config['maxFaces']=4

model.z_offset=0

from shapely import geometry
feats=np.zeros( 2, [ ('name','O'),
                     ('geom','O') ] )
feats[0]['name']='left'
# HALF STEP:
feats[0]['geom']=geometry.LineString( [ [0,W/2], [0,W] ] )
feats[1]['name']='right'
feats[1]['geom']=geometry.LineString( [ [L,0], [L,W] ] )

model.add_gazetteer(feats)

Q_left=drv.FlowBC(name='left',Q=200.0)
h_right=drv.StageBC(name='right',z=0.0)

model.add_bcs([Q_left,h_right])

model.write()
model.partition()
#model.run_simulation()

Ejemplo n.º 4
0
n1 = g.select_nodes_nearest([300, 0])
n2 = g.select_nodes_nearest([300, 500])

model = sun_driver.SuntansModel()
model.load_template('sun-template.dat')
model.set_grid(g)
model.run_start = np.datetime64("2018-01-01 00:00")
model.run_stop = np.datetime64("2018-01-01 10:00")

dt = np.timedelta64(600, 's')
times = np.arange(model.run_start - dt, model.run_stop + 2 * dt, dt)
secs = (times - times[0]) / np.timedelta64(1, 's')
eta_values = -6 + 0.75 * np.cos(secs * np.pi / 7200)
eta_da = xr.DataArray(eta_values, coords=[('time', times)])
eta_bc = sun_driver.StageBC(name="eta_bc",
                            geom=np.array([[0, 0], [0, 500]]),
                            z=eta_da)

model.add_bcs(eta_bc)
model.add_bcs([
    sun_driver.ScalarBC(parent=eta_bc, scalar="S", value=1),
    sun_driver.ScalarBC(parent=eta_bc, scalar="T", value=1)
])

# point source that is typically dry
hill_source = sun_driver.SourceSinkBC(name='inflow',
                                      geom=np.array([150, 150]),
                                      z=-10,
                                      Q=1.0)

# on a saddle
Ejemplo n.º 5
0
model.add_gazetteer("gis/forcing-v00.shp")

Q_upstream = drv.FlowBC(name='SJ_upstream', Q=250.0)
Qdown = -100  # target outflow
# ramp up to the full outflow over 1h
h = np.timedelta64(1, 'h')
Qdown = xr.DataArray(
    data=[0, 0, Qdown, Qdown, Qdown],
    name='Q',
    dims=['time'],
    coords=dict(time=[
        model.run_start - 24 * h, model.run_start, model.run_start +
        ramp_hours * h, model.run_stop, model.run_stop + 24 * h
    ]))
Q_downstream = drv.FlowBC(name='SJ_downstream', Q=Qdown)
h_old_river = drv.StageBC(name='Old_River', z=2.2 - 0.65)

model.add_bcs([Q_upstream, Q_downstream, h_old_river])

model.write()

#--
if 0:
    # Add in variable roughness
    ec = model.grid.edges_center()
    z0_map = field.GdalGrid("../../bathy/composite-roughness.tif")

    z0 = z0_map(ec)
    z0[np.isnan(z0)] = float(model.config['z0B'])
    model.ic_ds['z0B'] = ('time', 'Ne'), z0[None, :]
    model.write_ic_ds()
Ejemplo n.º 6
0
def test_point_source_3d():
    """
    A square 3D grid with wetting and drying.
    the bathymetry is a wavy cos(x)*cos(y) function.
    two point sources and an oscillating freesurface.
    one point source at a saddle point, and the other
    on top of a bump which goes dry.

    This currently does pretty well, but it could be
    better -- see the test thresholds near the end which
    have been relaxed somewhat.
    """
    g=unstructured_grid.UnstructuredGrid(max_sides=4)
    g.add_rectilinear([0,0],[500,500],50,50)

    # wavy bed
    half_wave=150
    cc=g.cells_center()
    cell_depth=-6 + np.cos(cc[:,0]*np.pi/half_wave) * np.cos(cc[:,1]*np.pi/half_wave)
    g.add_cell_field('depth',cell_depth)

    model=sun_driver.SuntansModel()
    model.load_template('point_source_test.dat')
    model.set_grid(g)
    model.run_start=np.datetime64("2018-01-01 00:00")
    model.run_stop =np.datetime64("2018-01-01 10:00")

    dt=np.timedelta64(600,'s')
    times=np.arange(model.run_start-dt,model.run_stop+2*dt,dt)
    secs=(times-times[0])/np.timedelta64(1,'s')
    eta_values=-6 + 0.75*np.cos(secs*np.pi/7200)
    eta_da=xr.DataArray(eta_values,coords=[ ('time',times) ])
    eta_bc=sun_driver.StageBC(name="eta_bc",geom=np.array([ [0,0],
                                                            [0,500]]),
                              z=eta_da)

    model.add_bcs(eta_bc)
    model.add_bcs( [sun_driver.ScalarBC(parent=eta_bc,scalar="S",value=1),
                    sun_driver.ScalarBC(parent=eta_bc,scalar="T",value=1)] )

    # point source that is typically dry
    hill_source=sun_driver.SourceSinkBC(name='inflow',geom=np.array([150,150]),
                                        z=-10,Q=1.0)

    # on a saddle
    saddle_source=sun_driver.SourceSinkBC(name='inflow',geom=np.array([220,225]),
                                          z=-10,Q=1.0)

    model.add_bcs(hill_source)
    model.add_bcs(saddle_source)
    model.add_bcs( [sun_driver.ScalarBC(parent=hill_source,scalar="S",value=1),
                    sun_driver.ScalarBC(parent=hill_source,scalar="T",value=1)] )
    model.add_bcs( [sun_driver.ScalarBC(parent=saddle_source,scalar="S",value=1),
                    sun_driver.ScalarBC(parent=saddle_source,scalar="T",value=1)] )

    model.set_run_dir('rundata_point_3d', mode='pristine')
    model.projection='EPSG:26910'
    model.num_procs=4
    model.config['dt']=2.5
    model.config['ntout']=5
    model.config['Cmax']=30
    model.config['Nkmax']=10
    model.config['stairstep']=0
    model.config['mergeArrays']=0

    model.write()

    model.ic_ds.eta.values[:]=eta_da.values[1]
    model.ic_ds.salt.values[:]=1.0
    model.ic_ds.temp.values[:]=1.0
    model.write_ic_ds()

    model.partition()
    model.sun_verbose_flag='-v'
    model.run_simulation()

    for map_fn in model.map_outputs():
        ds=xr.open_dataset(map_fn)

        dzz=ds.dzz.values
        # This is not as strict as it should be.
        # should be 0.001 or less.
        dzz_thresh=0.05
        salt=ds.salt.values
        valid=np.isfinite(dzz) & (dzz>=dzz_thresh)
        salt_errors=salt[valid] - 1.0

        # This is not as strict as it should be.
        # we should be able to get this down to 1e-4 or
        # better.
        assert np.max( np.abs(salt_errors) )<0.01
        ds.close()
Ejemplo n.º 7
0
model.add_gazetteer("grid-lsb/linear_features.shp")

##

ocean_salt_bc = drv.ScalarBC(name='ocean', scalar='salinity', value=25)
ocean_temp_bc = drv.ScalarBC(name='ocean', scalar='temperature', value=10)
msl_navd88 = 0.94  # m

ocean_bc = drv.NOAAStageBC(
    name='ocean',
    station=9414575,  # Coyote - will come in as MSL
    # station=9414750, # Alameda.
    cache_dir=cache_dir,
    filters=[dfm.Lowpass(cutoff_hours=1.5)])
ocean_offset_bc = drv.StageBC(name='ocean',
                              mode='add',
                              z=z_offset_manual + msl_navd88)

model.add_bcs([ocean_bc, ocean_salt_bc, ocean_temp_bc, ocean_offset_bc])

import sfb_common
# sfb_common.add_usgs_stream_bcs(model,cache_dir)  # disable if no internet
# sfb_common.add_potw_bcs(model,cache_dir)

if __name__ == '__main__':
    if args.write_grid:
        model.grid.write_ugrid(args.write_grid, overwrite=True)
    else:
        model.write()
        try:
            shutil.copy(__file__, model.run_dir)
def base_model(run_dir,run_start,run_stop,
               restart_from=None,
               grid_option=None,
               steady=False):
    if restart_from is None:
        model=SuntansModel()
        model.load_template(os.path.join(here,"sun-template.dat"))
        model.num_procs=num_procs
    else:
        old_model=SuntansModel.load(restart_from)
        model=old_model.create_restart()

    model.manual_z_offset=-4
    model.z_offset=0.0 # moving away from the semi-automated datum shift to manual shift
    
    model.projection="EPSG:26910"

    model.set_run_dir(run_dir,mode='pristine')

    if model.restart:
        model.run_start=model.restart_model.restartable_time()
    else:
        model.run_start=run_start
    
    model.run_stop=run_stop

    model.config['grid_option']=grid_option or 'snubby'

    if restart_from is None:
        ramp_hours=1 # how quickly to increase the outflow
    else:
        ramp_hours=0

    if not model.restart:
        # dt=0.25 # for lower friction run on refined shore grid
        # with new grid that's deformed around the barrier can probably
        # get away with 0.5
        # dt=0.5 # for lower friction run on refined shore grid
        dt=0.25 # bit of safety for high res grid.
        # dt=0.1 # for shaved cell grid. still not stable.
        model.config['dt']=dt
        model.config['metmodel']=0 # 0: no wind, 4: wind only

        model.config['nonlinear']=1

        if 0:
            model.config['Nkmax']=1
            model.config['stairstep']=0 
        if 1:
            model.config['Nkmax']=50
            model.config['stairstep']=1 # 3D, stairstep
        
        model.config['thetaM']=-1 # with 1, seems to be unstable
        model.config['z0B']=5e-4 # maybe with ADCP bathy need more friction
        # slow, doesn't make a huge difference, but does make w nicer.
        model.config['nonhydrostatic']=0
        model.config['nu_H']=0.0
        model.config['nu']=1e-5
        model.config['turbmodel']=10 # 1: my25, 10: parabolic
        model.config['CdW']=0.0 # 
        model.config['wetdry']=1
        model.config['maxFaces']=4
        model.config['mergeArrays']=1 # hopefully easier to use than split up.

        if model.config['grid_option']=='snubby':
            # 2019-07-11: refine near-shore swaths of grid, snubby-01 => snubby-04
            # 2019-07-12: further refinements 04 => 06
            #grid_src="../grid/snubby_junction/snubby-06.nc"
            #grid_src="../grid/snubby_junction/snubby-07-edit45.nc"
            #grid_src="../grid/snubby_junction/snubby-08-edit06.nc" 
            #grid_src="../grid/snubby_junction/snubby-08-edit24.nc"
            #grid_src="../grid/snubby_junction/snubby-08-edit50.nc" # good
            grid_src="../grid/snubby_junction/snubby-08-edit60.nc" # higher res in hole
            #grid_src="../grid/snubby_junction/snubby-08-refine-edit03.nc" # double res of edit60
        elif model.config['grid_option']=='large':
            grid_src="../grid/merge_v16/merge_v16_edit09.nc"
        else:
            raise Exception("Unknown grid option %s"%grid_option)

        # bathy_suffix=''
        # post_suffix='med0' # on-grid bathy postprocessesing:

        #bathy_suffix='smooth' # pre-smoothed just in sand wave areas
        bathy_suffix='smoothadcp' # pre-smoothed just in sand wave areas, and revisit ADCP data.
        #bathy_suffix='smoothadcp2' # same, but extend ADCP data upstream.
        post_suffix=''
        
        # bathy_suffix='adcp'
        # post_suffix=''

        grid_bathy=os.path.basename(grid_src).replace('.nc',f"-with_bathy{bathy_suffix}{post_suffix}.nc")

        if utils.is_stale(grid_bathy,[grid_src]):
            g_src=unstructured_grid.UnstructuredGrid.from_ugrid(grid_src)
            g_src.cells_center(refresh=True)
            bare_edges=g_src.orient_edges(on_bare_edge='return')
            if len(bare_edges):
                ec=g_src.edges_center()
                for j in bare_edges[:50]:
                    print("Bare edge: j=%d  xy=%g %g"%(j, ec[j,0], ec[j,1]))
                raise Exception('Bare edges in grid')
            add_bathy.add_bathy(g_src,suffix=bathy_suffix)
            add_bathy.postprocess(g_src,suffix=post_suffix)
            
            g_src.write_ugrid(grid_bathy,overwrite=True)
            
        g=unstructured_grid.UnstructuredGrid.from_ugrid(grid_bathy)
        g.cells['z_bed'] += model.manual_z_offset

        g.delete_edge_field('edge_z_bed')
        #g.edges['edge_z_bed'] += model.manual_z_offset

        model.set_grid(g)
        model.grid.modify_max_sides(4)
    dt=float(model.config['dt'])

    # with 0.01, was getting many CmaxW problems.
    model.config['dzmin_surface']=0.05 # may have to bump this up..
    model.config['ntout']=int(1800./dt) 
    model.config['ntaverage']=int(1800./dt)
    model.config['ntoutStore']=int(86400./dt)
    # isn't this just duplicating the setting from above?
    model.z_offset=0.0 # moving away from the semi-automated datum shift to manual shift

    if model.config['grid_option']=='snubby':
        model.add_gazetteer(os.path.join(here,"../grid/snubby_junction/forcing-snubby-01.shp"))
    elif model.config['grid_option']=='large':
        model.add_gazetteer(os.path.join(here,"../grid/merge_v16/forcing-merge_16-01.shp"))
        
    def fill(da):
        return utils.fill_tidal_data(da,fill_time=False)

    if steady:
        # Would like to ramp these up at the very beginning.
        # Mossdale, tested at 220.0 m3/s
        Q_upstream=drv.FlowBC(name='SJ_upstream',flow=220.0,dredge_depth=None)
        Q_downstream=drv.FlowBC(name='SJ_downstream',flow=-100,dredge_depth=None)
        # had been 1.75.  but that's showing about 0.75m too much water.
        # could be too much friction, or too high BC.
        h_old_river=drv.StageBC(name='Old_River',water_level=1.75 + model.manual_z_offset)
    else:
        # 15 minute data. The flows in particular have enough overtide energy
        # that the lowpass interval shouldn't be too large. Spot checks of plots
        # show 1.0h is pretty good
        lp_hours=1.0
        
        data_upstream=common.msd_flow(model.run_start,model.run_stop)
        Q_upstream=drv.FlowBC(name="SJ_upstream",flow=data_upstream.flow_m3s,dredge_depth=None,
                              filters=[hm.Lowpass(cutoff_hours=1.0)])

        data_downstream=common.sjd_flow(model.run_start,model.run_stop)
        # flip sign to get outflow.
        Q_downstream=drv.FlowBC(name="SJ_downstream",flow=-data_downstream.flow_m3s,dredge_depth=None,
                                filters=[hm.Lowpass(cutoff_hours=1.0)])

        or_stage=common.oh1_stage(model.run_start,model.run_stop)
        h_old_river=drv.StageBC(name='Old_River',water_level=or_stage.stage_m,
                                filters=[hm.Transform(fn=lambda x: x+model.manual_z_offset),
                                         hm.Lowpass(cutoff_hours=1.0)])

    model.add_bcs([Q_upstream,Q_downstream,h_old_river])
    
    model.write()

    assert np.all(np.isfinite(model.bc_ds.boundary_Q.values))

    if not model.restart:
        # bathy rms ranges from 0.015 to 1.5
        # 0.5 appears a little better than 1.0 or 0.1
        # cfg007 used 0.1, and the shape was notably not as good
        # as steady008.
        # cfg008 will return to 0.5...
        # BUT - now that I have more metrics in place, it looks like cfg007
        # was actually better, in terms of MAE over top 2m, and smaller bias.
        # with that in mind, steady012 will try an even smaller factor, and infact
        # something more in line with Nikuradse.
        # best roughness using constant z0B was 5e-4.
        # so map 0.1 to that...
        if 1:
            print("Adding roughness")
            grid_roughness.add_roughness(model.grid)
            cell_z0B=(1./30)*model.grid.cells['bathy_rms']
            e2c=model.grid.edge_to_cells()
            nc1=e2c[:,0]
            nc2=e2c[:,1]
            nc2[nc2<0]=nc1[nc2<0]
            edge_z0B=0.5*( cell_z0B[nc1] + cell_z0B[nc2] )
            model.ic_ds['z0B']=('time','Ne'), edge_z0B[None,:]
        model.write_ic_ds()

        if int(model.config['metmodel'])>=4:
            # and how about some wind?
            times=np.array( [model.run_start - np.timedelta64(10,'D'),
                             model.run_start,
                             model.run_stop,
                             model.run_stop  + np.timedelta64(10,'D')] )
            nt=len(times)
            met_ds=model.zero_met(times=times)
            pnts=model.grid.cells_center()[:1]
            for comp in ['Uwind','Vwind']:
                met_ds['x_'+comp]=("N"+comp,),pnts[:,0]
                met_ds['y_'+comp]=("N"+comp,),pnts[:,1]
                met_ds['z_'+comp]=("N"+comp,),10*np.ones_like(pnts[:,1])

            met_ds['Uwind']=('nt',"NUwind"), 0.0 * np.ones((nt,len(pnts)))
            met_ds['Vwind']=('nt',"NVwind"),-5.0 * np.ones((nt,len(pnts)))
            model.met_ds=met_ds
            model.write_met_ds()

    model.partition()
    model.sun_verbose_flag='-v'
    return model
Ejemplo n.º 9
0
def base_model():
    """
    A channel, uniform bathy.
    """
    g=unstructured_grid.UnstructuredGrid(max_sides=4)
    g.add_rectilinear([0,0],[1000,100],21,3)
    g.add_cell_field('depth',-6*np.ones(g.Ncells()))

    model=sun_driver.SuntansModel()
    model.load_template('point_source_test.dat')
    model.set_grid(g)
    model.run_start=np.datetime64("2018-01-01 00:00")
    model.run_stop =np.datetime64("2018-01-01 10:00")

    dt=np.timedelta64(600,'s')
    times=np.arange(model.run_start-dt,model.run_stop+2*dt,dt)
    secs=(times-times[0])/np.timedelta64(1,'s')
    eta0=-2
    eta_bc=sun_driver.StageBC(name="eta_bc",
                              geom=np.array([ [0,0],
                                              [0,100]]),
                              z=eta0)

    model.add_bcs(eta_bc)
    model.add_bcs( [sun_driver.ScalarBC(parent=eta_bc,scalar="S",value=1),
                    sun_driver.ScalarBC(parent=eta_bc,scalar="T",value=1)] )

    model.set_run_dir('rundata_sedi_3d', mode='pristine')
    model.projection='EPSG:26910'
    model.num_procs=1 # test single first
    model.config['dt']=30
    model.config['ntout']=5
    model.config['Cmax']=30
    model.config['Nkmax']=10
    model.config['stairstep']=0
    model.config['mergeArrays']=0

    # Sediment:
    model.config['computeSediments']=1   # whether include sediment model
    
    model.config['Nlayer']=0 # Number of bed layers (MAX = 5)
    model.config['Nsize']=3  # Number of sediment fractions (Max = 3)
    model.config['TBMAX']=1  # whether to output tb for each cell
    model.config['SETsediment']=0       # When Nlayer>5 or Nsize>3, SETsediment=1 to use SetSediment 
    model.config['WSconstant']=1       # if 1, ws for sediment = ws0
    model.config['readSediment']=0       # if 1, read sediment concentration data as IC. only work with Nsize==1
    model.config['bedInterval']=150     # the interval steps to update bed change
    model.config['bedComplex']=0       # whether to consider the possibility to flush away a whole layer
    model.config['ParabolKappa']=0       # whether to use parabolic tubulent diffusivity
    model.config['Ds90']=0.000008    # ds90 for calculation of erosion taub
    model.config['Ds1']=0.00000057   # sediment diameter for fraction No.1 (m)
    model.config['Ds2']=0.0002    # sediment diameter for fraction No.2                   
    model.config['Ds3']=0.0002    # sediment diameter for fraction No.3
    model.config['Ws01']= 0.0001     # constant settling velocity for fraction No.1 (m/s)
    model.config['Ws02']= 0.01     # constant settling velocity for fraction No.2
    model.config['Ws03']=-0.01     # constant settling velocity for fraction No.3
    model.config['Gsedi1']=2.65      # relative density for fraction No.1
    model.config['Gsedi2']=2.65      # relative density for fraction No.2
    model.config['Gsedi3']=2.65      # relative density for fraction No.3
    model.config['Prt1']=1       # Prandtl Number for fraction No.1
    model.config['Prt2']=1       # Prandtl Number for fraction No.2
    model.config['Prt3']=1       # Prandtl Number for fraction No.3
    model.config['Consolid1']=0.00    # Consolidation rate (g/m^2/s) for layer No.1
    model.config['E01']=0.1      # Basic Erosion Rate Constant (g/m^2/s) for layer No.1
    model.config['Taue1']=0.0       # Erosion Critical Shear Stress (N/m^2) for layer No.1
    # Taud1 isn't actually used in current code.  Deposition always occurs at the rate
    # of w_s.
    model.config['Taud1']=0.0       # Deposition Critical Shear Stress (N/m^2) for layer No.1
    model.config['Drydensity1']=530000    # Dry density (g/m^3) for layer No.1
    model.config['Thickness1']=0.0      # Thickness (m) for layer No.1
    model.config['softhard1']=1         # 0 soft or hard for layer No.1 to decide how to calculate erosion
    model.config['Bedmudratio1']=0.8       # Bed mud ratio for layer No.1
    model.config['Chind']=1000000   # Concentration (in volumetric fraction) criterion for hindered settling velocity
    model.config['Cfloc']=500000    # Concentration (in volumetric fraction) criterion for flocculated settling velcoity
    model.config['k']=0.0002    # Constant coefficient for settling velocity as a function of conc.

    model.config['Sediment1File']='sedi1.dat'
    model.config['Sediment2File']='sedi2.dat'
    model.config['Sediment3File']='sedi3.dat'
    model.config['LayerFile']='sedilayer.dat'
    model.config['tbFile']='Seditb.dat'
    model.config['tbmaxFile']='Seditbmax.dat'
    return model
Ejemplo n.º 10
0
        xy for xy in xys
        if model.grid.select_cells_nearest(xy, inside=True) is not None
    ]
    np.savetxt(os.path.join(model.run_dir, model.config['DataLocations']),
               np.array(valid_xys))

##

# spatially varying
hycom_ll_box = [-124.9, -121.7, 35.9, 39.0]
ocean_bcs = []

if ocean_method == 'eta-otps':
    ocean_bc = drv.MultiBC(drv.OTPSStageBC, name='Ocean', otps_model='wc')
    ocean_offset_bc = drv.StageBC(name='Ocean',
                                  mode='add',
                                  water_level=z_offset_manual)
    ocean_bcs += [ocean_bc, ocean_offset_bc]
elif ocean_method == 'flux-otps':
    ocean_bc = drv.MultiBC(drv.OTPSFlowBC, name='Ocean', otps_model='wc')
    ocean_bcs.append(ocean_bc)
elif ocean_method == 'velocity-otps':
    ocean_bc = drv.MultiBC(drv.OTPSVelocityBC, name='Ocean', otps_model='wc')
    ocean_bcs.append(ocean_bc)
elif ocean_method.startswith('velocity-hycom'):
    # explicity give bounds to make sure we always download the same
    # subset.
    # z_offset here is the elevation of MSL in the model vertical datum.
    # NAVD88 is offset by z_offset_manual, but MSL is a bit higher than
    # that.
    ocean_bc = drv.HycomMultiVelocityBC(ll_box=hycom_ll_box,