def check_lcp_array(self, t, n, reference):
self.assertEqual(
suffix_array.lcp_from_suffix_array(
suffix_array.prefix_doubling(t, n), t, n), reference,
'LCP array from suffix array')
self.assertEqual(
suffix_array.lcp_from_suffix_tree(suffix_tree.mccreight(t, n)[0]),
reference, 'LCP array from suffix tree')
self.assertEqual(
suffix_array.lcp_kasai(suffix_array.prefix_doubling(t, n), t, n),
reference, 'Algorithm: kasai')
def test_random_lcp_array(self):
T, n, A = 100, 500, ['a', 'b']
for _ in range(T):
t = rand.random_word(n, A)
reference = suffix_array.lcp_from_suffix_array(
suffix_array.prefix_doubling(t, n), t, n)
self.check_lcp_array(t, n, reference)
def test_all_lcp_array(self):
N, A = 12, ['a', 'b']
for n in range(2, N + 1):
for t in itertools.product(A, repeat = n):
t = '#' + ''.join(t)
reference = suffix_array.lcp_from_suffix_array(
suffix_array.prefix_doubling(t, n), t, n)
self.check_lcp_array(t, n, reference)
'Boyer-Moore-Apostolico-Giancarlo',
backward.boyer_moore_apostolico_giancarlo
],
['Horspool', backward.horspool],
['Karp-Rabin', other.karp_rabin],
['fast-on-average', other.fast_on_average],
['two-way constant space', other.two_way],
[
'suffix tree',
lambda t, w, n, m: suffix_tree.contains(
suffix_tree.mccreight(t, n)[0], t, w, n, m),
],
[
'suffix array',
lambda t, w, n, m: suffix_array.contains(
suffix_array.prefix_doubling(t, n), t, w, n, m),
],
['lcp-lr array', lcp_lr_contains],
]
class TestExactStringMatching(unittest.TestCase):
run_large = unittest.skipUnless(os.environ.get('LARGE', False),
'Skip test in small runs')
def check_first_exact_match(self, t, w, n, m, reference, algorithm):
self.assertEqual(next(algorithm(t, w, n, m)), reference)
def check_all_exact_matches(self, t, w, n, m, reference, algorithm):
self.assertEqual(list(algorithm(t, w, n, m)), reference)
import os
import unittest
import parameterized
from generator import rand
from string_indexing import farach, lcp, suffix_array, suffix_tree
LCP_ARRAY_ALGORITHMS = [
[
'Farach',
farach.lcp_array,
],
[
'Kasai',
lambda t, n: lcp.kasai(suffix_array.prefix_doubling(t, n), t, n),
],
[
'from suffix tree',
lambda t, n: lcp.from_suffix_tree(suffix_tree.mccreight(t, n)[0]),
],
[
'from suffix array',
lambda t, n: lcp.from_suffix_array(suffix_array.prefix_doubling(t, n),
t, n),
]
]
class TestLcpArrays(unittest.TestCase):
run_large = unittest.skipUnless(os.environ.get('LARGE', False),