if os.path.exists(fsfile):
hdu.close()
plt_ax = False
if tidx == 0:
ax = axs[0]
timetext = ax.text(0.95,
0.02,
eomap.date.strftime('%H:%M:%S'),
ha='right',
va='bottom',
transform=ax.transAxes,
color='w',
fontweight='bold')
else:
timetext.set_text(eomap.date.strftime('%H:%M:%S'))
tim_axvspan_xy = tim_axvspan.get_xy()
tim_axvspan_xy[np.array([0, 1, 4]),
0] = Time(imres['BeginTime'][tidx]).plot_date
tim_axvspan_xy[np.array([2, 3]),
0] = Time(imres['EndTime'][tidx]).plot_date
tim_axvspan.set_xy(tim_axvspan_xy)
# tim_axvspan.set_xy(tim_axvspan_xy)
figname = fsfile[:-9] + '.png'
fig.savefig(figname, dpi=100)
plt.ion()
DButil.img2html_movie('{}/EO'.format(outdir))
def plt_qlook_image(imres, figdir=None, specdata=None, verbose=True, stokes='I,V', fov=None):
from matplotlib import pyplot as plt
from sunpy import map as smap
from sunpy import sun
import astropy.units as u
if not figdir:
figdir = './'
observatory = 'EOVSA'
polmap = {'RR': 0, 'LL': 1, 'I': 0, 'V': 1}
pols = stokes.split(',')
npols = len(pols)
# SRL = set(['RR', 'LL'])
# SXY = set(['XX', 'YY', 'XY', 'YX'])
Spw = sorted(list(set(imres['Spw'])))
nspw = len(Spw)
# Freq = set(imres['Freq']) ## list is an unhashable type
Freq = sorted(uniq(imres['Freq']))
plttimes = list(set(imres['BeginTime']))
ntime = len(plttimes)
# sort the imres according to time
images = np.array(imres['ImageName'])
btimes = Time(imres['BeginTime'])
etimes = Time(imres['EndTime'])
spws = np.array(imres['Spw'])
suc = np.array(imres['Succeeded'])
inds = btimes.argsort()
images_sort = images[inds].reshape(ntime, nspw)
btimes_sort = btimes[inds].reshape(ntime, nspw)
suc_sort = suc[inds].reshape(ntime, nspw)
spws_sort = spws[inds].reshape(ntime, nspw)
if verbose:
print '{0:d} figures to plot'.format(ntime)
plt.ioff()
import matplotlib.gridspec as gridspec
spec = specdata['spec']
(npol, nbl, nfreq, ntim) = spec.shape
tidx = range(ntim)
fidx = range(nfreq)
tim = specdata['tim']
freq = specdata['freq']
freqghz = freq / 1e9
pol = ''.join(pols)
spec_tim = Time(specdata['tim'] / 3600. / 24., format='mjd')
timstrr = spec_tim.plot_date
if npols == 1:
if pol == 'RR':
spec_plt = spec[0, 0, :, :]
elif pol == 'LL':
spec_plt = spec[1, 0, :, :]
elif pol == 'I':
spec_plt = (spec[0, 0, :, :] + spec[1, 0, :, :]) / 2.
elif pol == 'V':
spec_plt = (spec[0, 0, :, :] - spec[1, 0, :, :]) / 2.
spec_plt = [spec_plt]
print 'plot the dynamic spectrum in pol ' + pol # ax1 = fig.add_subplot(211)
hnspw = nspw / 2
ncols = hnspw
nrows = 2 + 2 # 1 image: 1x1, 1 dspec:2x4
fig = plt.figure(figsize=(8, 8))
gs = gridspec.GridSpec(nrows, ncols)
axs = [plt.subplot(gs[0, 0])]
for ll in range(1, nspw):
axs.append(plt.subplot(gs[ll / hnspw, ll % hnspw], sharex=axs[0], sharey=axs[0]))
for ll in range(nspw):
axs.append(plt.subplot(gs[ll / hnspw + 2, ll % hnspw], sharex=axs[0], sharey=axs[0]))
axs_dspec = [plt.subplot(gs[2:, :])]
cmaps = ['jet']
elif npols == 2:
R_plot = np.absolute(spec[0, 0, :, :])
L_plot = np.absolute(spec[1, 0, :, :])
if pol == 'RRLL':
spec_plt = [R_plot, L_plot]
polstr = ['RR', 'LL']
cmaps = ['jet'] * 2
if pol == 'IV':
I_plot = (R_plot + L_plot) / 2.
V_plot = (R_plot - L_plot) / 2.
spec_plt = [I_plot, V_plot]
polstr = ['I', 'V']
cmaps = ['jet', 'RdBu']
print 'plot the dynamic spectrum in pol ' + pol
hnspw = nspw / 2
ncols = hnspw + 2 # 1 image: 1x1, 1 dspec:2x2
nrows = 2 + 2
fig = plt.figure(figsize=(12, 8))
gs = gridspec.GridSpec(nrows, ncols)
axs = [plt.subplot(gs[0, 0])]
for ll in range(1, nspw):
axs.append(plt.subplot(gs[ll / hnspw, ll % hnspw], sharex=axs[0], sharey=axs[0]))
for ll in range(nspw):
axs.append(plt.subplot(gs[ll / hnspw + 2, ll % hnspw], sharex=axs[0], sharey=axs[0]))
axs_dspec = [plt.subplot(gs[:2, hnspw:])]
axs_dspec.append(plt.subplot(gs[2:, hnspw:], sharex=axs_dspec[0], sharey=axs_dspec[0]))
fig.subplots_adjust(left=0, bottom=0, right=1, top=1, wspace=0, hspace=0)
timetext = fig.text(0.01, 0.98, '', color='w', fontweight='bold', fontsize=12, ha='left', va='top')
for i in range(ntime):
plt.ioff()
# plt.clf()
for ax in axs:
ax.cla()
plttime = btimes_sort[i, 0]
# tofd = plttime.mjd - np.fix(plttime.mjd)
suci = suc_sort[i]
# if tofd < 16. / 24. or sum(
# suci) < nspw - 2: # if time of the day is before 16 UT (and 24 UT), skip plotting (because the old antennas are not tracking)
# continue
# fig=plt.figure(figsize=(9,6))
# fig.suptitle('EOVSA @ '+plttime.iso[:19])
timetext.set_text(plttime.iso[:19])
if verbose:
print 'Plotting image at: ', plttime.iso
if i == 0:
dspecvspans = []
for pol in range(npols):
ax = axs_dspec[pol]
ax.pcolormesh(timstrr, freqghz, spec_plt[pol], cmap=cmaps[pol])
ax.xaxis_date()
ax.xaxis.set_major_formatter(DateFormatter("%H:%M:%S"))
# plt.xticks(rotation=45)
ax.set_xlim(timstrr[tidx[0]], timstrr[tidx[-1]])
ax.set_ylim(freqghz[fidx[0]], freqghz[fidx[-1]])
ax.set_xlabel('Time [UT]')
ax.set_ylabel('Frequency [GHz]')
for idx, freq in enumerate(Freq):
ax.axhspan(freq[0], freq[1], linestyle='dotted', edgecolor='w', alpha=0.7, facecolor='none')
xtext, ytext = ax.transAxes.inverted().transform(ax.transData.transform([timstrr[tidx[0]], np.mean(freq)]))
ax.text(xtext + 0.01, ytext, 'spw ' + Spw[idx], color='w', transform=ax.transAxes, fontweight='bold', ha='left', va='center',
fontsize=8, alpha=0.5)
ax.text(0.01, 0.98, 'Stokes ' + pols[pol], color='w', transform=ax.transAxes, fontweight='bold', ha='left', va='top')
dspecvspans.append(ax.axvspan(btimes[i].plot_date, etimes[i].plot_date, color='w', alpha=0.4))
ax_pos = ax.get_position().extents
x0, y0, x1, y1 = ax_pos
h, v = x1 - x0, y1 - y0
x0_new = x0 + 0.15 * h
y0_new = y0 + 0.15 * v
x1_new = x1 - 0.05 * h
y1_new = y1 - 0.05 * v
ax.set_position(mpl.transforms.Bbox([[x0_new, y0_new], [x1_new, y1_new]]))
else:
for pol in range(npols):
xy = dspecvspans[pol].get_xy()
xy[:, 0][np.array([0, 1, 4])] = btimes[i].plot_date
xy[:, 0][np.array([2, 3])] = etimes[i].plot_date
dspecvspans[pol].set_xy(xy)
for n in range(nspw):
image = images_sort[i, n]
# fig.add_subplot(nspw/3, 3, n+1)
# fig.add_subplot(2, nspw / 2, n + 1)
for pol in range(npols):
if suci[n]:
try:
eomap = smap.Map(image)
except:
continue
sz = eomap.data.shape
if len(sz) == 4:
eomap.data = eomap.data[min(polmap[pols[pol]], eomap.meta['naxis4'] - 1), 0, :, :].reshape((sz[2], sz[3]))
# resample the image for plotting
if fov is not None:
fov = [np.array(ll) for ll in fov]
pad = max(np.diff(fov[0])[0], np.diff(fov[1])[0])
eomap = eomap.submap((fov[0] + np.array([-1.0, 1.0]) * pad) * u.arcsec, (fov[1] + np.array([-1.0, 1.0]) * pad) * u.arcsec)
else:
dim = u.Quantity([256, 256], u.pixel)
eomap = eomap.resample(dim)
eomap.plot_settings['cmap'] = plt.get_cmap(cmaps[pol])
# import pdb
# pdb.set_trace()
eomap.plot(axes=axs[n + nspw * pol])
eomap.draw_limb()
eomap.draw_grid()
ax = plt.gca()
ax.set_autoscale_on(False)
if fov:
# pass
ax.set_xlim(fov[0])
ax.set_ylim(fov[1])
else:
ax.set_xlim([-1080, 1080])
ax.set_ylim([-1080, 1080])
spwran = spws_sort[i, n]
# freqran = [int(s) * 0.5 + 2.9 for s in spwran.split('~')]
# if len(freqran) == 1:
# ax.text(0.98, 0.01, '{0:.1f} GHz'.format(freqran[0]), color='w',
# transform=ax.transAxes, fontweight='bold', ha='right')
# else:
# ax.text(0.98, 0.01, '{0:.1f} - {1:.1f} GHz'.format(freqran[0], freqran[1]), color='w',
# transform=ax.transAxes, fontweight='bold', ha='right')
ax.text(0.98, 0.01, 'Stokes {1} @ {0:.3f} GHz'.format(eomap.meta['crval3'] / 1e9, pols[pol]), color='w', transform=ax.transAxes,
fontweight='bold', ha='right')
ax.set_title(' ')
# ax.set_title('spw '+spws_sort[i,n])
# ax.text(0.01,0.02, plttime.isot,transform=ax.transAxes,color='white')
ax.xaxis.set_visible(False)
ax.yaxis.set_visible(False)
else:
# make an empty map
data = np.zeros((512, 512))
header = {"DATE-OBS": plttime.isot, "EXPTIME": 0., "CDELT1": 5., "NAXIS1": 512, "CRVAL1": 0., "CRPIX1": 257, "CUNIT1": "arcsec",
"CTYPE1": "HPLN-TAN", "CDELT2": 5., "NAXIS2": 512, "CRVAL2": 0., "CRPIX2": 257, "CUNIT2": "arcsec",
"CTYPE2": "HPLT-TAN", "HGLT_OBS": sun.heliographic_solar_center(plttime)[1].value, "HGLN_OBS": 0.,
"RSUN_OBS": sun.solar_semidiameter_angular_size(plttime).value, "RSUN_REF": sun.constants.radius.value,
"DSUN_OBS": sun.sunearth_distance(plttime).to(u.meter).value, }
eomap = smap.Map(data, header)
# resample the image for plotting
if fov:
fov = [np.array(ll) for ll in fov]
pad = max(np.diff(fov[0])[0], np.diff(fov[1])[0])
try:
eomap = eomap.submap((fov[0] + np.array([-1.0, 1.0]) * pad) * u.arcsec, (fov[1] + np.array([-1.0, 1.0]) * pad) * u.arcsec)
except:
x0, x1 = fov[0] + np.array([-1.0, 1.0]) * pad
y0, y1 = fov[1] + np.array([-1.0, 1.0]) * pad
bl = SkyCoord(x0 * u.arcsec, y0 * u.arcsec, frame=eomap.coordinate_frame)
tr = SkyCoord(x1 * u.arcsec, y1 * u.arcsec, frame=eomap.coordinate_frame)
eomap = eomap.submap(bl, tr)
else:
dim = u.Quantity([256, 256], u.pixel)
eomap = eomap.resample(dim)
eomap.plot_settings['cmap'] = plt.get_cmap(cmaps[pol])
eomap.plot(axes=axs[n + nspw * pol])
eomap.draw_limb()
eomap.draw_grid()
ax = plt.gca()
ax.set_autoscale_on(False)
if fov:
# pass
ax.set_xlim(fov[0])
ax.set_ylim(fov[1])
else:
ax.set_xlim([-1080, 1080])
ax.set_ylim([-1080, 1080])
# ax.set_title('spw '+spwran+'( )'))
spwran = spws_sort[i, n]
freqran = [int(s) * 0.5 + 2.9 for s in spwran.split('~')]
spwran = spws_sort[i, n]
# ax.set_title('{0:.1f} - {1:.1f} GHz'.format(freqran[0],freqran[1]))
# ax.text(0.98, 0.01, '{0:.1f} - {1:.1f} GHz'.format(freqran[0], freqran[1]), color='w',
# transform=ax.transAxes, fontweight='bold', ha='right')
ax.text(0.98, 0.01, 'Stokes {1} @ {0:.3f} GHz'.format(0., pols[pol]), color='w', transform=ax.transAxes, fontweight='bold',
ha='right')
ax.set_title(' ')
# ax.text(0.01,0.02, plttime.isot,transform=ax.transAxes,color='white')
ax.xaxis.set_visible(False)
ax.yaxis.set_visible(False)
figname = observatory + '_qlimg_' + plttime.isot.replace(':', '').replace('-', '')[:19] + '.png'
fig_tdt = plttime.to_datetime()
# fig_subdir = fig_tdt.strftime("%Y/%m/%d/")
figdir_ = figdir # + fig_subdir
if not os.path.exists(figdir_):
os.makedirs(figdir_)
if verbose:
print 'Saving plot to: ' + os.path.join(figdir_, figname)
plt.savefig(os.path.join(figdir_, figname))
plt.close(fig)
DButil.img2html_movie(figdir_)
