# Overlay another hopeful beauty (functional overlay)
brain.add_overlay(surf_data, name="overlap", sign=sw0.sign)
# Update colorbar
tmp = brain.overlays["overlap"]
lut = tmp.pos_bar.lut.table.to_array()
lut[:, 0:3] = [230, 171, 2]
tmp.pos_bar.lut.table = lut
# Refresh
brain.show_view("lat")
brain.hide_colorbar()
# Save the beauts
brain.save_imageset("%s_%s" % (sw0.outprefix, hemi),
sw0.views,
'jpg',
colorbar=None)
# End a great journey, till another life
brain.close()
sw0.cropify()
sw0.montage("box")
sw0.montage("stick")
####
## Setup
#
## 3dcalc -a /home2/data/Projects/CWAS/nki/cwas/short/compcor_kvoxs_smoothed_to_kvoxs_smoothed/iq_age+sex+meanFD.mdmr/cluster_correct_v05_c05/clust_logp_FSIQ.nii.gz -b /home2/data/Projects/CWAS/nki/cwas/medium/compcor_kvoxs_smoothed_to_kvoxs_smoothed/iq_age+sex+meanFD.mdmr/cluster_correct_v05_c05/clust_logp_FSIQ.nii.gz -expr 'step(a)+(2*step(b))' -prefix /home2/data/Projects/CWAS/figures/fig_03/C_overlap.nii.gz
#
#basedir = "/home2/data/Projects/CWAS"
if (sum(abs(surf_data)) > 0):
# Overlay another hopeful beauty (functional overlay)
brain.add_overlay(surf_data, name="overlap", sign=sw0.sign)
# Update colorbar
tmp = brain.overlays["overlap"]
lut = tmp.pos_bar.lut.table.to_array()
lut[:,0:3] = [230,171,2]
tmp.pos_bar.lut.table = lut
# Refresh
brain.show_view("lat")
brain.hide_colorbar()
# Save the beauts
brain.save_imageset("%s_%s" % (sw0.outprefix, hemi), sw0.views,
'jpg', colorbar=None)
# End a great journey, till another life
brain.close()
sw0.cropify()
sw0.montage("box")
sw0.montage("stick")
####
## Setup
#
## 3dcalc -a /home2/data/Projects/CWAS/nki/cwas/short/compcor_kvoxs_smoothed_to_kvoxs_smoothed/iq_age+sex+meanFD.mdmr/cluster_correct_v05_c05/clust_logp_FSIQ.nii.gz -b /home2/data/Projects/CWAS/nki/cwas/medium/compcor_kvoxs_smoothed_to_kvoxs_smoothed/iq_age+sex+meanFD.mdmr/cluster_correct_v05_c05/clust_logp_FSIQ.nii.gz -expr 'step(a)+(2*step(b))' -prefix /home2/data/Projects/CWAS/figures/fig_03/C_overlap.nii.gz
#
