def test_filter(self):
transcript_a = Transcript('transcriptA')
transcript_a.add_coverage(10)
transcript_a.add_coverage(10)
transcript_a.add_coverage(10)
transcript_a.add_coverage(0)
self.assertEqual(transcript_a.bases, 30)
self.assertEqual(transcript_a.coverage_base, 3)
self.assertEqual(transcript_a.length, 4)
self.assertFalse(transcript_a.filter(1, 10))
self.assertFalse(transcript_a.filter(0.5, 100))
self.assertTrue(transcript_a.filter(0.5, 5))
def test_add_covereage(self):
transcript_a = Transcript('transcriptA')
transcript_a.add_coverage(10)
transcript_a.add_coverage(10)
transcript_a.add_coverage(10)
transcript_a.add_coverage(0)
self.assertEqual(transcript_a.bases, 30)
self.assertEqual(transcript_a.coverage_base, 3)
self.assertEqual(transcript_a.length, 4)
def test_add_covereage(self):
transcript_a = Transcript('transcriptA')
transcript_a.add_coverage(10)
transcript_a.add_coverage(10)
transcript_a.add_coverage(10)
transcript_a.add_coverage(0)
self.assertEqual(transcript_a.bases, 30)
self.assertEqual(transcript_a.coverage_base, 3)
self.assertEqual(transcript_a.length, 4)
def test_create_transcript(self):
transcript_a = Transcript('transcriptA')
self.assertEqual(transcript_a.id, 'transcriptA')
self.assertEqual(transcript_a.coverage_base, 0)
self.assertEqual(transcript_a.length, 0)
def test_filter(self):
transcript_a = Transcript('transcriptA')
transcript_a.add_coverage(10)
transcript_a.add_coverage(10)
transcript_a.add_coverage(10)
transcript_a.add_coverage(0)
self.assertEqual(transcript_a.bases, 30)
self.assertEqual(transcript_a.coverage_base, 3)
self.assertEqual(transcript_a.length, 4)
self.assertFalse(transcript_a.filter(1, 10))
self.assertFalse(transcript_a.filter(0.5, 100))
self.assertTrue(transcript_a.filter(0.5, 5))