def get_example_proto(row, features):
"""
Get an Example protobuf from a dataframe row
Args:
- row: pandas DataFrame row
- features: configuration for all features
"""
features_dict = dict()
for feature_info in features:
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
# FIXME
# When applying functions with axis=1, pandas performs upcasting,
# so if we have a mix of floats/ints, converts everything to float
# that breaks this part of the code. Example:
# https://stackoverflow.com/questions/47143631/
# how-do-i-preserve-datatype-when-using-apply-row-wise-in-pandas-dataframe
features_dict[feature_name] = feature_fn(
[row[feature_name]]
if not pd.isna(row[feature_name])
else [feature_info["default_value"]]
)
return train.Example(features=train.Features(feature=features_dict))
def get_sequence_example_proto(group, context_features, sequence_features):
"""
Get a sequence example protobuf from a dataframe group
Args:
- group: pandas dataframe group
- context_features: feature configuration for context
- sequence_features: feature configuration for sequence
"""
sequence_features_dict = dict()
context_features_dict = dict()
for feature_info in context_features:
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
context_features_dict[feature_name] = feature_fn([group[feature_name].tolist()[0]])
for feature_info in sequence_features:
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
if feature_info["tfrecord_type"] == SequenceExampleTypeKey.SEQUENCE:
sequence_features_dict[feature_name] = train.FeatureList(
feature=[feature_fn(group[feature_name].tolist())]
)
return train.SequenceExample(
context=train.Features(feature=context_features_dict),
feature_lists=train.FeatureLists(feature_list=sequence_features_dict),
)
def _get_sequence_example_proto(group, feature_config: FeatureConfig):
"""
Get a sequence example protobuf from a dataframe group
Args:
- group: pandas dataframe group
"""
sequence_features_dict = dict()
context_features_dict = dict()
for feature_info in feature_config.get_context_features():
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
context_features_dict[feature_name] = feature_fn(
[group[feature_name].tolist()[0]])
for feature_info in feature_config.get_sequence_features():
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
if feature_info["tfrecord_type"] == TFRecordTypeKey.SEQUENCE:
sequence_features_dict[feature_name] = train.FeatureList(
feature=[feature_fn(group[feature_name].tolist())])
sequence_example_proto = train.SequenceExample(
context=train.Features(feature=context_features_dict),
feature_lists=train.FeatureLists(feature_list=sequence_features_dict),
)
return sequence_example_proto
def process_folder(folder_path, folder_csv, img_label, test_writer,
train_writer):
folder_files = filter(lambda f: f.endswith('.jpg'), listdir(folder_path))
ex_test, ex_train = 0, 0
for img_name in folder_files:
img_data = folder_csv.get(img_name, None)
if img_data is None:
print('Unable to retrieve data for {}'.format(img_name))
else:
img = load_img(path.join(folder_path, img_name), img_data)
if img is not None:
assert img.shape == (300, 300, 3)
feature = {
'label': int64_feature(img_label),
'image': bytes_feature(img.tostring())
}
example = train.Example(features=train.Features(
feature=feature))
if put_in_training_set():
train_writer.write(example.SerializeToString())
ex_train += 1
else:
test_writer.write(example.SerializeToString())
ex_test += 1
return ex_test, ex_train
def create_example(image_path):
assert type(image_path) is types.StringType, 'image_path: passed object of incorrect type'
image_data = open(image_path, 'rb').read()
class_label, class_name = _get_tf_class(os.path.split(image_path)[0])
return tft.Example(features=tft.Features(feature={
'image/label': _int64_feature(class_label),
'image/encoded': _bytes_feature(tfc.as_bytes(image_data)),
}))
def record_writer(self, label, name, writer):
""" Write an specific example on a writer tensor
record
:param label: image label
:param name: image filename
:param writer: tensor record object
:return:
"""
image = load_img(name, target_size=self.shape)
feature = dict(image=_bytes_feature(
img_to_array(image, dtype='uint8').tostring()),
label=_int64_feature(label))
features = train.Features(feature=feature)
samples = train.Example(features=features)
writer.write(samples.SerializeToString())
def get_example_proto(row, features):
"""
Get an Example protobuf from a dataframe row
Args:
- row: pandas DataFrame row
- features: configuration for all features
"""
features_dict = dict()
for feature_info in features:
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
features_dict[feature_name] = feature_fn([row[feature_name]])
return train.Example(features=train.Features(feature=features_dict))
def get_sequence_example_proto(group, context_features, sequence_features):
"""
Get a SequenceExample protobuf from a dataframe group
Parameters
----------
group : pandas dataframe group
context_features : dict
dictionary containing the configuration for all the context features
sequence_features : dict
dictionary containing the configuration for all the sequence features
Returns
-------
`SequenceExample` object
SequenceExample object loaded the dataframe group
"""
sequence_features_dict = dict()
context_features_dict = dict()
for feature_info in context_features:
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
feature_val = group[feature_name].tolist()[0]
context_features_dict[feature_name] = feature_fn(
feature_val if isinstance(feature_val, list) else [feature_val]
)
for feature_info in sequence_features:
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
if feature_info["tfrecord_type"] == SequenceExampleTypeKey.SEQUENCE:
sequence_features_dict[feature_name] = train.FeatureList(
feature=[
feature_fn(f) if isinstance(f, list) else feature_fn([f])
for f in group[feature_name].tolist()
]
)
return train.SequenceExample(
context=train.Features(feature=context_features_dict),
feature_lists=train.FeatureLists(feature_list=sequence_features_dict),
)
def get_example_proto(row, features):
"""
Get an Example protobuf from a pandas dataframe row
Parameters
----------
row : pandas DataFrame row
pandas dataframe row to be converted to an example proto
features : dict
dictionary containing configuration for all features
Returns
-------
`Example` protobuffer object
Example object loaded from the specified row
"""
features_dict = dict()
for feature_info in features:
feature_name = feature_info["name"]
feature_fn = _get_feature_fn(feature_info["dtype"])
# FIXME
# When applying functions with axis=1, pandas performs upcasting,
# so if we have a mix of floats/ints, converts everything to float
# that breaks this part of the code. Example:
# https://stackoverflow.com/questions/47143631/
# how-do-i-preserve-datatype-when-using-apply-row-wise-in-pandas-dataframe
if feature_name not in row:
raise Exception(
"Could not find column {} in record: {}".format(feature_name, str(row))
)
feature_val = (
row[feature_name] if not pd.isna(row[feature_name]) else feature_info["default_value"]
)
features_dict[feature_name] = feature_fn(
feature_val if isinstance(feature_val, list) else [feature_val]
)
return train.Example(features=train.Features(feature=features_dict))
