def _split_generators(self, dl_manager: tfds.download.DownloadManager):
"""Return SplitGenerators."""
data_file = join(dl_manager.manual_dir,
'mimic_benchmarking_phenotyping.tar.gz')
extracted_path = dl_manager.extract(data_file)
train_dir = join(extracted_path, 'train')
train_listfile = join(extracted_path, 'train_listfile.csv')
val_dir = train_dir
val_listfile = join(extracted_path, 'val_listfile.csv')
test_dir = join(extracted_path, 'test')
test_listfile = join(extracted_path, 'test_listfile.csv')
return [
tfds.core.SplitGenerator(name=tfds.Split.TRAIN,
gen_kwargs={
'data_dir': train_dir,
'listfile': train_listfile
}),
tfds.core.SplitGenerator(name=tfds.Split.VALIDATION,
gen_kwargs={
'data_dir': val_dir,
'listfile': val_listfile
}),
tfds.core.SplitGenerator(name=tfds.Split.TEST,
gen_kwargs={
'data_dir': test_dir,
'listfile': test_listfile
}),
]
def _split_generators(self, dl_manager: tfds.download.DownloadManager):
"""Download the data and define splits."""
#data_path is a pathlib-like `Path('<manual_dir>/data.zip')`
archive_path = dl_manager.manual_dir / 'brazilian_cerrado_dataset.zip'
# Extract the manually downloaded `data.zip`
extracted_path = dl_manager.extract(archive_path)
#extracted_path = dl_manager.download_and_extract("https://homepages.dcc.ufmg.br/~keiller.nogueira/datasets/brazilian_cerrado_dataset.zip")
# extracted_path =Path('/home/ami-m-017/Documents/MsComputerScience/research')
# dl_manager returns pathlib-like objects with `path.read_text()`,
# `path.iterdir()`,...
return {
'fold1':
self._generate_examples(
path=extracted_path /
'Brazilian_Cerrado_Savana_Scenes_Dataset/folds/fold1'),
'fold2':
self._generate_examples(
path=extracted_path /
'Brazilian_Cerrado_Savana_Scenes_Dataset/folds/fold2'),
'fold3':
self._generate_examples(
path=extracted_path /
'Brazilian_Cerrado_Savana_Scenes_Dataset/folds/fold3'),
'fold4':
self._generate_examples(
path=extracted_path /
'Brazilian_Cerrado_Savana_Scenes_Dataset/folds/fold4'),
'fold5':
self._generate_examples(
path=extracted_path /
'Brazilian_Cerrado_Savana_Scenes_Dataset/folds/fold5'),
}
def _split_generators(self, dl_manager: tfds.download.DownloadManager):
"""
downloads and splits data
Returns SplitGenerators.
This dataset was created following the guide:
https://www.tensorflow.org/datasets/add_dataset
"""
input_data_path = dl_manager.extract(self.data_source_path)
images_path = input_data_path / self.pp_param['output_pp_data_dir_name']
return {
'train': self._generate_examples(images_path, 'train'),
'validation': self._generate_examples(images_path, 'val'),
'test': self._generate_examples(images_path, 'test'),
}
def _split_generators(self, dl_manager: tfds.download.DownloadManager):
"""Returns SplitGenerators."""
# TODO(kappatng): Downloads the data and defines the splits
data_path = dl_manager.extract(
os.path.join(dl_manager.manual_dir, self.builder_config.file_name))
# TODO(kappatng): Returns the Dict[split names, Iterator[Key, Example]]
return [
tfds.core.SplitGenerator(
name=tfds.Split.TRAIN,
gen_kwargs={
"images_dir_path":
os.path.join(
data_path,
"global/cscratch1/sd/jialiu/kappaTNG/COSMOS/"),
},
),
]
def _split_generators(self, dl_manager: tfds.download.DownloadManager):
"""
downloads and splits data
Returns SplitGenerators.
This dataset was created following the guide:
https://www.tensorflow.org/datasets/add_dataset
"""
input_data_path = dl_manager.extract(self.data_source_path)
images_path = input_data_path / self.pp_param['output_pp_data_dir_name']
# Create 10 sets where each one have a different degradation level
# (form 0% degradation to 90% degradation)
return {
# 0% degradation
'train_0': self._generate_examples(images_path, 'train', 0),
'val_0': self._generate_examples(images_path, 'val', 0),
'test_0': self._generate_examples(images_path, 'test', 0),
# 10% degradation
'train_10': self._generate_examples(images_path, 'train', 0.1),
'val_10': self._generate_examples(images_path, 'val', 0.1),
'test_10': self._generate_examples(images_path, 'test', 0.1),
# 20% degradation
'train_20': self._generate_examples(images_path, 'train', 0.2),
'val_20': self._generate_examples(images_path, 'val', 0.2),
'test_20': self._generate_examples(images_path, 'test', 0.2),
# 30% degradation
'train_30': self._generate_examples(images_path, 'train', 0.3),
'val_30': self._generate_examples(images_path, 'val', 0.3),
'test_30': self._generate_examples(images_path, 'test', 0.3),
# 40% degradation
'train_40': self._generate_examples(images_path, 'train', 0.4),
'val_40': self._generate_examples(images_path, 'val', 0.4),
'test_40': self._generate_examples(images_path, 'test', 0.4),
# 50% degradation
'train_50': self._generate_examples(images_path, 'train', 0.5),
'val_50': self._generate_examples(images_path, 'val', 0.5),
'test_50': self._generate_examples(images_path, 'test', 0.5),
# 60% degradation
'train_60': self._generate_examples(images_path, 'train', 0.6),
'val_60': self._generate_examples(images_path, 'val', 0.6),
'test_60': self._generate_examples(images_path, 'test', 0.6),
# 70% degradation
'train_70': self._generate_examples(images_path, 'train', 0.7),
'val_70': self._generate_examples(images_path, 'val', 0.7),
'test_70': self._generate_examples(images_path, 'test', 0.7),
# 80% degradation
'train_80': self._generate_examples(images_path, 'train', 0.8),
'val_80': self._generate_examples(images_path, 'val', 0.8),
'test_80': self._generate_examples(images_path, 'test', 0.8),
# 90% degradation
'train_90': self._generate_examples(images_path, 'train', 0.9),
'val_90': self._generate_examples(images_path, 'val', 0.9),
'test_90': self._generate_examples(images_path, 'test', 0.9),
}
