def test_iodi_study_intervention_duplicate(self):
""" Tests the IODI insertion of duplicate `StudyIntervention` records
to ensure deduplication functions as intended.
"""
# Create fixtures.
study_id, _ = create_study(dal=self.dal)
intervention_id, _ = create_intervention(dal=self.dal)
intervention_02_id, _ = create_intervention(
dal=self.dal,
name="new_name",
)
# IODI a new `StudyIntervention` record.
obj_id = self.dal.iodi_study_intervention(
study_id=study_id,
intervention_id=intervention_id,
)
# The PK should be `1` as this is the first record.
self.assertEqual(obj_id, 1)
# IODI the same `StudyIntervention` record as before.
obj_id = self.dal.iodi_study_intervention(
study_id=study_id,
intervention_id=intervention_id,
)
# The PK should still be `1` as the record was identical thus no
# insertion should've occured.
self.assertEqual(obj_id, 1)
# IODI a new `StudyIntervention` record.
obj_id = self.dal.iodi_study_intervention(
study_id=study_id,
intervention_id=intervention_02_id,
)
# The PK should be `3` as the previous failed INSERT will have
# incremented the PK by 1.
self.assertEqual(obj_id, 3)
# IODU the same `StudyIntervention` record as before.
obj_id = self.dal.iodi_study_intervention(
study_id=study_id,
intervention_id=intervention_02_id,
)
# The PK should still be `3` as the record is identical to the one
# before.
self.assertEqual(obj_id, 3)
def test_iodi_get_study_intervention(self):
""" Tests the insertion of a `StudyIntervention` record via the
`iodi_study_intervention` method of the `DalClinicalTrials` class
and its retrieval via the get` method.
"""
# Create fixtures.
study_id, _ = create_study(dal=self.dal)
intervention_id, _ = create_intervention(dal=self.dal)
# IODI a new `StudyIntervention` record.
obj_id = self.dal.iodi_study_intervention(
study_id=study_id,
intervention_id=intervention_id,
)
self.assertEqual(obj_id, 1)
# Retrieve the new record.
obj = self.dal.get(StudyIntervention, obj_id) # type: StudyIntervention
# Assert that the different fields of the record match.
self.assertEqual(obj.study_intervention_id, 1)
self.assertEqual(obj.study_id, study_id)
self.assertEqual(obj.intervention_id, intervention_id)
def test_delete_intervention_alias(self):
""" Tests the deletion of a `InterventionAlias` record via the
`delete` method of the `DalClinicalTrials` class.
"""
# Create an `Alias` record as a fixture.
alias_id, _ = create_alias(dal=self.dal)
# Create an `Intervention` record as a fixture.
intervention_id, _ = create_intervention(dal=self.dal)
# IODI a new `InterventionAlias` record.
obj_id = self.dal.iodi_intervention_alias(
alias_id=alias_id,
intervention_id=intervention_id,
)
self.assertEqual(obj_id, 1)
# Delete the new record.
self.dal.delete(InterventionAlias, obj_id)
# (Attempt to) retrieve the deleted record.
obj = self.dal.get(
InterventionAlias,
obj_id,
) # type: InterventionAlias
self.assertIsNone(obj)
def test_iodi_get_intervention_alias(self):
""" Tests the insertion of a `InterventionAlias` record via the
`iodi_intervention_alias` method of the `DalClinicalTrials` class
and its retrieval via the `get` method.
"""
# Create an `Alias` record as a fixture.
alias_id, _ = create_alias(dal=self.dal)
# Create an `Intervention` record as a fixture.
intervention_id, _ = create_intervention(dal=self.dal)
# IODI a new `InterventionAlias` record.
obj_id = self.dal.iodi_intervention_alias(
alias_id=alias_id,
intervention_id=intervention_id,
)
self.assertEqual(obj_id, 1)
# Retrieve the new record.
obj = self.dal.get(
InterventionAlias,
obj_id,
) # type: InterventionAlias
# Assert that the different fields of the record match.
self.assertEqual(obj.intervention_alias_id, 1)
self.assertEqual(obj.alias_id, alias_id)
self.assertEqual(obj.intervention_id, intervention_id)
def test_iodi_intervention_alias_duplicate(self):
""" Tests the IODI insertion of duplicate `InterventionAlias` records
to ensure deduplication functions as intended.
"""
# Create two `Alias` records as fixtures.
alias_id, _ = create_alias(dal=self.dal)
alias_02_id, _ = create_alias(dal=self.dal, alias="NewAlias")
# Create an `Intervention` record as a fixture.
intervention_id, _ = create_intervention(dal=self.dal)
# IODI a new `InterventionAlias` record.
obj_id = self.dal.iodi_intervention_alias(
alias_id=alias_id,
intervention_id=intervention_id,
)
self.assertEqual(obj_id, 1)
# IODI an identical `Intervention` record.
obj_id = self.dal.iodi_intervention_alias(
alias_id=alias_id,
intervention_id=intervention_id,
)
self.assertEqual(obj_id, 1)
# IODI a new `Intervention` record.
obj_id = self.dal.iodi_intervention_alias(
alias_id=alias_02_id,
intervention_id=intervention_id,
)
self.assertEqual(obj_id, 3)
# IODI the same `Intervention` record as before.
obj_id = self.dal.iodi_intervention_alias(
alias_id=alias_02_id,
intervention_id=intervention_id,
)
self.assertEqual(obj_id, 3)
def test_delete_study_intervention(self):
""" Tests the deletion of a `StudyIntervention` record via the `delete`
method of the `DalClinicalTrials` class.
"""
# Create fixtures.
study_id, _ = create_study(dal=self.dal)
intervention_id, _ = create_intervention(dal=self.dal)
# IODI a new `StudyIntervention` record.
obj_id = self.dal.iodi_study_intervention(
study_id=study_id,
intervention_id=intervention_id,
)
self.assertEqual(obj_id, 1)
# Delete the new record.
self.dal.delete(StudyIntervention, obj_id)
# (Attempt to) retrieve the deleted record.
obj = self.dal.get(StudyIntervention, obj_id) # type: StudyIntervention
self.assertIsNone(obj)
