def test_validate_with_preprocessing_defaults():
config = {
"input_features": [
audio_feature("/tmp/destination_folder", preprocessing=AudioFeatureMixin.preprocessing_defaults),
bag_feature(preprocessing=BagFeatureMixin.preprocessing_defaults),
binary_feature(preprocessing=BinaryFeatureMixin.preprocessing_defaults),
category_feature(preprocessing=CategoryFeatureMixin.preprocessing_defaults),
date_feature(preprocessing=DateFeatureMixin.preprocessing_defaults),
h3_feature(preprocessing=H3FeatureMixin.preprocessing_defaults),
image_feature("/tmp/destination_folder", preprocessing=ImageFeatureMixin.preprocessing_defaults),
numerical_feature(preprocessing=NumericalFeatureMixin.preprocessing_defaults),
sequence_feature(preprocessing=SequenceFeatureMixin.preprocessing_defaults),
set_feature(preprocessing=SetFeatureMixin.preprocessing_defaults),
text_feature(preprocessing=TextFeatureMixin.preprocessing_defaults),
timeseries_feature(preprocessing=TimeseriesFeatureMixin.preprocessing_defaults),
vector_feature(preprocessing=VectorFeatureMixin.preprocessing_defaults),
],
"output_features": [{"name": "target", "type": "category"}],
"training": {
"decay": True,
"learning_rate": 0.001,
"validation_field": "target",
"validation_metric": "accuracy",
},
}
validate_config(config)
config = merge_with_defaults(config)
validate_config(config)
def test_timeseries_feature(enc_encoder):
# synthetic time series tensor
timeseries_tensor = torch.randn([BATCH_SIZE, SEQ_SIZE], dtype=torch.float32)
# generate feature config
timeseries_feature_config = timeseries_feature(
encoder=enc_encoder,
max_len=SEQ_SIZE,
fc_layers=[{"fc_size": DEFAULT_FC_SIZE}],
# simulated parameters determined by pre-processing
max_sequence_length=SEQ_SIZE,
)
# instantiate input feature object
timeseries_input_feature = TimeseriesInputFeature(timeseries_feature_config)
# pass synthetic tensor through input feature
encoder_output = timeseries_input_feature(timeseries_tensor)
# confirm correctness of the encoder output
assert isinstance(encoder_output, dict)
assert "encoder_output" in encoder_output
assert isinstance(encoder_output["encoder_output"], torch.Tensor)
if enc_encoder == "passthrough":
assert encoder_output["encoder_output"].shape == (BATCH_SIZE, SEQ_SIZE, 1)
else:
assert encoder_output["encoder_output"].shape == (BATCH_SIZE, DEFAULT_FC_SIZE)
def test_experiment_timeseries(csv_filename):
input_features = [timeseries_feature()]
output_features = [binary_feature()]
# Generate test data
rel_path = generate_data(input_features, output_features, csv_filename)
input_features[0]["encoder"] = "transformer"
run_experiment(input_features, output_features, dataset=rel_path)
def test_experiment_timeseries(csv_filename):
input_features = [timeseries_feature()]
output_features = [binary_feature()]
encoders2 = ['transformer']
# Generate test data
rel_path = generate_data(input_features, output_features, csv_filename)
for encoder in encoders2:
input_features[0]['encoder'] = encoder
run_experiment(input_features, output_features, dataset=rel_path)
def test_experiment_timeseries(csv_filename):
input_features = [timeseries_feature()]
output_features = [binary_feature()]
encoders2 = [
'rnn', 'cnnrnn', 'stacked_cnn', 'parallel_cnn', 'stacked_parallel_cnn'
]
# Generate test data
rel_path = generate_data(input_features, output_features, csv_filename)
for encoder in encoders2:
input_features[0]['encoder'] = encoder
run_experiment(input_features, output_features, data_csv=rel_path)
def test_config_features():
all_input_features = [
audio_feature("/tmp/destination_folder"),
bag_feature(),
binary_feature(),
category_feature(),
date_feature(),
h3_feature(),
image_feature("/tmp/destination_folder"),
number_feature(),
sequence_feature(),
set_feature(),
text_feature(),
timeseries_feature(),
vector_feature(),
]
all_output_features = [
binary_feature(),
category_feature(),
number_feature(),
sequence_feature(),
set_feature(),
text_feature(),
vector_feature(),
]
# validate config with all features
config = {
"input_features": all_input_features,
"output_features": all_output_features,
}
validate_config(config)
# make sure all defaults provided also registers as valid
config = merge_with_defaults(config)
validate_config(config)
# test various invalid output features
input_only_features = [
feature for feature in all_input_features
if feature["type"] not in output_type_registry.keys()
]
for input_feature in input_only_features:
config = {
"input_features": all_input_features,
"output_features": all_output_features + [input_feature],
}
dtype = input_feature["type"]
with pytest.raises(ValidationError,
match=rf"^'{dtype}' is not one of .*"):
validate_config(config)
def test_config_features():
all_input_features = [
audio_feature('/tmp/destination_folder'),
bag_feature(),
binary_feature(),
category_feature(),
date_feature(),
h3_feature(),
image_feature('/tmp/destination_folder'),
numerical_feature(),
sequence_feature(),
set_feature(),
text_feature(),
timeseries_feature(),
vector_feature(),
]
all_output_features = [
binary_feature(),
category_feature(),
numerical_feature(),
sequence_feature(),
set_feature(),
text_feature(),
vector_feature(),
]
# validate config with all features
config = {
'input_features': all_input_features,
'output_features': all_output_features,
}
validate_config(config)
# make sure all defaults provided also registers as valid
config = merge_with_defaults(config)
validate_config(config)
# test various invalid output features
input_only_features = [
feature for feature in all_input_features
if feature['type'] not in OUTPUT_FEATURE_TYPES
]
for input_feature in input_only_features:
config = {
'input_features': all_input_features,
'output_features': all_output_features + [input_feature],
}
dtype = input_feature['type']
with pytest.raises(ValidationError,
match=rf"^'{dtype}' is not one of .*"):
validate_config(config)
def test_cnnrnn_with_fc_layers(csv_filename):
cnnrnn_with_fc_layers_dict = {
'encoder': 'cnnrnn',
'fc_layers': [{
'fc_size': 64
}, {
'fc_size': 64
}]
}
input_features = [timeseries_feature()]
output_features = [binary_feature()]
input_features[0].update(cnnrnn_with_fc_layers_dict)
rel_path = generate_data(input_features, output_features, csv_filename)
run_experiment(input_features, output_features, data_csv=rel_path)
def test_torchscript_e2e_timeseries(tmpdir, csv_filename):
data_csv_path = os.path.join(tmpdir, csv_filename)
input_features = [
timeseries_feature(),
]
output_features = [
binary_feature(),
]
backend = LocalTestBackend()
config = {
"input_features": input_features,
"output_features": output_features,
TRAINER: {
"epochs": 2
}
}
training_data_csv_path = generate_data(input_features, output_features,
data_csv_path)
validate_torchscript_outputs(tmpdir, config, backend,
training_data_csv_path)
def test_torchscript(csv_filename, should_load_model):
#######
# Setup
#######
with tempfile.TemporaryDirectory() as tmpdir:
dir_path = tmpdir
data_csv_path = os.path.join(tmpdir, csv_filename)
image_dest_folder = os.path.join(tmpdir, "generated_images")
audio_dest_folder = os.path.join(tmpdir, "generated_audio")
# Single sequence input, single category output
input_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
vector_feature(),
image_feature(image_dest_folder),
audio_feature(audio_dest_folder),
timeseries_feature(),
date_feature(),
date_feature(),
h3_feature(),
set_feature(vocab_size=3),
bag_feature(vocab_size=3),
]
output_features = [
category_feature(vocab_size=3),
binary_feature(),
numerical_feature(),
set_feature(vocab_size=3),
vector_feature()
# TODO(#1333): Re-enable.
# sequence_feature(vocab_size=3),
# text_feature(vocab_size=3),
]
predictions_column_name = "{}_predictions".format(output_features[0]["name"])
# Generate test data
data_csv_path = generate_data(input_features, output_features, data_csv_path)
#############
# Train model
#############
backend = LocalTestBackend()
config = {"input_features": input_features, "output_features": output_features, "training": {"epochs": 2}}
ludwig_model = LudwigModel(config, backend=backend)
ludwig_model.train(
dataset=data_csv_path,
skip_save_training_description=True,
skip_save_training_statistics=True,
skip_save_model=True,
skip_save_progress=True,
skip_save_log=True,
skip_save_processed_input=True,
)
###################
# save Ludwig model
###################
ludwigmodel_path = os.path.join(dir_path, "ludwigmodel")
shutil.rmtree(ludwigmodel_path, ignore_errors=True)
ludwig_model.save(ludwigmodel_path)
###################
# load Ludwig model
###################
if should_load_model:
ludwig_model = LudwigModel.load(ludwigmodel_path, backend=backend)
##############################
# collect weight tensors names
##############################
original_predictions_df, _ = ludwig_model.predict(dataset=data_csv_path)
original_weights = deepcopy(list(ludwig_model.model.parameters()))
#################
# save torchscript
#################
torchscript_path = os.path.join(dir_path, "torchscript")
shutil.rmtree(torchscript_path, ignore_errors=True)
ludwig_model.model.save_torchscript(torchscript_path)
###################################################
# load Ludwig model, obtain predictions and weights
###################################################
ludwig_model = LudwigModel.load(ludwigmodel_path, backend=backend)
loaded_prediction_df, _ = ludwig_model.predict(dataset=data_csv_path)
loaded_weights = deepcopy(list(ludwig_model.model.parameters()))
#####################################################
# restore torchscript, obtain predictions and weights
#####################################################
training_set_metadata_json_fp = os.path.join(ludwigmodel_path, TRAIN_SET_METADATA_FILE_NAME)
dataset, training_set_metadata = preprocess_for_prediction(
ludwig_model.config,
dataset=data_csv_path,
training_set_metadata=training_set_metadata_json_fp,
backend=backend,
)
restored_model = torch.jit.load(torchscript_path)
# Check the outputs for one of the features for correctness
# Here we choose the first output feature (categorical)
of_name = list(ludwig_model.model.output_features.keys())[0]
data_to_predict = {
name: torch.from_numpy(dataset.dataset[feature.proc_column])
for name, feature in ludwig_model.model.input_features.items()
}
# Get predictions from restored torchscript.
logits = restored_model(data_to_predict)
restored_predictions = torch.argmax(
output_feature_utils.get_output_feature_tensor(logits, of_name, "logits"), -1
)
restored_predictions = [training_set_metadata[of_name]["idx2str"][idx] for idx in restored_predictions]
restored_weights = deepcopy(list(restored_model.parameters()))
#########
# Cleanup
#########
shutil.rmtree(ludwigmodel_path, ignore_errors=True)
shutil.rmtree(torchscript_path, ignore_errors=True)
###############################################
# Check if weights and predictions are the same
###############################################
# Check to weight values match the original model.
assert utils.is_all_close(original_weights, loaded_weights)
assert utils.is_all_close(original_weights, restored_weights)
# Check that predictions are identical to the original model.
assert np.all(original_predictions_df[predictions_column_name] == loaded_prediction_df[predictions_column_name])
assert np.all(original_predictions_df[predictions_column_name] == restored_predictions)
def test_savedmodel(csv_filename, should_load_model):
#######
# Setup
#######
with tempfile.TemporaryDirectory() as tmpdir:
dir_path = tmpdir
data_csv_path = os.path.join(tmpdir, csv_filename)
image_dest_folder = os.path.join(tmpdir, 'generated_images')
audio_dest_folder = os.path.join(tmpdir, 'generated_audio')
# Single sequence input, single category output
input_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
vector_feature(),
image_feature(image_dest_folder),
audio_feature(audio_dest_folder),
timeseries_feature(),
date_feature(),
h3_feature(),
set_feature(vocab_size=3),
bag_feature(vocab_size=3),
]
output_features = [
category_feature(vocab_size=3),
binary_feature(),
numerical_feature(),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
set_feature(vocab_size=3),
vector_feature()
]
predictions_column_name = '{}_predictions'.format(
output_features[0]['name'])
# Generate test data
data_csv_path = generate_data(input_features, output_features,
data_csv_path)
#############
# Train model
#############
backend = LocalTestBackend()
config = {
'input_features': input_features,
'output_features': output_features,
'training': {
'epochs': 2
}
}
ludwig_model = LudwigModel(config, backend=backend)
ludwig_model.train(
dataset=data_csv_path,
skip_save_training_description=True,
skip_save_training_statistics=True,
skip_save_model=True,
skip_save_progress=True,
skip_save_log=True,
skip_save_processed_input=True,
)
###################
# save Ludwig model
###################
ludwigmodel_path = os.path.join(dir_path, 'ludwigmodel')
shutil.rmtree(ludwigmodel_path, ignore_errors=True)
ludwig_model.save(ludwigmodel_path)
###################
# load Ludwig model
###################
if should_load_model:
ludwig_model = LudwigModel.load(ludwigmodel_path, backend=backend)
##############################
# collect weight tensors names
##############################
original_predictions_df, _ = ludwig_model.predict(
dataset=data_csv_path)
original_weights = deepcopy(ludwig_model.model.trainable_variables)
#################
# save savedmodel
#################
savedmodel_path = os.path.join(dir_path, 'savedmodel')
shutil.rmtree(savedmodel_path, ignore_errors=True)
ludwig_model.model.save_savedmodel(savedmodel_path)
###################################################
# load Ludwig model, obtain predictions and weights
###################################################
ludwig_model = LudwigModel.load(ludwigmodel_path, backend=backend)
loaded_prediction_df, _ = ludwig_model.predict(dataset=data_csv_path)
loaded_weights = deepcopy(ludwig_model.model.trainable_variables)
#################################################
# restore savedmodel, obtain predictions and weights
#################################################
training_set_metadata_json_fp = os.path.join(
ludwigmodel_path, TRAIN_SET_METADATA_FILE_NAME)
dataset, training_set_metadata = preprocess_for_prediction(
ludwig_model.config,
dataset=data_csv_path,
training_set_metadata=training_set_metadata_json_fp,
backend=backend,
)
restored_model = tf.saved_model.load(savedmodel_path)
# Check the outputs for one of the features for correctness
# Here we choose the first output feature (categorical)
of_name = list(ludwig_model.model.output_features.keys())[0]
data_to_predict = {
name: tf.convert_to_tensor(dataset.dataset[feature.proc_column],
dtype=feature.get_input_dtype())
for name, feature in ludwig_model.model.input_features.items()
}
logits = restored_model(data_to_predict, False, None)
restored_predictions = tf.argmax(logits[of_name]['logits'],
-1,
name='predictions_{}'.format(of_name))
restored_predictions = tf.map_fn(
lambda idx: training_set_metadata[of_name]['idx2str'][idx],
restored_predictions,
dtype=tf.string)
restored_weights = deepcopy(restored_model.trainable_variables)
#########
# Cleanup
#########
shutil.rmtree(ludwigmodel_path, ignore_errors=True)
shutil.rmtree(savedmodel_path, ignore_errors=True)
###############################################
# Check if weights and predictions are the same
###############################################
# check for same number of weights as original model
assert len(original_weights) == len(loaded_weights)
assert len(original_weights) == len(restored_weights)
# check to ensure weight valuess match the original model
loaded_weights_match = np.all([
np.all(
np.isclose(original_weights[i].numpy(),
loaded_weights[i].numpy()))
for i in range(len(original_weights))
])
original_weights = sorted(original_weights, key=lambda w: w.name)
restored_weights = sorted(restored_weights, key=lambda w: w.name)
restored_weights_match = np.all([
np.all(
np.isclose(original_weights[i].numpy(),
restored_weights[i].numpy()))
for i in range(len(original_weights))
])
assert loaded_weights_match and restored_weights_match
# Are predictions identical to original ones?
loaded_predictions_match = np.all(
original_predictions_df[predictions_column_name] ==
loaded_prediction_df[predictions_column_name])
restored_predictions_match = np.all(
original_predictions_df[predictions_column_name] ==
restored_predictions.numpy().astype('str'))
assert loaded_predictions_match and restored_predictions_match
assert utils.is_all_close(
feature_values, feature_values_expected
), f'feature "{feature_name}" value mismatch.'
@pytest.mark.parametrize(
"feature",
[
number_feature(),
binary_feature(),
category_feature(vocab_size=3),
bag_feature(vocab_size=3),
set_feature(vocab_size=3),
text_feature(vocab_size=3),
sequence_feature(vocab_size=3),
timeseries_feature(),
h3_feature(),
# TODO: future support
# audio_feature(), # default BACKFILL strategy is unintuitive at inference time
# image_feature(), # default BACKFILL strategy is unintuitive at inference time
# vector_feature(), # does not have a missing_value_strategy
# date_feature(), # default fill with datetime.now() strategy is not scriptable
],
)
def test_torchscript_preproc_with_nans(tmpdir, csv_filename, feature):
data_csv_path = os.path.join(tmpdir, csv_filename)
input_features = [
feature,
]
output_features = [
binary_feature(),
def test_model_save_reload_api(csv_filename, tmp_path):
tf.random.set_seed(1234)
image_dest_folder = os.path.join(os.getcwd(), 'generated_images')
audio_dest_folder = os.path.join(os.getcwd(), 'generated_audio')
input_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3, encoder='rnn', cell_type='lstm',
num_layers=2, bidirections=True),
vector_feature(),
image_feature(image_dest_folder),
audio_feature(audio_dest_folder, encoder='stacked_cnn'),
timeseries_feature(encoder='parallel_cnn'),
sequence_feature(vocab_size=3, encoder='stacked_parallel_cnn'),
date_feature(),
h3_feature(),
set_feature(vocab_size=3),
bag_feature(vocab_size=3),
]
output_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
set_feature(vocab_size=3),
vector_feature(),
]
# Generate test data
data_csv_path = generate_data(input_features, output_features,
csv_filename)
#############
# Train model
#############
config = {
'input_features': input_features,
'output_features': output_features,
'training': {'epochs': 2}
}
data_df = read_csv(data_csv_path)
data_df[SPLIT] = get_split(data_df)
training_set, test_set, validation_set = split_dataset_ttv(
data_df,
SPLIT
)
training_set = pd.DataFrame(training_set)
validation_set = pd.DataFrame(validation_set)
test_set = pd.DataFrame(test_set)
# create sub-directory to store results
results_dir = tmp_path / 'results'
results_dir.mkdir()
# perform initial model training
backend = LocalTestBackend()
ludwig_model1 = LudwigModel(config, backend=backend)
_, _, output_dir = ludwig_model1.train(
training_set=training_set,
validation_set=validation_set,
test_set=test_set,
output_directory='results' # results_dir
)
preds_1, _ = ludwig_model1.predict(dataset=validation_set)
def check_model_equal(ludwig_model2):
# Compare model predictions
preds_2, _ = ludwig_model2.predict(dataset=validation_set)
assert set(preds_1.keys()) == set(preds_2.keys())
for key in preds_1:
assert preds_1[key].dtype == preds_2[key].dtype, key
assert np.all(a == b for a, b in zip(preds_1[key], preds_2[key])), key
# assert preds_2[key].dtype == preds_3[key].dtype, key
# assert list(preds_2[key]) == list(preds_3[key]), key
# Compare model weights
# this has to be done after predicts because of TF2 lazy restoration
for if_name in ludwig_model1.model.input_features:
if1 = ludwig_model1.model.input_features[if_name]
if2 = ludwig_model2.model.input_features[if_name]
for if1_w, if2_w in zip(if1.encoder_obj.weights,
if2.encoder_obj.weights):
assert np.allclose(if1_w.numpy(), if2_w.numpy())
c1 = ludwig_model1.model.combiner
c2 = ludwig_model2.model.combiner
for c1_w, c2_w in zip(c1.weights, c2.weights):
assert np.allclose(c1_w.numpy(), c2_w.numpy())
for of_name in ludwig_model1.model.output_features:
of1 = ludwig_model1.model.output_features[of_name]
of2 = ludwig_model2.model.output_features[of_name]
for of1_w, of2_w in zip(of1.decoder_obj.weights,
of2.decoder_obj.weights):
assert np.allclose(of1_w.numpy(), of2_w.numpy())
# Test saving and loading the model explicitly
with tempfile.TemporaryDirectory() as tmpdir:
ludwig_model1.save(tmpdir)
ludwig_model_loaded = LudwigModel.load(tmpdir, backend=backend)
check_model_equal(ludwig_model_loaded)
# Test loading the model from the experiment directory
ludwig_model_exp = LudwigModel.load(
os.path.join(output_dir, 'model'),
backend=backend
)
check_model_equal(ludwig_model_exp)
def test_ray_timeseries():
input_features = [timeseries_feature()]
output_features = [number_feature()]
run_test_with_features(input_features, output_features)
def t_neuropod(csv_filename):
#######
# Setup
#######
dir_path = os.path.dirname(csv_filename)
image_dest_folder = os.path.join(os.getcwd(), 'generated_images')
audio_dest_folder = os.path.join(os.getcwd(), 'generated_audio')
input_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
vector_feature(),
image_feature(image_dest_folder),
audio_feature(audio_dest_folder),
timeseries_feature(),
date_feature(),
h3_feature(),
set_feature(vocab_size=3),
bag_feature(vocab_size=3),
]
output_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
set_feature(vocab_size=3),
vector_feature()
]
# Generate test data
data_csv_path = generate_data(input_features, output_features,
csv_filename)
#############
# Train model
#############
model_definition = {
'input_features': input_features,
'output_features': output_features,
'training': {
'epochs': 2
}
}
ludwig_model = LudwigModel(model_definition)
ludwig_model.train(
data_csv=data_csv_path,
skip_save_training_description=True,
skip_save_training_statistics=True,
skip_save_model=True,
skip_save_progress=True,
skip_save_log=True,
skip_save_processed_input=True,
)
original_predictions_df = ludwig_model.predict(data_csv=data_csv_path)
###################
# save Ludwig model
###################
ludwigmodel_path = os.path.join(dir_path, 'ludwigmodel')
shutil.rmtree(ludwigmodel_path, ignore_errors=True)
ludwig_model.save(ludwigmodel_path)
################
# build neuropod
################
neuropod_path = os.path.join(dir_path, 'neuropod')
export_neuropod(ludwigmodel_path, neuropod_path=neuropod_path)
########################
# predict using neuropod
########################
data_df = pd.read_csv(data_csv_path)
if_dict = {
input_feature['name']: np.expand_dims(
np.array([str(x) for x in data_df[input_feature['name']].tolist()],
dtype='str'), 1)
for input_feature in input_features
}
from neuropod.loader import load_neuropod
neuropod_model = load_neuropod(neuropod_path)
preds = neuropod_model.infer(if_dict)
for key in preds:
preds[key] = np.squeeze(preds[key])
#########
# cleanup
#########
# Delete the temporary data created
for path in [
ludwigmodel_path, neuropod_path, image_dest_folder,
audio_dest_folder
]:
if os.path.exists(path):
if os.path.isfile(path):
os.remove(path)
else:
shutil.rmtree(path, ignore_errors=True)
########
# checks
########
for output_feature in output_features:
output_feature_name = output_feature['name']
output_feature_type = output_feature['type']
if (output_feature_name + "_predictions" in preds
and output_feature_name + "_predictions"
in original_predictions_df):
neuropod_pred = preds[output_feature_name +
"_predictions"].tolist()
if output_feature_type == BINARY:
neuropod_pred = list(map(lambda x: str2bool(x), neuropod_pred))
if output_feature_type in {SEQUENCE, TEXT, SET}:
neuropod_pred = list(map(lambda x: x.split(), neuropod_pred))
original_pred = original_predictions_df[output_feature_name +
"_predictions"].tolist()
assert neuropod_pred == original_pred
if (output_feature_name + "_probability" in preds
and output_feature_name + "_probability"
in original_predictions_df):
neuropod_prob = preds[output_feature_name +
"_probability"].tolist()
if output_feature_type in {SEQUENCE, TEXT, SET}:
neuropod_prob = list(
map(lambda x: [float(n) for n in x.split()],
neuropod_prob))
if any(isinstance(el, list) for el in neuropod_prob):
neuropod_prob = np.array(
list(itertools.zip_longest(*neuropod_prob, fillvalue=0))).T
original_prob = original_predictions_df[output_feature_name +
"_probability"].tolist()
if any(isinstance(el, list) for el in original_prob):
original_prob = np.array(
list(itertools.zip_longest(*original_prob, fillvalue=0))).T
assert np.isclose(neuropod_prob, original_prob).all()
if (output_feature_name + "_probabilities" in preds
and output_feature_name + "_probabilities"
in original_predictions_df):
neuropod_prob = preds[output_feature_name +
"_probabilities"].tolist()
original_prob = original_predictions_df[output_feature_name +
"_probabilities"].tolist()
assert np.isclose(neuropod_prob, original_prob).all()
def test_ray_timeseries():
input_features = [timeseries_feature()]
output_features = [numerical_feature()]
run_test_parquet(input_features, output_features)
def test_model_save_reload_api(tmpdir, csv_filename, tmp_path):
torch.manual_seed(1)
random.seed(1)
np.random.seed(1)
image_dest_folder = os.path.join(os.getcwd(), "generated_images")
audio_dest_folder = os.path.join(os.getcwd(), "generated_audio")
input_features = [
binary_feature(),
number_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3,
encoder="rnn",
cell_type="lstm",
num_layers=2,
bidirections=True),
vector_feature(),
image_feature(image_dest_folder),
audio_feature(audio_dest_folder, encoder="stacked_cnn"),
timeseries_feature(encoder="parallel_cnn"),
sequence_feature(vocab_size=3, encoder="stacked_parallel_cnn"),
date_feature(),
h3_feature(),
set_feature(vocab_size=3),
bag_feature(vocab_size=3),
]
output_features = [
binary_feature(),
number_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
set_feature(vocab_size=3),
vector_feature(),
]
# Generate test data
data_csv_path = generate_data(input_features,
output_features,
csv_filename,
num_examples=50)
#############
# Train model
#############
config = {
"input_features": input_features,
"output_features": output_features,
TRAINER: {
"epochs": 2
}
}
data_df = read_csv(data_csv_path)
splitter = get_splitter("random")
training_set, validation_set, test_set = splitter.split(
data_df, LocalTestBackend())
# create sub-directory to store results
results_dir = tmp_path / "results"
results_dir.mkdir()
# perform initial model training
backend = LocalTestBackend()
ludwig_model1 = LudwigModel(config, backend=backend)
_, _, output_dir = ludwig_model1.train(
training_set=training_set,
validation_set=validation_set,
test_set=test_set,
output_directory="results", # results_dir
)
preds_1, _ = ludwig_model1.predict(dataset=validation_set)
def check_model_equal(ludwig_model2):
# Compare model predictions
preds_2, _ = ludwig_model2.predict(dataset=validation_set)
assert set(preds_1.keys()) == set(preds_2.keys())
for key in preds_1:
assert preds_1[key].dtype == preds_2[key].dtype, key
assert np.all(a == b
for a, b in zip(preds_1[key], preds_2[key])), key
# assert preds_2[key].dtype == preds_3[key].dtype, key
# assert list(preds_2[key]) == list(preds_3[key]), key
# Compare model weights
for if_name in ludwig_model1.model.input_features:
if1 = ludwig_model1.model.input_features[if_name]
if2 = ludwig_model2.model.input_features[if_name]
for if1_w, if2_w in zip(if1.encoder_obj.parameters(),
if2.encoder_obj.parameters()):
assert torch.allclose(if1_w, if2_w)
c1 = ludwig_model1.model.combiner
c2 = ludwig_model2.model.combiner
for c1_w, c2_w in zip(c1.parameters(), c2.parameters()):
assert torch.allclose(c1_w, c2_w)
for of_name in ludwig_model1.model.output_features:
of1 = ludwig_model1.model.output_features[of_name]
of2 = ludwig_model2.model.output_features[of_name]
for of1_w, of2_w in zip(of1.decoder_obj.parameters(),
of2.decoder_obj.parameters()):
assert torch.allclose(of1_w, of2_w)
ludwig_model1.save(tmpdir)
ludwig_model_loaded = LudwigModel.load(tmpdir, backend=backend)
check_model_equal(ludwig_model_loaded)
# Test loading the model from the experiment directory
ludwig_model_exp = LudwigModel.load(os.path.join(output_dir, "model"),
backend=backend)
check_model_equal(ludwig_model_exp)
def test_model_save_reload_api(csv_filename, tmp_path):
torch.manual_seed(1)
random.seed(1)
np.random.seed(1)
image_dest_folder = os.path.join(os.getcwd(), "generated_images")
audio_dest_folder = os.path.join(os.getcwd(), "generated_audio")
input_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3, encoder="rnn", cell_type="lstm", num_layers=2, bidirections=True),
vector_feature(),
image_feature(image_dest_folder),
audio_feature(audio_dest_folder, encoder="stacked_cnn"),
timeseries_feature(encoder="parallel_cnn"),
sequence_feature(vocab_size=3, encoder="stacked_parallel_cnn"),
date_feature(),
h3_feature(),
set_feature(vocab_size=3),
bag_feature(vocab_size=3),
]
output_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
<<<<<<< HEAD
# TODO(shreya): Reintroduce sequence and text after sequence output feature.
=======
# TODO(#1333): Reintroduce sequence and text after sequence output feature.
>>>>>>> upstream/master
# sequence_feature(vocab_size=3),
# text_feature(vocab_size=3),
set_feature(vocab_size=3),
vector_feature(),
]
# Generate test data
data_csv_path = generate_data(input_features, output_features, csv_filename)
#############
# Train model
#############
config = {"input_features": input_features, "output_features": output_features, "training": {"epochs": 2}}
data_df = read_csv(data_csv_path)
data_df[SPLIT] = get_split(data_df)
training_set, test_set, validation_set = split_dataset_ttv(data_df, SPLIT)
training_set = pd.DataFrame(training_set)
validation_set = pd.DataFrame(validation_set)
test_set = pd.DataFrame(test_set)
# create sub-directory to store results
results_dir = tmp_path / "results"
results_dir.mkdir()
# perform initial model training
backend = LocalTestBackend()
ludwig_model1 = LudwigModel(config, backend=backend)
_, _, output_dir = ludwig_model1.train(
training_set=training_set,
validation_set=validation_set,
test_set=test_set,
output_directory="results", # results_dir
)
preds_1, _ = ludwig_model1.predict(dataset=validation_set)
def check_model_equal(ludwig_model2):
# Compare model predictions
preds_2, _ = ludwig_model2.predict(dataset=validation_set)
assert set(preds_1.keys()) == set(preds_2.keys())
for key in preds_1:
assert preds_1[key].dtype == preds_2[key].dtype, key
assert np.all(a == b for a, b in zip(preds_1[key], preds_2[key])), key
# assert preds_2[key].dtype == preds_3[key].dtype, key
# assert list(preds_2[key]) == list(preds_3[key]), key
# Compare model weights
# this has to be done after predicts because of TF2 lazy restoration
for if_name in ludwig_model1.model.input_features:
if1 = ludwig_model1.model.input_features[if_name]
if2 = ludwig_model2.model.input_features[if_name]
for if1_w, if2_w in zip(if1.encoder_obj.parameters(), if2.encoder_obj.parameters()):
assert torch.allclose(if1_w, if2_w)
c1 = ludwig_model1.model.combiner
c2 = ludwig_model2.model.combiner
for c1_w, c2_w in zip(c1.parameters(), c2.parameters()):
assert torch.allclose(c1_w, c2_w)
for of_name in ludwig_model1.model.output_features:
of1 = ludwig_model1.model.output_features[of_name]
of2 = ludwig_model2.model.output_features[of_name]
for of1_w, of2_w in zip(of1.decoder_obj.parameters(), of2.decoder_obj.parameters()):
assert torch.allclose(of1_w, of2_w)
# Test saving and loading the model explicitly
with tempfile.TemporaryDirectory() as tmpdir:
ludwig_model1.save(tmpdir)
ludwig_model_loaded = LudwigModel.load(tmpdir, backend=backend)
check_model_equal(ludwig_model_loaded)
# Test loading the model from the experiment directory
ludwig_model_exp = LudwigModel.load(os.path.join(output_dir, "model"), backend=backend)
check_model_equal(ludwig_model_exp)
def test_torchscript_preproc_timeseries_alternative_type(
tmpdir, csv_filename, padding, fill_value):
data_csv_path = os.path.join(tmpdir, csv_filename)
feature = timeseries_feature(
preprocessing={
"padding": padding,
"timeseries_length_limit": 4,
"fill_value": "1.0",
},
max_len=7,
)
input_features = [
feature,
]
output_features = [
binary_feature(),
]
backend = LocalTestBackend()
config = {
"input_features": input_features,
"output_features": output_features,
TRAINER: {
"epochs": 2
}
}
training_data_csv_path = generate_data(input_features,
output_features,
data_csv_path,
nan_percent=0.2)
# Initialize Ludwig model
ludwig_model, script_module = initialize_torchscript_module(
tmpdir, config, backend, training_data_csv_path)
# Obtain preprocessed inputs from Python model
preproc_inputs_expected, _ = preprocess_for_prediction(
ludwig_model.config,
training_data_csv_path,
ludwig_model.training_set_metadata,
backend=backend,
include_outputs=False,
)
df = pd.read_csv(training_data_csv_path)
inputs = to_inference_module_input_from_dataframe(df,
config,
load_paths=True)
def transform_timeseries_from_str_list_to_tensor_list(timeseries_list):
timeseries = []
for timeseries_str in timeseries_list:
timeseries.append(
torch.tensor([float(x) for x in timeseries_str.split()]))
return timeseries
inputs[feature[NAME]] = transform_timeseries_from_str_list_to_tensor_list(
inputs[feature[NAME]])
preproc_inputs = script_module.preprocessor_forward(inputs)
# Check that preproc_inputs is the same as preproc_inputs_expected.
for feature_name_expected, feature_values_expected in preproc_inputs_expected.dataset.items(
):
feature_name = feature_name_expected[:feature_name_expected.rfind(
"_")] # remove proc suffix
assert feature_name in preproc_inputs.keys(
), f'feature "{feature_name}" not found.'
feature_values = preproc_inputs[feature_name]
assert utils.is_all_close(
feature_values, feature_values_expected
), f'feature "{feature_name}" value mismatch.'
def test_neuropod(csv_filename):
#######
# Setup
#######
with tempfile.TemporaryDirectory() as tmpdir:
dir_path = tmpdir
data_csv_path = os.path.join(tmpdir, csv_filename)
image_dest_folder = os.path.join(tmpdir, "generated_images")
audio_dest_folder = os.path.join(tmpdir, "generated_audio")
input_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
vector_feature(),
image_feature(image_dest_folder),
audio_feature(audio_dest_folder),
timeseries_feature(),
date_feature(),
h3_feature(),
set_feature(vocab_size=3),
bag_feature(vocab_size=3),
]
output_features = [
binary_feature(),
numerical_feature(),
category_feature(vocab_size=3),
sequence_feature(vocab_size=3),
text_feature(vocab_size=3),
set_feature(vocab_size=3),
vector_feature(),
]
# Generate test data
data_csv_path = generate_data(input_features, output_features, data_csv_path)
#############
# Train model
#############
config = {"input_features": input_features, "output_features": output_features, "training": {"epochs": 2}}
ludwig_model = LudwigModel(config, backend=LocalTestBackend())
ludwig_model.train(
dataset=data_csv_path,
skip_save_training_description=True,
skip_save_training_statistics=True,
skip_save_progress=True,
skip_save_log=True,
skip_save_processed_input=True,
output_directory=dir_path,
)
data_df = pd.read_csv(data_csv_path)
original_predictions_df, _ = ludwig_model.predict(dataset=data_df)
###################
# save Ludwig model
###################
ludwigmodel_path = os.path.join(dir_path, "ludwigmodel")
shutil.rmtree(ludwigmodel_path, ignore_errors=True)
ludwig_model.save(ludwigmodel_path)
################
# build neuropod
################
neuropod_path = os.path.join(dir_path, "neuropod")
shutil.rmtree(neuropod_path, ignore_errors=True)
export_neuropod(ludwigmodel_path, neuropod_path=neuropod_path, entrypoint="get_test_model")
########################
# predict using neuropod
########################
if_dict = {
input_feature["name"]: np.expand_dims(
np.array([str(x) for x in data_df[input_feature["name"]].tolist()], dtype="str"), 1
)
for input_feature in input_features
}
from neuropod.loader import load_neuropod
neuropod_model = load_neuropod(neuropod_path, _always_use_native=False)
preds = neuropod_model.infer(if_dict)
for key in preds:
preds[key] = np.squeeze(preds[key])
#########
# cleanup
#########
# Delete the temporary data created
for path in [ludwigmodel_path, neuropod_path, image_dest_folder, audio_dest_folder]:
if os.path.exists(path):
if os.path.isfile(path):
os.remove(path)
else:
shutil.rmtree(path, ignore_errors=True)
########
# checks
########
for output_feature in output_features:
output_feature_name = output_feature["name"]
output_feature_type = output_feature["type"]
if (
output_feature_name + "_predictions" in preds
and output_feature_name + "_predictions" in original_predictions_df
):
neuropod_pred = preds[output_feature_name + "_predictions"].tolist()
if output_feature_type == BINARY:
neuropod_pred = [str2bool(x) for x in neuropod_pred]
if output_feature_type in {SEQUENCE, TEXT, SET}:
neuropod_pred = [x.split() for x in neuropod_pred]
original_pred = original_predictions_df[output_feature_name + "_predictions"].tolist()
assert neuropod_pred == original_pred
if (
output_feature_name + "_probability" in preds
and output_feature_name + "_probability" in original_predictions_df
):
neuropod_prob = preds[output_feature_name + "_probability"].tolist()
if output_feature_type in {SEQUENCE, TEXT, SET}:
neuropod_prob = [[float(n) for n in x.split()] for x in neuropod_prob]
if any(isinstance(el, list) for el in neuropod_prob):
neuropod_prob = np.array(list(itertools.zip_longest(*neuropod_prob, fillvalue=0))).T
original_prob = original_predictions_df[output_feature_name + "_probability"].tolist()
if any(isinstance(el, list) for el in original_prob):
original_prob = np.array(list(itertools.zip_longest(*original_prob, fillvalue=0))).T
assert np.allclose(neuropod_prob, original_prob)
if (
output_feature_name + "_probabilities" in preds
and output_feature_name + "_probabilities" in original_predictions_df
):
neuropod_prob = preds[output_feature_name + "_probabilities"].tolist()
original_prob = original_predictions_df[output_feature_name + "_probabilities"].tolist()
assert np.allclose(neuropod_prob, original_prob)
