def pointnet_fp_module(xyz1, xyz2, points1, points2, mlp, is_training, bn_decay, scope, bn=True):
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0/dist),axis=2,keep_dims=True)
norm = tf.tile(norm,[1,1,3])
weight = (1.0/dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
if points1 is not None:
# gated fusion
concated_fea = tf.concat(axis=2, values=[interpolated_points, points1]) # B, ndataset1, nchannel1 + nchannel2
concated_fea = tf.nn.relu(concated_fea)
concated_fea = tf.expand_dims(concated_fea, 2)
concated_fea = tf_util.conv2d(concated_fea, 1, [1, 1],
padding='VALID', stride=[1, 1],
bn=bn, is_training=is_training,
scope='concat_conv', bn_decay=bn_decay)
concated_fea = tf.squeeze(concated_fea, 2)
fusion_weights = tf.sigmoid(concated_fea)
interp_fusion_weights = tf.ones_like(fusion_weights) - fusion_weights
new_points1 = tf.concat(axis=2, values=[tf.multiply(interpolated_points, interp_fusion_weights), tf.multiply(points1, fusion_weights)])
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):
new_points1 = tf_util.conv2d(new_points1, num_out_channel, [1,1],
padding='VALID', stride=[1,1],
bn=bn, is_training=is_training,
scope='conv_%d'%(i), bn_decay=bn_decay)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def three_nearest_interpolation(xyz_query,
xyz_support,
features_support,
k_interpolation=3):
"""need custom CUDA ops to support (three_nn(), three_interpolate())
----------
xyz_query : Tensor
(B, N, 3) tensor of the xyz positions of the unknown points
xyz_support : Tensor
(B, M, 3) tensor of the xyz positions of the known points (i.e. B PC examples, each is mx3 shape)
features_support : Tensor
(B, M, C) tensor of features to be propagated (i.e. B PC examples, each is mx3 shape)
k_interpolation:
the number of neighbors used for interpolation
Returns
-------
new_features : torch.Tensor
(B,N,C) tensor of the features of the weakly points' features(i.e., n weakly points' new features)
"""
if xyz_support is not None:
dist, idx = three_nn(xyz_query, xyz_support) # (B,N,3), (B,N,3)
dist_recip = 1.0 / (dist + 1e-8) # (B,N,3)
norm = tf.reduce_sum(dist_recip, axis=2, keepdims=True) # (B,N,1)
weight = dist_recip / norm # (B,N,3)
interpolated_feats = three_interpolate(features_support, idx,
weight) # (B,N,C)
else:
raise ValueError('make sure the known parameters are valid')
return interpolated_feats # (B,N,C)
def deconv(pts, fts, qrs, qrs_fts, C, tag, is_training):
"""
pts: points of previous layer, e.g.,(B, N/2, 3)
fts: point features of previous layer, e.g.,(B, N/2, C)
qrs: selected representative points of this layer, e.g.,(B, N, 3)
qrs_fts: e.g., (B, N, C)
"""
dist, idx = three_nn(qrs, pts)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_fts = three_interpolate(fts, idx, weight) # (B, N, C)
if qrs_fts is not None:
interpolated_fts = tf.concat([interpolated_fts, qrs_fts], axis=2)
interpolated_fts = tf.expand_dims(interpolated_fts, 2)
new_features = pf.conv2d(interpolated_fts,
C,
tag,
is_training=is_training,
kernel_size=[1, 1])
new_features = tf.squeeze(new_features, [2])
return new_features
def texture_geodesic_tconv(xyz1,
xyz2,
points1,
points2,
mlp,
is_training,
bn_decay,
scope,
bn=True):
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
if points1 is not None:
new_points1 = tf.concat(
axis=2, values=[interpolated_points,
points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):
new_points1 = tf_util.conv2d(new_points1,
num_out_channel, [1, 1],
padding='VALID',
stride=[1, 1],
bn=bn,
is_training=is_training,
scope='conv_%d' % (i),
bn_decay=bn_decay)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def pointnet_fp_module(xyz1, xyz2, points1, points2, mlp, is_training, bn_decay, scope, bn=True):
''' PointNet Feature Propogation (FP) Module
Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0/dist),axis=2,keep_dims=True)
norm = tf.tile(norm,[1,1,3])
weight = (1.0/dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
if points1 is not None:
new_points1 = tf.concat(axis=2, values=[interpolated_points, points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):
new_points1 = tf_util.conv2d(new_points1, num_out_channel, [1,1],
padding='VALID', stride=[1,1],
bn=bn, is_training=is_training,
scope='conv_%d'%(i), bn_decay=bn_decay)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def call(self, xyz1, xyz2, points1, points2):
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
# 将第二维压缩求和
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
# 根据距离求得点的权重
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
if points1 is not None:
new_points1 = tf.concat(
axis=2, values=[interpolated_points,
points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(self.mlp):
new_points1 = self.conv2d(new_points1,
num_out_channel, [1, 1],
i,
padding='VALID',
stride=[1, 1])
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def pointnet_fp_module(xyz1, xyz2, points1, points2, mlp, scope, bn=True):
''' PointNet Feature Propogation (FP) Module
Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
if points1 is not None:
new_points1 = tf.concat(axis=2, values=[interpolated_points, points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):
new_points1 = Conv2D("conv_%d" % i, new_points1, num_out_channel, [1, 1], padding='VALID',
activation=BNReLU if bn else tf.nn.relu)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def pointnet_fp_module(xyz1, xyz2, points1, points2, mlp, is_training, bn_decay, scope, bn=True):
''' PointNet Feature Propogation (FP) Module
Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0/dist),axis=2,keep_dims=True)
norm = tf.tile(norm,[1,1,3])
weight = (1.0/dist) / norm
interpolated_points = three_interpolate(points2, idx, weight) #point2向着point1的数目插值
if points1 is not None:
new_points1 = tf.concat(axis=2, values=[interpolated_points, points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):# 特征插值后重新计算特征
new_points1 = tf_util.conv2d(new_points1, num_out_channel, [1,1],
padding='VALID', stride=[1,1],
bn=bn, is_training=is_training,
scope='conv_%d'%(i), bn_decay=bn_decay)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def interpolate_points(dense_xyz, sparse_xyz, sparse_point):
dist, idx = three_nn(dense_xyz, sparse_xyz)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(sparse_point, idx, weight)
return interpolated_points
def PointASNLDecodingLayer(xyz1, xyz2, points1, points2, nsample, mlp, is_training, bn_decay, weight_decay, scope, bn=True, use_xyz = True,use_knn=True, radius=None, dilate_rate=1, mode='concat', NL=False):
''' Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
K: int32 -- how many points in each local region
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
with tf.variable_scope(scope) as sc:
batch_size, num_points, num_channel = points2.get_shape()
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0/dist),axis=2,keepdims=True)
norm = tf.tile(norm,[1,1,3])
weight = (1.0/dist) / norm
'''Point NonLocal Cell'''
if NL:
new_nonlocal_point = PointNonLocalCell(points1, tf.expand_dims(points2, axis=1), [max(32,num_channel),num_channel],
is_training, bn_decay, weight_decay, scope, bn, mode=mode)
new_nonlocal_point = tf.squeeze(new_nonlocal_point, [1]) # (batch_size, npoints, mlp2[-1])
points2 = tf.add(points2, new_nonlocal_point)
interpolated_points = three_interpolate(points2, idx, weight)
'''Point Local Cell'''
grouped_xyz, grouped_feature, idx = grouping(interpolated_points, nsample, xyz1, xyz1, use_xyz=use_xyz,use_knn=use_knn, radius=radius)
grouped_xyz -= tf.tile(tf.expand_dims(xyz1, 2), [1, 1, nsample, 1]) # translation normalization
weight = weight_net_hidden(grouped_xyz, [32], scope = 'decode_weight_net', is_training=is_training, bn_decay = bn_decay, weight_decay = weight_decay)
new_points = grouped_feature
new_points = tf.transpose(new_points, [0, 1, 3, 2])
new_points = tf.matmul(new_points, weight)
new_points = tf_util.conv2d(new_points, mlp[0], [1,new_points.get_shape()[2].value],
padding='VALID', stride=[1,1],
bn=bn, is_training=is_training,
scope='decode_after_conv', bn_decay=bn_decay, weight_decay = weight_decay)
if points1 is not None:
new_points1 = tf.concat(axis=-1, values=[new_points, tf.expand_dims(points1, axis = 2)]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = new_points
for i, num_out_channel in enumerate(mlp):
if i != 0:
new_points1 = tf_util.conv2d(new_points1, num_out_channel, [1,1],
padding='VALID', stride=[1,1],
bn=bn, is_training=is_training,
scope='conv_%d'%(i), bn_decay=bn_decay, weight_decay = weight_decay)
new_points = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points
def three_nn_upsampling(target_points, source_points):
dist, idx = three_nn(target_points, source_points)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keepdims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
return idx, weight
def point_upsmaple(xyz1, xyz2, points2, scope):
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0/dist),axis=2,keep_dims=True)
norm = tf.tile(norm,[1,1,3])
weight = (1.0/dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
return interpolated_points
def test_grad(self):
with self.test_session():
points = tf.constant(np.random.random((1,8,16)).astype('float32'))
xyz1 = tf.constant(np.random.random((1,128,3)).astype('float32'))
xyz2 = tf.constant(np.random.random((1,8,3)).astype('float32'))
dist, idx = three_nn(xyz1, xyz2)
weight = tf.ones_like(dist)/3.0
interpolated_points = three_interpolate(points, idx, weight)
err = tf.test.compute_gradient_error(points, (1,8,16), interpolated_points, (1,128,16))
self.assertLess(err, 1e-4)
def three_nearest_interpolation(xyz_query,
xyz_support,
features_support,
batch_inds,
k_interpolation=3):
"""need custom CUDA ops to support (three_nn(), three_interpolate())
----------
weakly_points : torch.Tensor
(n, 3) tensor of the xyz positions of the unknown points
xyz_support : torch.Tensor
(B, m, 3) tensor of the xyz positions of the known points (i.e. B PC examples, each is mx3 shape)
features_support : torch.Tensor
(B, m, C) tensor of features to be propagated (i.e. B PC examples, each is mx3 shape)
batch_inds: torch.Tensor
(n,) tensor of the batch indices to denote which batch for the weakly_points, values are 0 to B-1
k_interpolation:
the number of neighbors used for interpolation
Returns
-------
new_features : torch.Tensor
(n, C2, 1) tensor of the features of the weakly points' features(i.e., n weakly points' new features)
"""
# HACK: query features for each weak pt，here treat unknow（n,3) tensor as n sets(i.e., n batches where each batch has 1 pt) such that the MaskedUpSampled code can be used.
xyz_query = tf.reshape(xyz_query,
(tf.shape(xyz_query)[0], 1, -1)) # (n,1,3)
# points_current = points_current[batch_inds,...] # BUG: CUDA error: an illegal memory access was encountered when use a tensor
xyz_support = tf.gather(
xyz_support, batch_inds, axis=0
) # (B,m,3) --> (n,m,3) as each weak point might come from different batch
# features_current = features_current[batch_inds,...]
features_support = tf.gather(
features_support, batch_inds,
axis=0) # (B,m,C) --> (n,m,C), e.g., (n, 10240,32)
if xyz_support is not None:
# query nearest 3 neighbors for each weak point
dist, idx = three_nn(xyz_query, xyz_support) # (n,1,3), (n,1,3)
dist_recip = 1.0 / (dist + 1e-8) # (n,1,3)
norm = tf.reduce_sum(dist_recip, axis=2, keepdims=True) # (n,1,1)
weight = dist_recip / norm # (n,1,3)
interpolated_feats = three_interpolate(features_support, idx,
weight) # (n,1,C)
else:
raise ValueError('make sure the known parameters are valid')
return interpolated_feats # (n,1,C)
def fun(xyz1, xyz2, pts2):
with tf.device("/cpu:0"):
points = tf.constant(np.expand_dims(pts2, 0))
xyz1 = tf.constant(np.expand_dims(xyz1, 0))
xyz2 = tf.constant(np.expand_dims(xyz2, 0))
dist, idx = three_nn(xyz1, xyz2)
# weight = tf.ones_like(dist)/3.0
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
print(norm)
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points, idx, weight)
with tf.Session("") as sess:
tmp, pts1, d, w = sess.run([xyz1, interpolated_points, dist, weight])
pts1 = pts1.squeeze()
return pts1
def three_nn_upsampling(target_points, source_points):
'''
Input:
target_points: (batch_size, num_tpoints, 3)
source_points: (batch_size, num_spoints, 3)
Returns:
idx: (batch_size, num_tpoints, 3)
weight: (batch_size, num_tpoints, 3)
'''
dist, idx = three_nn(target_points, source_points)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keepdims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
return idx, weight
def test(self):
np.random.seed(100)
pts = np.random.random((32, 128, 64)).astype("float32")
tmp1 = np.random.random((32, 512, 3)).astype("float32")
tmp2 = np.random.random((32, 128, 3)).astype("float32")
with tf.device("/cpu:0"):
points = tf.constant(pts)
xyz1 = tf.constant(tmp1)
xyz2 = tf.constant(tmp2)
dist, idx = three_nn(xyz1, xyz2)
weight = tf.ones_like(dist) / 3.0
interpolated_points = three_interpolate(points, idx, weight)
with tf.compat.v1.Session("") as sess:
now = time.time()
for _ in range(100):
ret = sess.run(interpolated_points)
print(time.time() - now)
print(ret.shape, ret.dtype)
def test_grad(self):
with self.test_session():
features = tf.constant(
np.random.random(
(1, 8, 16)).astype('float32')) # features, (1,8,16)
print(features)
xyz1 = tf.constant(np.random.random((1, 128, 3)).astype('float32'))
xyz2 = tf.constant(np.random.random((1, 8, 3)).astype('float32'))
dist, idx = three_nn(xyz1, xyz2) # (1,128,3), (1,128,3)
weight = tf.ones_like(dist) / 3.0 # (1,128,3)
interpolated_features = three_interpolate(features, idx,
weight) # (1,128,16)
print(interpolated_features)
err = tf.test.compute_gradient_error(features, (1, 8, 16),
interpolated_features,
(1, 128, 16))
print(err)
self.assertLess(err, 1e-4)
def fun(xyz1,xyz2,pts2):
with tf.device('/cpu:0'):
points = tf.constant(np.expand_dims(pts2,0))
xyz1 = tf.constant(np.expand_dims(xyz1,0))
xyz2 = tf.constant(np.expand_dims(xyz2,0))
dist, idx = three_nn(xyz1, xyz2)
#weight = tf.ones_like(dist)/3.0
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0/dist),axis=2,keep_dims=True)
norm = tf.tile(norm, [1,1,3])
print(norm)
weight = (1.0/dist) / norm
interpolated_points = three_interpolate(points, idx, weight)
with tf.Session('') as sess:
tmp,pts1,d,w = sess.run([xyz1, interpolated_points, dist, weight])
#print w
pts1 = pts1.squeeze()
return pts1
def pointnet_upsample(xyz1, xyz2, points2, scope):
""" PointNet Feature Propogation (FP) Module
Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points2: (batch_size, ndataset2, nchannel2) TF tensor
Return:
new_points: (batch_size, ndataset1, nchannel2) TF tensor
"""
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(
points2, idx, weight) # B x ndataset1 x nchannel2
return interpolated_points
def pointnet_fp_module(xyz1,
xyz2,
points1,
points2,
mlp,
last_mlp_activation=True,
scope='fp'):
''' PointNet Feature Propogation (FP) Module
Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keepdims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
if points1 is not None:
new_points1 = tf.concat(
axis=2, values=[interpolated_points,
points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):
if i == len(mlp) - 1 and not (last_mlp_activation):
activation_fn = None
else:
activation_fn = tf.nn.relu
new_points1 = conv2d(inputs=new_points1,
filters=num_out_channel,
name='mlp_%d' % (i + 1))
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def pc_upsampling(xyz_upsample, xyz, feat, scope='upsampling'):
""" Fully connected layer with non-linear operation.
Args:
xyz_upsample: 3-D tensor B x N2 x 3
xyz: 3-D tensor B x N x 3
feat: 3-D tensor B x N x C
Returns:
feat_upsample: 3-D tensor B x N2 x C
"""
with tf.variable_scope(scope) as sc:
dist, idx_de = three_nn(xyz_upsample, xyz)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
feat_upsample = three_interpolate(feat, idx_de, weight)
return feat_upsample
def get_model(point_cloud, cls_label, is_training, bn_decay=None):
""" Classification PointNet, input is BxNx3, output Bx40 """
batch_size = point_cloud.get_shape()[0].value
num_point = point_cloud.get_shape()[1].value
end_points = {}
l0_xyz = tf.slice(point_cloud, [0,0,0], [-1,-1,3])
l0_points = tf.slice(point_cloud, [0,0,3], [-1,-1,3])
# Set abstraction layers
l1_xyz, l1_points = pointnet_sa_module_msg(l0_xyz, l0_points, 512, [0.1,0.2,0.4], [32,64,128], [[32,32,64], [64,64,128], [64,96,128]], is_training, bn_decay, scope='layer1')
l2_xyz, l2_points = pointnet_sa_module_msg(l1_xyz, l1_points, 128, [0.4,0.8], [64,128], [[128,128,256],[128,196,256]], is_training, bn_decay, scope='layer2')
l3_xyz, l3_points, l3_indices = pointnet_sa_module(l2_xyz, l2_points, npoint=None, radius=None, nsample=None, mlp=[256,512,1024], mlp2=None, group_all=True, is_training=is_training, bn_decay=bn_decay, scope='layer3')
# Feature propagation layers
l2_points = pointnet_fp_module(l2_xyz, l3_xyz, l2_points, l3_points, [256,256], is_training, bn_decay, scope='fa_layer1')
l1_points = pointnet_fp_module(l1_xyz, l2_xyz, l1_points, l2_points, [256,128], is_training, bn_decay, scope='fa_layer2')
cls_label_one_hot = tf.one_hot(cls_label, depth=NUM_CATEGORIES, on_value=1.0, off_value=0.0)
cls_label_one_hot = tf.reshape(cls_label_one_hot, [batch_size, 1, NUM_CATEGORIES])
cls_label_one_hot = tf.tile(cls_label_one_hot, [1,num_point,1])
# Calculate the relative coordinates generated in the first set abstraction layer
# These relative coordinates will be concatenated in the last feature propagation layer
dist, idx = three_nn(l0_xyz, l1_xyz)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0/dist),axis=2,keep_dims=True)
norm = tf.tile(norm,[1,1,3])
weight = (1.0/dist) / norm
l0_virtual_centers = three_interpolate(l1_xyz, idx, weight)
l0_xyz_rel = l0_xyz - l0_virtual_centers
#l0_points = pointnet_fp_module(l0_xyz, l1_xyz, tf.concat([cls_label_one_hot, l0_xyz_rel, l0_points],axis=-1), l1_points, [128,128], is_training, bn_decay, scope='fp_layer3')
l0_points = pointnet_fp_module(l0_xyz, l1_xyz, tf.concat([cls_label_one_hot, l0_points],axis=-1), l1_points, [128,128], is_training, bn_decay, scope='fp_layer3')
# FC layers
net = tf_util.conv1d(l0_points, 128, 1, padding='VALID', bn=True, is_training=is_training, scope='fc1', bn_decay=bn_decay)
end_points['feats'] = net
net = tf_util.dropout(net, keep_prob=0.5, is_training=is_training, scope='dp1')
net = tf_util.conv1d(net, 50, 1, padding='VALID', activation_fn=None, scope='fc2')
return net, end_points
def call(self, x):
'''
Input:
1: unknown
2: known
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
mlp: list of int32 -- output size for MLP on each point
'''
xyz1, xyz2, points1, points2 = x
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum(1.0/dist, axis=2, keep_dims=True)
norm = tf.tile(norm, [1,1,3])
weight = (1.0/dist)/norm
interpolated_points = three_interpolate(points2, idx, weight)
# suppose points1 is not None
new_points1 = tf.concat(axis=2, values=[interpolated_points, points1]) # B, n1, c1+c2
new_points1 = tf.expand_dims(new_points1, 2) # B, n1, 1, c1+c2
return new_points1
def fun(xyz1, xyz2, pts2):
with tf.device('/cpu:0'):
points = tf.constant(np.expand_dims(pts2, 0))
xyz1 = tf.constant(np.expand_dims(xyz1, 0))
xyz2 = tf.constant(np.expand_dims(xyz2, 0))
# xyz1每个点最近的三个点的距离，索引
dist, idx = three_nn(xyz1, xyz2)
# weight = tf.ones_like(dist)/3.0
# print(weight)
# 保证距离为正
dist = tf.maximum(dist, 1e-10)
# 到最近三个点距离和
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
# 到每个点的权重
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points, idx, weight)
with tf.Session('') as sess:
tmp, pts1, d, w = sess.run([xyz1, interpolated_points, dist, weight])
#print w
pts1 = pts1.squeeze()
return pts1
def pointnet_fp_module(xyz1, xyz2, points1, points2, mlp, is_training,
bn_decay, scope):
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
if points1 is not None:
new_points1 = tf.concat(
axis=2, values=[interpolated_points,
points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = interpolated_points
new_points1 = tf.expand_dims(new_points1, 2)
kernel = [None] * len(mlp)
bias = [None] * len(mlp)
for i, num_out_channel in enumerate(mlp):
kernel[i] = tf.get_variable(
'kernel' + str(i),
[1, 1,
new_points1.get_shape()[-1].value, num_out_channel],
initializer=tf.contrib.layers.xavier_initializer(),
dtype=tf.float32)
bias[i] = tf.get_variable('bias' + str(i), [num_out_channel],
initializer=tf.constant_initializer(0.0),
dtype=tf.float32)
new_points1 = tf.nn.conv2d(new_points1,
kernel[i], [1, 1, 1, 1],
padding='VALID')
new_points1 = tf.nn.bias_add(new_points1, bias[i])
new_points1 = tf.nn.relu(new_points1)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]s
return new_points1
def pointconv_decoding_depthwise(xyz1,
xyz2,
points1,
points2,
radius,
sigma,
K,
mlp,
is_training,
bn_decay,
weight_decay,
scope,
bn=True,
use_xyz=True,
is_dist=False):
""" Input:
depthwise version of pointconv
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
sigma: float32 -- KDE bandwidth
K: int32 -- how many points in each local region
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
"""
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
# setup for deConv
grouped_xyz, grouped_feature, idx = pointconv_grouping(
interpolated_points, K, xyz1, xyz1, use_xyz=use_xyz)
weight = weight_net(grouped_xyz,
[32, grouped_feature.get_shape()[3].value],
scope='decode_weight_net',
is_training=is_training,
bn_decay=bn_decay,
weight_decay=weight_decay,
is_dist=is_dist)
new_points = tf.multiply(grouped_feature, weight)
new_points = tf_util.reduce_sum2d_conv(new_points,
axis=2,
scope='fp_sumpool',
bn=True,
is_dist=is_dist,
bn_decay=bn_decay,
is_training=is_training,
keepdims=False)
if points1 is not None:
# [B x ndataset1 x nchannel1+nchannel2]
new_points1 = tf.concat(axis=-1, values=[new_points, points1])
else:
new_points1 = new_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):
new_points1 = tf_util.conv2d(new_points1,
num_out_channel, [1, 1],
padding='VALID',
stride=[1, 1],
bn=bn,
is_training=is_training,
is_dist=is_dist,
scope='conv_%d' % (i),
bn_decay=bn_decay,
weight_decay=weight_decay)
new_points1 = tf.squeeze(new_points1, [2]) # [B x ndataset1 x mlp[-1]]
return new_points1
import numpy as np
import tensorflow as tf
import time
from tf_interpolate import three_nn, three_interpolate
if __name__ == "__main__":
np.random.seed(100)
target_points = np.random.random((64, 8192, 3)).astype("float32")
reference_points = np.random.random((64, 1024, 3)).astype("float32")
with tf.device("/cpu:0"):
xyz1 = tf.constant(target_points)
xyz2 = tf.constant(reference_points)
dist, idx = three_nn(xyz1, xyz2)
with tf.Session("") as sess:
# Warm up
dist, idx = sess.run(three_nn(xyz1, xyz2))
# Run
s = time.time()
dist, idx = sess.run(three_nn(xyz1, xyz2))
print("Time: {}".format(time.time() - s))
print(idx.shape, idx.dtype)
print(dist.shape, dist.dtype)
print(dist[:3, :3, :1].flatten())
print(idx[:3, :3, :1].flatten())
# Expected output
# (64, 8192, 3) int32
def triplenet_fp_module(xyz1,
xyz2,
points1,
points2,
mlp1,
mlp2,
is_training,
bn_decay,
scope,
bn=True):
''' PointNet Feature Propogation (FP) Module
Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
batch_size = xyz1.get_shape()[0].value
ndataset1 = xyz1.get_shape()[1].value
with tf.variable_scope(scope) as sc:
# retrieve three nearest neighbors
_, knn_idx = three_nn(xyz1, xyz2) #shape=(B,ndataset1,3)
B_idx = np.arange(batch_size)
B_idx = np.reshape(B_idx, (batch_size, 1))
B_idx = np.tile(B_idx, 3 * ndataset1)
B_idx = np.reshape(B_idx, (batch_size, ndataset1, 3))
knn_idx = tf.stack((B_idx, knn_idx), -1)
knn_points = tf.gather_nd(points2,
knn_idx) #shape=(B,ndataset1,3,nchannel2)
# Generate all possible permutations of the 3 nearest neighbors
knn_points_tr = tf.transpose(
knn_points,
[2, 0, 1, 3]) #bringing the neighbors to the first axis
point_idxs = np.array(
[0, 1, 2, 0, 2, 1, 1, 0, 2, 1, 2, 0, 2, 0, 1, 2, 1, 0])
knn_points_tr = tf.gather(knn_points_tr, point_idxs)
knn_points = tf.transpose(knn_points_tr, [1, 2, 0, 3])
new_points1 = tf_util.conv2d(knn_points,
mlp1[0], [1, 3],
padding='VALID',
stride=[1, 3],
bn=bn,
is_training=is_training,
scope='interpol_%d' % (0),
bn_decay=bn_decay)
mlp1.pop(0)
for i, num_out_channel in enumerate(mlp1, start=1):
new_points1 = tf_util.conv2d(new_points1,
num_out_channel, [1, 1],
padding='VALID',
stride=[1, 1],
bn=bn,
is_training=is_training,
scope='interpol_%d' % (i),
bn_decay=bn_decay)
new_points1 = tf.reduce_max(new_points1, axis=[2], name='maxpool')
if points1 is not None:
new_points1 = tf.concat(
axis=2, values=[new_points1,
points1]) # B,ndataset1,nchannel1+nchannel2
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp2):
new_points1 = tf_util.conv2d(new_points1,
num_out_channel, [1, 1],
padding='VALID',
stride=[1, 1],
bn=bn,
is_training=is_training,
scope='conv_%d' % (i),
bn_decay=bn_decay)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def deconv_new(pts,
fts,
qrs,
tag,
N,
K,
radius,
P,
C,
C_pts_fts,
is_training,
with_X_transformation,
depth_multiplier,
D=1,
sorting_method=None,
with_global=False,
knn=False):
"""
pts: points of previous layer, e.g.,(B, N/2, 3)
fts: point features of previous layer, e.g.,(B, N/2, C)
qrs: selected representative points of this layer, e.g.,(B, N, 3)
N: batch_size,
K: neighbor_size,
D: dilation parameter,
P: the number of selected representative points,
C: output feature number per point,
C_pts_fts: feature number for each local point
radius: float32, the radius of query ball search
knn: True: knn; False: query ball
"""
dist, idx = three_nn(qrs, pts)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_fts = three_interpolate(fts, idx, weight) # (B, N, C)
if knn:
_, indices_dilated = pf.knn_indices_general(qrs, qrs, K * D, True)
indices = indices_dilated[:, :, ::D, :]
nn_pts = tf.gather_nd(qrs, indices,
name=tag + 'nn_pts') # (B, N, K, 3)
nn_fts_from_prev = tf.gather_nd(interpolated_fts,
indices,
name=tag + 'nn_fts')
else:
indices, pts_cnt = query_ball_point(radius, K, qrs, qrs)
nn_pts = group_point(qrs, indices)
nn_fts_from_prev = group_point(interpolated_fts, indices)
nn_pts_center = tf.expand_dims(qrs, axis=2,
name=tag + 'nn_pts_center') # (B, N, 1, 3)
nn_pts_local = tf.subtract(nn_pts,
nn_pts_center,
name=tag + 'nn_pts_local') # (B, N, K, 3)
# Prepare features to be transformed
nn_fts_from_pts_0 = pf.dense(nn_pts_local, C_pts_fts,
tag + 'nn_fts_from_pts_0', is_training)
nn_fts_from_pts = pf.dense(nn_fts_from_pts_0, C_pts_fts,
tag + 'nn_fts_from_pts', is_training)
nn_fts_input = tf.concat([nn_fts_from_pts, nn_fts_from_prev],
axis=-1,
name=tag + 'nn_fts_input')
if with_X_transformation:
######################## X-transformation #########################
X_0 = pf.conv2d(nn_pts_local, K * K, tag + 'X_0', is_training,
(1, K)) # following paper
X_0_KK = tf.reshape(X_0, (N, P, K, K), name=tag + 'X_0_KK')
X_1 = pf.depthwise_conv2d(X_0_KK, K, tag + 'X_1', is_training,
(1, K)) # following paper
X_1_KK = tf.reshape(X_1, (N, P, K, K), name=tag + 'X_1_KK')
X_2 = pf.depthwise_conv2d(X_1_KK,
K,
tag + 'X_2',
is_training, (1, K),
activation=None) # following paper
X_2_KK = tf.reshape(X_2, (N, P, K, K), name=tag + 'X_2_KK')
fts_X = tf.matmul(X_2_KK, nn_fts_input, name=tag + 'fts_X')
###################################################################
else:
fts_X = nn_fts_input
fts_conv = pf.separable_conv2d(fts_X,
C,
tag + 'fts_conv',
is_training, (1, K),
depth_multiplier=depth_multiplier)
fts_conv_3d = tf.squeeze(fts_conv, axis=2, name=tag + 'fts_conv_3d')
if with_global:
fts_global_0 = pf.dense(qrs, C // 4, tag + 'fts_global_0', is_training)
fts_global = pf.dense(fts_global_0, C // 4, tag + 'fts_global_',
is_training)
return tf.concat([fts_global, fts_conv_3d],
axis=-1,
name=tag + 'fts_conv_3d_with_global')
else:
return fts_conv_3d
def feature_decoding_layer(xyz1,
xyz2,
points1,
points2,
radius,
sigma,
K,
mlp,
is_training,
bn_decay,
weight_decay,
scope,
bn=True,
use_xyz=True,
boundary_label=None):
''' Input:
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
sigma: float32 -- KDE bandwidth
K: int32 -- how many points in each local region
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keepdims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
#setup for deConv
if boundary_label is None:
pass
else:
tmp_boundary_label = tf.tile(tf.expand_dims(boundary_label, [-1]),
[1, 1, interpolated_points.shape[2]])
interpolated_points = interpolated_points * tmp_boundary_label
grouped_xyz, grouped_feature, idx, grouped_boundary_label = pointconv_util.grouping(
interpolated_points,
K,
xyz1,
xyz1,
use_xyz=use_xyz,
boundary_label=boundary_label)
weight = weight_net_hidden(grouped_xyz, [32],
scope='decode_weight_net',
is_training=is_training,
bn_decay=bn_decay,
weight_decay=weight_decay)
new_points = tf.transpose(grouped_feature, [0, 1, 3, 2])
new_points = tf.matmul(new_points, weight)
new_points = tf_util.conv2d(new_points,
mlp[0],
[1, new_points.get_shape()[2].value],
padding='VALID',
stride=[1, 1],
bn=bn,
is_training=is_training,
scope='decode_after_conv',
bn_decay=bn_decay,
weight_decay=weight_decay)
if points1 is not None:
new_points1 = tf.concat(axis=-1,
values=[
new_points,
tf.expand_dims(points1, axis=2)
]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = new_points
for i, num_out_channel in enumerate(mlp):
if i != 0:
new_points1 = tf_util.conv2d(new_points1,
num_out_channel, [1, 1],
padding='VALID',
stride=[1, 1],
bn=bn,
is_training=is_training,
scope='conv_%d' % (i),
bn_decay=bn_decay,
weight_decay=weight_decay)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
def feature_decoding_layer_depthwise(xyz1,
xyz2,
points1,
points2,
radius,
sigma,
K,
mlp,
is_training,
bn_decay,
weight_decay,
scope,
bn=True,
use_xyz=True):
''' Input:
depthwise version of pointconv
xyz1: (batch_size, ndataset1, 3) TF tensor
xyz2: (batch_size, ndataset2, 3) TF tensor, sparser than xyz1
points1: (batch_size, ndataset1, nchannel1) TF tensor
points2: (batch_size, ndataset2, nchannel2) TF tensor
sigma: float32 -- KDE bandwidth
K: int32 -- how many points in each local region
mlp: list of int32 -- output size for MLP on each point
Return:
new_points: (batch_size, ndataset1, mlp[-1]) TF tensor
'''
with tf.variable_scope(scope) as sc:
dist, idx = three_nn(xyz1, xyz2)
dist = tf.maximum(dist, 1e-10)
norm = tf.reduce_sum((1.0 / dist), axis=2, keep_dims=True)
norm = tf.tile(norm, [1, 1, 3])
weight = (1.0 / dist) / norm
interpolated_points = three_interpolate(points2, idx, weight)
#setup for deConv
grouped_xyz, grouped_feature, idx = pointconv_util.grouping(
interpolated_points, K, xyz1, xyz1, use_xyz=use_xyz)
density = pointconv_util.kernel_density_estimation_ball(
xyz1, radius, sigma)
inverse_density = tf.div(1.0, density)
grouped_density = tf.gather_nd(inverse_density,
idx) # (batch_size, npoint, nsample, 1)
#grouped_density = tf_grouping.group_point(inverse_density, idx)
inverse_max_density = tf.reduce_max(grouped_density,
axis=2,
keep_dims=True)
density_scale = tf.div(grouped_density, inverse_max_density)
#density_scale = tf_grouping.group_point(density, idx)
weight = weight_net(grouped_xyz,
[32, grouped_feature.get_shape()[3].value],
scope='decode_weight_net',
is_training=is_training,
bn_decay=bn_decay,
weight_decay=weight_decay)
density_scale = nonlinear_transform(density_scale, [16, 1],
scope='decode_density_net',
is_training=is_training,
bn_decay=bn_decay,
weight_decay=weight_decay)
new_points = tf.multiply(grouped_feature, density_scale)
new_points = tf.multiply(grouped_feature, weight)
new_points = tf_util.reduce_sum2d_conv(new_points,
axis=2,
scope='fp_sumpool',
bn=True,
bn_decay=bn_decay,
is_training=is_training,
keep_dims=False)
if points1 is not None:
new_points1 = tf.concat(
axis=-1, values=[new_points,
points1]) # B,ndataset1,nchannel1+nchannel2
else:
new_points1 = new_points
new_points1 = tf.expand_dims(new_points1, 2)
for i, num_out_channel in enumerate(mlp):
new_points1 = tf_util.conv2d(new_points1,
num_out_channel, [1, 1],
padding='VALID',
stride=[1, 1],
bn=bn,
is_training=is_training,
scope='conv_%d' % (i),
bn_decay=bn_decay,
weight_decay=weight_decay)
new_points1 = tf.squeeze(new_points1, [2]) # B,ndataset1,mlp[-1]
return new_points1
