Ejemplos de get_sample_names_by_run_prefix en Python

Ejemplo n.º 1

Archivo: test_split_libraries_fastq.py Proyecto: yimsea/qiita

    def test_get_sample_names_by_run_prefix_error(self):
        fd, fp = mkstemp()
        close(fd)
        with open(fp, 'w') as f:
            f.write(MAPPING_FILE_2)
        self._clean_up_files.append(fp)

        with self.assertRaises(ValueError):
            get_sample_names_by_run_prefix(fp)

Ejemplo n.º 2

    def test_get_sample_names_by_run_prefix_error(self):
        fd, fp = mkstemp()
        close(fd)
        with open(fp, 'w') as f:
            f.write(MAPPING_FILE_2)
        self._clean_up_files.append(fp)

        with self.assertRaises(ValueError):
            get_sample_names_by_run_prefix(fp)

Ejemplo n.º 3

Archivo: test_split_libraries_fastq.py Proyecto: yimsea/qiita

    def test_get_sample_names_by_run_prefix(self):
        fd, fp = mkstemp()
        close(fd)
        with open(fp, 'w') as f:
            f.write(MAPPING_FILE)
        self._clean_up_files.append(fp)

        obs = get_sample_names_by_run_prefix(fp)
        exp = {'s3': 'SKB7.640196', 's2': 'SKD8.640184', 's1': 'SKB8.640193'}
        self.assertEqual(obs, exp)

Ejemplo n.º 4

    def test_get_sample_names_by_run_prefix(self):
        fd, fp = mkstemp()
        close(fd)
        with open(fp, 'w') as f:
            f.write(MAPPING_FILE)
        self._clean_up_files.append(fp)

        obs = get_sample_names_by_run_prefix(fp)
        exp = {'s3': 'SKB7.640196', 's2': 'SKD8.640184', 's1': 'SKB8.640193'}
        self.assertEqual(obs, exp)