def _init_column_maps(self):
"""
Initialises the CsvColumnParameters object for the
:attr:`_column_map_list`.
"""
source_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_RACK_INDEX, self.SOURCE_RACK_HEADER,
self._source_rack_values)
source_pos_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_POS_INDEX, self.SOURCE_POS_HEADER,
self._source_pos_values)
target_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.TARGET_RACK_INDEX, self.TARGET_RACK_HEADER,
self._target_rack_values)
target_pos_column = CsvColumnParameters.create_csv_parameter_map(
self.TARGET_POS_INDEX, self.TARGET_POS_HEADER,
self._target_pos_values)
volume_column = CsvColumnParameters.create_csv_parameter_map(
self.TRANSFER_VOLUME_INDEX, self.TRANSFER_VOLUME_HEADER,
self._volume_values)
self._column_map_list = [
source_rack_column, source_pos_column, target_rack_column,
target_pos_column, volume_column
]
self.add_info('Column generation complete.')
def __generate_columns(self):
# Generates the :attr:`_column_map_list`
pos_column = CsvColumnParameters(self.POSITION_INDEX,
self.POSITION_HEADER,
self.__position_values)
pool_column = CsvColumnParameters(self.POOL_INDEX, self.POOL_HEADER,
self.__pool_values)
md_column = CsvColumnParameters(self.MOLECULE_DESIGN_INDEX,
self.MOLECULE_DESIGN_HEADER,
self.__md_values)
tube_column = CsvColumnParameters(self.TUBE_INDEX, self.TUBE_HEADER,
self.__tube_values)
self._column_map_list = [
pos_column, pool_column, md_column, tube_column
]
def __generate_columns(self):
# Generates the columns for the report.
position_column = CsvColumnParameters.create_csv_parameter_map(
self.POSITION_INDEX, self.POSITION_HEADER, self.__position_values)
md_pool_column = CsvColumnParameters.create_csv_parameter_map(
self.MDP_INDEX, self.MDP_HEADER, self.__md_pool_values)
iso_conc_column = CsvColumnParameters.create_csv_parameter_map(
self.ISO_CONCENTRATION_INDEX, self.ISO_CONCENTRATION_HEADER,
self.__iso_concentration_values)
iso_volume_column = CsvColumnParameters.create_csv_parameter_map(
self.ISO_VOLUME_INDEX, self.ISO_VOLUME_HEADER,
self.__iso_volume_values)
self._column_map_list = [
position_column, md_pool_column, iso_conc_column, iso_volume_column
]
self.add_info('Column generation completed.')
def __generate_columns(self):
"""
Generates the columns for the report.
"""
position_column = CsvColumnParameters.create_csv_parameter_map(
self.POSITION_INDEX, self.POSITION_HEADER, self.__position_values)
name_column = CsvColumnParameters.create_csv_parameter_map(
self.REAGENT_NAME_INDEX, self.REAGENT_NAME_HEADER,
self.__name_values)
final_df_column = CsvColumnParameters.create_csv_parameter_map(
self.FINAL_DIL_FACTOR_INDEX, self.FINAL_DIL_FACTOR_HEADER,
self.__final_dil_factor_values)
ini_df_column = CsvColumnParameters.create_csv_parameter_map(
self.PREPAR_DIL_FACTOR_INDEX, self.PREPAR_DIL_FACTOR_HEADER,
self.__ini_dil_factor_values)
total_vol_column = CsvColumnParameters.create_csv_parameter_map(
self.TOTAL_VOLUME_INDEX, self.TOTAL_VOLUME_HEADER,
self.__total_volume_values)
reagent_vol_column = CsvColumnParameters.create_csv_parameter_map(
self.REAGENT_VOL_INDEX, self.REAGENT_VOL_HEADER,
self.__reagent_volume_values)
diluent_vol_column = CsvColumnParameters.create_csv_parameter_map(
self.DILUENT_VOL_INDEX, self.DILUENT_VOL_HEADER,
self.__diluent_volume_values)
self._column_map_list = [
position_column, name_column, final_df_column, ini_df_column,
total_vol_column, reagent_vol_column, diluent_vol_column
]
def __generate_columns(self):
"""
Generates the columns for the report.
"""
position_column = CsvColumnParameters.create_csv_parameter_map(
self.POSITION_INDEX, self.POSITION_HEADER,
self.__position_values)
name_column = CsvColumnParameters.create_csv_parameter_map(
self.REAGENT_NAME_INDEX, self.REAGENT_NAME_HEADER,
self.__name_values)
final_df_column = CsvColumnParameters.create_csv_parameter_map(
self.FINAL_DIL_FACTOR_INDEX,
self.FINAL_DIL_FACTOR_HEADER,
self.__final_dil_factor_values)
ini_df_column = CsvColumnParameters.create_csv_parameter_map(
self.PREPAR_DIL_FACTOR_INDEX,
self.PREPAR_DIL_FACTOR_HEADER,
self.__ini_dil_factor_values)
total_vol_column = CsvColumnParameters.create_csv_parameter_map(
self.TOTAL_VOLUME_INDEX, self.TOTAL_VOLUME_HEADER,
self.__total_volume_values)
reagent_vol_column = CsvColumnParameters.create_csv_parameter_map(
self.REAGENT_VOL_INDEX, self.REAGENT_VOL_HEADER,
self.__reagent_volume_values)
diluent_vol_column = CsvColumnParameters.create_csv_parameter_map(
self.DILUENT_VOL_INDEX, self.DILUENT_VOL_HEADER,
self.__diluent_volume_values)
self._column_map_list = [position_column, name_column, final_df_column,
ini_df_column, total_vol_column,
reagent_vol_column, diluent_vol_column]
def __generate_columns(self):
# Generates the columns for the report.
position_column = CsvColumnParameters.create_csv_parameter_map(
self.POSITION_INDEX, self.POSITION_HEADER,
self.__position_values)
md_pool_column = CsvColumnParameters.create_csv_parameter_map(
self.MDP_INDEX, self.MDP_HEADER,
self.__md_pool_values)
iso_conc_column = CsvColumnParameters.create_csv_parameter_map(
self.ISO_CONCENTRATION_INDEX,
self.ISO_CONCENTRATION_HEADER,
self.__iso_concentration_values)
iso_volume_column = CsvColumnParameters.create_csv_parameter_map(
self.ISO_VOLUME_INDEX, self.ISO_VOLUME_HEADER,
self.__iso_volume_values)
self._column_map_list = [position_column, md_pool_column,
iso_conc_column, iso_volume_column]
self.add_info('Column generation completed.')
def _init_column_maps(self):
"""
Initialises the CsvColumnParameters object for the
:attr:`_column_map_list`.
"""
BiomekWorklistWriter._init_column_maps(self)
diluent_info_column = \
CsvColumnParameters.create_csv_parameter_map(
self.DILUENT_INFO_INDEX, self.DILUENT_INFO_HEADER,
self._diluent_info_values)
self._column_map_list.append(diluent_info_column)
def _init_column_maps(self):
"""
Initialises the CsvColumnParameters object for the
:attr:`_column_map_list`.
"""
BiomekWorklistWriter._init_column_maps(self)
diluent_info_column = \
CsvColumnParameters.create_csv_parameter_map(
self.DILUENT_INFO_INDEX, self.DILUENT_INFO_HEADER,
self._diluent_info_values)
self._column_map_list.append(diluent_info_column)
def __generate_columns(self):
# Generates the columns for the report.
self.add_debug('Generate columns ...')
source_well_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_WELL_INDEX, self.SOURCE_WELL_HEADER,
self.__source_well_values)
design_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.DESIGN_RACK_INDEX, self.DESIGN_RACK_HEADER,
self.__design_rack_values)
target_well_column = CsvColumnParameters.create_csv_parameter_map(
self.TARGET_WELL_INDEX, self.TARGET_WELL_HEADER,
self.__target_well_values)
iso_volume_column = CsvColumnParameters.create_csv_parameter_map(
self.ISO_VOLUME_INDEX, self.ISO_VOLUME_HEADER,
self.__iso_volume_values)
iso_concentration_column = CsvColumnParameters.create_csv_parameter_map(
self.ISO_CONCENTRATION_INDEX, self.ISO_CONCENTRATION_HEADER,
self.__iso_concentration_values)
final_conc_column = CsvColumnParameters.create_csv_parameter_map(
self.FINAL_CONCENTRATION_INDEX,
self.FINAL_CONCENTRATION_HEADER,
self.__final_concentration_values)
self._column_map_list = [source_well_column, design_rack_column,
target_well_column, iso_volume_column,
iso_concentration_column,
final_conc_column]
self.add_info('Column generation completed.')
def __generate_column_maps(self):
# Initializes the CsvColumnParameters object for the
# :attr:`_column_map_list`.
pool_column = CsvColumnParameters(self.LIBRARY_POOL_INDEX,
self.LIBRARY_POOL_HEADER,
self.__lib_pool_values)
md_column = CsvColumnParameters(self.MOLECULE_DESIGN_INDEX,
self.MOLECULE_DESIGN_HEADER,
self.__md_values)
tube_column = CsvColumnParameters(self.TUBE_BARCODE_INDEX,
self.TUBE_BARCODE_HEADER,
self.__tube_barcode_values)
volume_column = CsvColumnParameters(self.VOLUME_INDEX,
self.VOLUME_HEADER,
self.__volume_values)
rack_barcode_column = \
CsvColumnParameters(self.TARGET_RACK_BARCODE_INDEX,
self.TARGET_RACK_BARCODE_HEADER,
self.__trg_rack_barcode_values)
rack_position_column = \
CsvColumnParameters(self.TARGET_POSITION_INDEX,
self.TARGET_POSITION_HEADER,
self.__trg_position_values)
self._column_map_list = [
pool_column, md_column, tube_column, volume_column,
rack_barcode_column, rack_position_column
]
def __generate_columns(self):
# Generates the columns for the report.
self.add_debug('Generate columns ...')
source_well_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_WELL_INDEX, self.SOURCE_WELL_HEADER,
self.__source_well_values)
design_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.DESIGN_RACK_INDEX, self.DESIGN_RACK_HEADER,
self.__design_rack_values)
target_well_column = CsvColumnParameters.create_csv_parameter_map(
self.TARGET_WELL_INDEX, self.TARGET_WELL_HEADER,
self.__target_well_values)
iso_volume_column = CsvColumnParameters.create_csv_parameter_map(
self.ISO_VOLUME_INDEX, self.ISO_VOLUME_HEADER,
self.__iso_volume_values)
iso_concentration_column = CsvColumnParameters.create_csv_parameter_map(
self.ISO_CONCENTRATION_INDEX, self.ISO_CONCENTRATION_HEADER,
self.__iso_concentration_values)
final_conc_column = CsvColumnParameters.create_csv_parameter_map(
self.FINAL_CONCENTRATION_INDEX, self.FINAL_CONCENTRATION_HEADER,
self.__final_concentration_values)
self._column_map_list = [
source_well_column, design_rack_column, target_well_column,
iso_volume_column, iso_concentration_column, final_conc_column
]
self.add_info('Column generation completed.')
def __generate_columns(self):
"""
Generates the columns for the report.
"""
self.add_debug('Generate columns ...')
src_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_RACK_INDEX, self.SOURCE_RACK_HEADER,
self._source_rack_values)
src_pos_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_POSITION_INDEX, self.SOURCE_POSITION_HEADER,
self._source_position_values)
tube_barcode_column = CsvColumnParameters.create_csv_parameter_map(
self.TUBE_BARCODE_INDEX, self.TUBE_BARCODE_HEADER,
self._tube_barcode_values)
dest_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.DEST_RACK_INDEX, self.DEST_RACK_HEADER,
self._dest_rack_values)
dest_pos_column = CsvColumnParameters.create_csv_parameter_map(
self.DEST_POSITION_INDEX, self.DEST_POSITION_HEADER,
self._dest_position_values)
self._column_map_list = [src_rack_column, src_pos_column,
tube_barcode_column, dest_rack_column,
dest_pos_column]
def __generate_columns(self):
"""
Generates the columns for the report.
"""
self.add_debug('Generate columns ...')
src_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_RACK_INDEX, self.SOURCE_RACK_HEADER,
self._source_rack_values)
src_pos_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_POSITION_INDEX, self.SOURCE_POSITION_HEADER,
self._source_position_values)
tube_barcode_column = CsvColumnParameters.create_csv_parameter_map(
self.TUBE_BARCODE_INDEX, self.TUBE_BARCODE_HEADER,
self._tube_barcode_values)
dest_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.DEST_RACK_INDEX, self.DEST_RACK_HEADER,
self._dest_rack_values)
dest_pos_column = CsvColumnParameters.create_csv_parameter_map(
self.DEST_POSITION_INDEX, self.DEST_POSITION_HEADER,
self._dest_position_values)
self._column_map_list = [
src_rack_column, src_pos_column, tube_barcode_column,
dest_rack_column, dest_pos_column
]
def _init_column_maps(self):
"""
Initialises the CsvColumnParameters object for the
:attr:`_column_map_list`.
"""
source_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_RACK_INDEX, self.SOURCE_RACK_HEADER,
self._source_rack_values)
source_pos_column = CsvColumnParameters.create_csv_parameter_map(
self.SOURCE_POS_INDEX, self.SOURCE_POS_HEADER,
self._source_pos_values)
target_rack_column = CsvColumnParameters.create_csv_parameter_map(
self.TARGET_RACK_INDEX, self.TARGET_RACK_HEADER,
self._target_rack_values)
target_pos_column = CsvColumnParameters.create_csv_parameter_map(
self.TARGET_POS_INDEX, self.TARGET_POS_HEADER,
self._target_pos_values)
volume_column = CsvColumnParameters.create_csv_parameter_map(
self.TRANSFER_VOLUME_INDEX, self.TRANSFER_VOLUME_HEADER,
self._volume_values)
self._column_map_list = [source_rack_column, source_pos_column,
target_rack_column, target_pos_column,
volume_column]
self.add_info('Column generation complete.')
