def test_set_int_field(self, initial_fields, value):
list_value, num_values = _wrapped_value_and_num(value)
field_map = _set_protomap_from_dict(initial_fields)
struct_utils.set_int_field(field_map, 'field', value)
self.assertIn('field', field_map)
self.assertLen(field_map['field'].values, num_values)
self.assertEqual([v.int_value for v in field_map['field'].values],
list_value)
def test_get_int_field(self, value, is_single_field, expected):
key = 'field'
field_map = _set_protomap_from_dict({})
struct_utils.set_int_field(field_map, key, value)
actual = struct_utils.get_int_field(field_map, key, is_single_field)
self.assertEqual(actual, expected)
# Test long handling in Python 2
if sys.version_info.major < 3:
field_map = _set_protomap_from_dict({})
struct_utils.set_int_field(field_map, key,
[long(v) for v in value])
actual = struct_utils.get_int_field(field_map, key,
is_single_field)
self.assertEqual(actual, expected)
def set_min_dp(variant_call, min_dp):
"""Sets the 'MIN_DP' field of the VariantCall."""
struct_utils.set_int_field(variant_call.info, 'MIN_DP', min_dp)
def set_min_dp(variant_call, min_dp): """Sets the 'MIN_DP' field of the VariantCall.""" struct_utils.set_int_field(variant_call.info, 'MIN_DP', min_dp)
def test_get_int_field(self, value, is_single_field, expected):
key = 'field'
field_map = _set_protomap_from_dict({})
struct_utils.set_int_field(field_map, key, value)
actual = struct_utils.get_int_field(field_map, key, is_single_field)
self.assertEqual(actual, expected)