Ejemplos de is_transition en Python

Ejemplo n.º 1

def _tstv(variant, vtype):
  """Returns a pair of bools indicating Transition, Transversion status."""
  if vtype == BIALLELIC_SNP:
    is_transition = variant_utils.is_transition(variant.reference_bases,
                                                variant.alternate_bases[0])
    is_transversion = not is_transition
  else:
    is_transition = is_transversion = False

  return is_transition, is_transversion

Ejemplo n.º 2

 def test_is_transition_raises_with_bad_args(self):
   with self.assertRaises(ValueError):
     variant_utils.is_transition('A', 'A')
   with self.assertRaises(ValueError):
     variant_utils.is_transition('A', 'AA')
   with self.assertRaises(ValueError):
     variant_utils.is_transition('AA', 'A')

Ejemplo n.º 3

Archivo: variant_utils_test.py Proyecto: kong75/deepvariant

 def test_is_transition_raises_with_bad_args(self):
   with self.assertRaises(ValueError):
     variant_utils.is_transition('A', 'A')
   with self.assertRaises(ValueError):
     variant_utils.is_transition('A', 'AA')
   with self.assertRaises(ValueError):
     variant_utils.is_transition('AA', 'A')

Ejemplo n.º 4

 def test_is_transition(self, ordered_alleles, expected):
   for alleles in [ordered_alleles, reversed(ordered_alleles)]:
     self.assertEqual(variant_utils.is_transition(*alleles), expected)

Ejemplo n.º 5

Archivo: variant_utils_test.py Proyecto: kong75/deepvariant

 def test_is_transition(self, ordered_alleles, expected):
   for alleles in [ordered_alleles, reversed(ordered_alleles)]:
     self.assertEqual(variant_utils.is_transition(*alleles), expected)