def test_prox_multi(self):
"""...Test of ProxMulti
"""
coeffs = self.coeffs.copy().astype(self.dtype)
double_coeffs = np.concatenate([coeffs, coeffs]).astype(self.dtype)
half_size = coeffs.shape[0]
full_size = double_coeffs.shape[0]
l_tv = 0.5
t = 1.7
prox_tv = ProxTV(strength=l_tv).astype(self.dtype)
prox_tv_multi = ProxTV(strength=l_tv,
range=(0, half_size)).astype(self.dtype)
l_enet = 3e-2
ratio = .3
prox_enet = ProxElasticNet(l_enet, ratio=ratio).astype(self.dtype)
prox_enet_multi = ProxElasticNet(l_enet,
ratio=ratio,
range=(half_size,
full_size)).astype(self.dtype)
prox_multi = ProxMulti((prox_tv_multi, prox_enet_multi))
# Test that the value of the prox is correct
val_multi = prox_multi.value(double_coeffs)
val_correct = prox_enet.value(coeffs) + prox_tv.value(coeffs)
self.assertAlmostEqual(val_multi,
val_correct,
places=self.decimal_places)
# Test that the prox is correct
out1 = prox_tv.call(coeffs, step=t)
out2 = prox_enet.call(coeffs, step=t)
out_correct = np.concatenate([out1, out2])
out_multi = prox_multi.call(double_coeffs, step=t)
np.testing.assert_almost_equal(out_multi, out_correct)
# An example with overlapping coefficients
start1 = 5
end1 = 13
start2 = 10
end2 = 17
prox_tv = ProxTV(strength=l_tv,
range=(start1, end1)).astype(self.dtype)
prox_enet = ProxElasticNet(strength=l_enet,
ratio=ratio,
range=(start2, end2)).astype(self.dtype)
prox_multi = ProxMulti((prox_tv, prox_enet))
val_correct = prox_tv.value(double_coeffs)
val_correct += prox_enet.value(double_coeffs)
val_multi = prox_multi.value(double_coeffs)
self.assertAlmostEqual(val_multi, val_correct)
out_correct = prox_tv.call(double_coeffs)
out_correct = prox_enet.call(out_correct)
out_multi = prox_multi.call(double_coeffs)
np.testing.assert_almost_equal(out_multi, out_correct)
def test_ProxElasticNet(self):
"""...Test of ProxElasticNet
"""
coeffs = self.coeffs.copy()
l_enet = 3e-2
ratio = .3
t = 1.7
prox_enet = ProxElasticNet(l_enet, ratio=ratio)
prox_l1 = ProxL1(ratio * l_enet)
prox_l2 = ProxL2Sq((1 - ratio) * l_enet)
self.assertAlmostEqual(
prox_enet.value(coeffs),
prox_l1.value(coeffs) + prox_l2.value(coeffs), delta=1e-15)
out = coeffs.copy()
prox_l1.call(out, t, out)
prox_l2.call(out, t, out)
assert_almost_equal(prox_enet.call(coeffs, step=t), out, decimal=10)
prox_enet = ProxElasticNet(l_enet, ratio=ratio, positive=True)
prox_l1 = ProxL1(ratio * l_enet, positive=True)
prox_l2 = ProxL2Sq((1 - ratio) * l_enet, positive=True)
self.assertAlmostEqual(
prox_enet.value(coeffs),
prox_l1.value(coeffs) + prox_l2.value(coeffs), delta=1e-15)
out = coeffs.copy()
prox_l1.call(out, t, out)
prox_l2.call(out, t, out)
assert_almost_equal(prox_enet.call(coeffs, step=t), out, decimal=10)
def compare_solver_sdca(self):
"""...Compare SDCA solution with SVRG solution
"""
np.random.seed(12)
n_samples = Test.n_samples
n_features = Test.n_features
for fit_intercept in [True, False]:
y, X, coeffs0, interc0 = TestSolver.generate_logistic_data(
n_features, n_samples)
model = ModelLogReg(fit_intercept=fit_intercept).fit(X, y)
ratio = 0.5
l_enet = 1e-2
# SDCA "elastic-net" formulation is different from elastic-net
# implementation
l_l2_sdca = ratio * l_enet
l_l1_sdca = (1 - ratio) * l_enet
sdca = SDCA(l_l2sq=l_l2_sdca, max_iter=100, verbose=False, tol=0,
seed=Test.sto_seed).set_model(model)
prox_l1 = ProxL1(l_l1_sdca)
sdca.set_prox(prox_l1)
coeffs_sdca = sdca.solve()
# Compare with SVRG
svrg = SVRG(max_iter=100, verbose=False, tol=0,
seed=Test.sto_seed).set_model(model)
prox_enet = ProxElasticNet(l_enet, ratio)
svrg.set_prox(prox_enet)
coeffs_svrg = svrg.solve(step=0.1)
np.testing.assert_allclose(coeffs_sdca, coeffs_svrg)
def test_dense_and_sparse_match(self):
"""...Test in SVRG that dense and sparse code matches in all possible
settings
"""
variance_reductions = ['last', 'rand']
rand_types = ['perm', 'unif']
seed = 123
tol = 0.
max_iter = 50
n_samples = 500
n_features = 20
# Crazy prox examples
proxs = [
ProxTV(strength=1e-2, range=(5, 13),
positive=True).astype(self.dtype),
ProxElasticNet(strength=1e-2, ratio=0.9).astype(self.dtype),
ProxEquality(range=(0, n_features)).astype(self.dtype),
ProxL1(strength=1e-3, range=(5, 17)).astype(self.dtype),
ProxL1w(strength=1e-3, weights=np.arange(5, 17, dtype=np.double),
range=(5, 17)).astype(self.dtype),
]
for intercept in [-1, None]:
X, y = self.simu_linreg_data(dtype=self.dtype, interc=intercept,
n_features=n_features,
n_samples=n_samples)
fit_intercept = intercept is not None
model_dense, model_spars = self.get_dense_and_sparse_linreg_model(
X, y, dtype=self.dtype, fit_intercept=fit_intercept)
step = 1 / model_spars.get_lip_max()
for variance_reduction, rand_type, prox in product(
variance_reductions, rand_types, proxs):
solver_sparse = SVRG(step=step, tol=tol, max_iter=max_iter,
verbose=False,
variance_reduction=variance_reduction,
rand_type=rand_type, seed=seed)
solver_sparse.set_model(model_spars).set_prox(prox)
solver_dense = SVRG(step=step, tol=tol, max_iter=max_iter,
verbose=False,
variance_reduction=variance_reduction,
rand_type=rand_type, seed=seed)
solver_dense.set_model(model_dense).set_prox(prox)
solver_sparse.solve()
solver_dense.solve()
places = 7
if self.dtype is "float32":
places = 3
np.testing.assert_array_almost_equal(solver_sparse.solution,
solver_dense.solution,
decimal=places)
def test_asaga_solver(self):
"""...Check ASAGA solver for a Logistic Regression with Elastic net
penalization
"""
seed = 1398
np.random.seed(seed)
n_samples = 4000
n_features = 30
weights = weights_sparse_gauss(n_features, nnz=3).astype(self.dtype)
intercept = 0.2
penalty_strength = 1e-3
sparsity = 1e-4
features = sparse.rand(n_samples, n_features, density=sparsity,
format='csr', random_state=8).astype(self.dtype)
simulator = SimuLogReg(weights, n_samples=n_samples, features=features,
verbose=False, intercept=intercept,
dtype=self.dtype)
features, labels = simulator.simulate()
model = ModelLogReg(fit_intercept=True)
model.fit(features, labels)
prox = ProxElasticNet(penalty_strength, ratio=0.1, range=(0,
n_features))
solver_step = 1. / model.get_lip_max()
saga = SAGA(step=solver_step, max_iter=100, tol=1e-10, verbose=False,
n_threads=1, record_every=10, seed=seed)
saga.set_model(model).set_prox(prox)
saga.solve()
asaga = SAGA(step=solver_step, max_iter=100, tol=1e-10, verbose=False,
n_threads=2, record_every=10, seed=seed)
asaga.set_model(model).set_prox(prox)
asaga.solve()
np.testing.assert_array_almost_equal(saga.solution, asaga.solution,
decimal=4)
self.assertGreater(np.linalg.norm(saga.solution[:-1]), 0)
def test_solver_gfb(self):
"""...Check GFB's solver for a Logistic Regression with ElasticNet
penalization
Notes
-----
Using GFB solver with l1 and l2 penalizations is obviously a bad
idea as ElasticNet prox is meant to do this, but it allows us to
compare with another algorithm.
"""
n_samples = 200
n_features = 10
y, X, w, c = TestSolver.generate_logistic_data(n_features=n_features,
n_samples=n_samples,
dtype=self.dtype)
strength = 1e-3
ratio = 0.3
prox_elasticnet = ProxElasticNet(strength, ratio).astype(self.dtype)
prox_l1 = ProxL1(strength * ratio).astype(self.dtype)
prox_l2 = ProxL2Sq(strength * (1 - ratio)).astype(self.dtype)
# First we get GFB solution with prox l1 and prox l2
gfb = GFB(tol=1e-13, max_iter=1000, verbose=False, step=1)
TestSolver.prepare_solver(gfb, X, y, prox=None)
gfb.set_prox([prox_l1, prox_l2])
gfb_solution = gfb.solve()
# Then we get AGD solution with prox ElasticNet
agd = AGD(tol=1e-13,
max_iter=1000,
verbose=False,
step=0.5,
linesearch=False)
TestSolver.prepare_solver(agd, X, y, prox=prox_elasticnet)
agd_solution = agd.solve()
# Finally we assert that both algorithms lead to the same solution
np.testing.assert_almost_equal(gfb_solution, agd_solution, decimal=1)
n_samples = 40000
n_features = 20000
sparsity = 1e-4
penalty_strength = 1e-5
weights = weights_sparse_gauss(n_features, nnz=1000)
intercept = 0.2
features = sparse.rand(n_samples, n_features, density=sparsity, format='csr')
simulator = SimuLogReg(weights, n_samples=n_samples, features=features,
verbose=False, intercept=intercept)
features, labels = simulator.simulate()
model = ModelLogReg(fit_intercept=True)
model.fit(features, labels)
prox = ProxElasticNet(penalty_strength, ratio=0.5, range=(0, n_features))
svrg_step = 1. / model.get_lip_max()
test_n_threads = [1, 2, 4]
fig, axes = plt.subplots(1, 2, figsize=(8, 4))
for ax, SolverClass in zip(axes, [SVRG, SAGA]):
solver_list = []
solver_labels = []
for n_threads in test_n_threads:
solver = SolverClass(step=svrg_step, seed=seed, max_iter=50,
verbose=False, n_threads=n_threads, tol=0,
record_every=3)
solver.set_model(model).set_prox(prox)
from cycler import cycler
from tick.simulation import weights_sparse_gauss
from tick.solver import SVRG
from tick.linear_model import SimuLogReg, ModelLogReg
from tick.prox import ProxElasticNet
from tick.plot import plot_history
n_samples, n_features, = 5000, 50
weights0 = weights_sparse_gauss(n_features, nnz=10)
intercept0 = 0.2
X, y = SimuLogReg(weights=weights0, intercept=intercept0,
n_samples=n_samples, seed=123, verbose=False).simulate()
model = ModelLogReg(fit_intercept=True).fit(X, y)
prox = ProxElasticNet(strength=1e-3, ratio=0.5, range=(0, n_features))
x0 = np.zeros(model.n_coeffs)
optimal_step = 1 / model.get_lip_max()
tested_steps = [optimal_step, 1e-2 * optimal_step, 10 * optimal_step]
solvers = []
solver_labels = []
for step in tested_steps:
svrg = SVRG(max_iter=30, tol=1e-10, verbose=False)
svrg.set_model(model).set_prox(prox)
svrg.solve(step=step)
svrg_bb = SVRG(max_iter=30, tol=1e-10, verbose=False, step_type='bb')
svrg_bb.set_model(model).set_prox(prox)
import matplotlib.pyplot as plt
from tick.prox import ProxL1, ProxElasticNet, ProxL2Sq, \
ProxPositive, ProxSlope, ProxTV, ProxZero, ProxBinarsity, ProxGroupL1, \
ProxEquality, ProxL1w
np.random.seed(12)
x = np.random.randn(50)
a, b = x.min() - 1e-1, x.max() + 1e-1
s = 0.4
proxs = [
ProxZero(),
ProxPositive(),
ProxL2Sq(strength=s),
ProxL1(strength=s),
ProxElasticNet(strength=s, ratio=0.5),
ProxSlope(strength=s),
ProxTV(strength=s),
ProxEquality(range=(25, 40)),
ProxL1w(strength=s, weights=0.1 * np.arange(50, dtype=np.double)),
ProxGroupL1(strength=2 * s,
blocks_start=np.arange(0, 50, 10),
blocks_length=10 * np.ones((5, ))),
ProxBinarsity(strength=s,
blocks_start=np.arange(0, 50, 10),
blocks_length=10 * np.ones((5, )))
]
fig, _ = plt.subplots(3, 4, figsize=(16, 12), sharey=True, sharex=True)
fig.axes[0].stem(x)
fig.axes[0].set_title("original vector", fontsize=16)
