def run(self):
# initialize windows side
tosdb.admin_init(self._addr, AINIT_TIMEOUT)
tosdb.vinit(root=self._dll_root)
# create block
blk = tosdb.VTOSDB_DataBlock(self._addr, BLOCK_SIZE, date_time=True)
blk.add_items(*(self._symbols))
blk.add_topics('last')
if args.vol:
blk.add_topics('volume')
# generate filename
dprfx = _strftime("%Y%m%d", _localtime())
isec = int(self._intrvl * 60)
for s in self._symbols:
#
# create GetOnTimeInterval object for each symbol
#
p = self._out_dir + '/' + dprfx + '_' \
+ s.replace('/','-S-').replace('$','-D-').replace('.','-P-') \
+'_' + _val_type + '_' + str(self._intrvl) + 'min.tosdb'
iobj = _Goti.send_to_file(blk, s, p, _TI.vals[isec], isec/10)
print(repr(iobj), file=_stderr)
self._iobjs.append(iobj)
for i in self._iobjs:
if i:
i.join()
while(True): # why??
_sleep(10)
def __init__(self, addr, auth, outdir, pidfile, errorfile, interval, itype,
symbols):
_Daemon.__init__(self, pidfile, stderr=errorfile)
self._addr = addr
self._auth = auth
self._outdir = _path(outdir)
self._interval = interval
self._has_vol = 'V' in itype
self._is_ohlc = 'OHLC' in itype
self._symbols = symbols
self._iobj = None
# date prefix for filename
dprfx = _strftime("%Y%m%d", _localtime())
# generate paths from filenames
self._paths = {s.upper() : (_path(self._outdir) + '/' + dprfx + '_' \
+ s.replace('/','-S-').replace('$','-D-').replace('.','-P-') \
+ '_' + itype + '_' + str(self._interval) + 'sec.tosdb') \
for s in self._symbols}
# create callback object
if self._has_vol:
self._callback = _ohlcv_callbacks._Matcher(
'ohlc' if self._is_ohlc else 'c', self._write)
else:
l = (lambda o: str((o.o, o.h, o.l, o.c))) if self._is_ohlc else (
lambda o: str(o.c))
self._callback = _ohlcv_callbacks._Basic(l, self._write)
def spawn(dllroot,outdir,intrvl,val_type,*symbols):
if val_type not in ['OHLCV','OHLC','CV','C']:
raise ValueError("invalid val_type (OHLCV,OHLC,CV or C)")
exc_cmd = "from tosdb.intervalize import " + CLS_BASE + val_type + " as _Goti"
exec(exc_cmd, globals())
tosdb.init(root=dllroot)
# create block
blk = tosdb.TOSDB_DataBlock(BLOCK_SIZE, date_time=True)
blk.add_items(*(symbols))
blk.add_topics('last')
if 'V' in val_type:
blk.add_topics('volume')
# generate filename
dprfx = _strftime("%Y%m%d", _localtime())
isec = int(intrvl * 60)
iobjs = list()
for s in symbols:
#
# create GetOnTimeInterval object for each symbol
#
p = _path(outdir) + '/' + dprfx + '_' \
+ s.replace('/','-S-').replace('$','-D-').replace('.','-P-') \
+ '_' + val_type + '_' + str(intrvl) + 'min.tosdb'
iobj = _Goti.send_to_file(blk, s, p, getattr(_TI,_TI.val_dict[isec]), isec/10)
print( repr(iobj) )
iobjs.append( iobj )
return iobjs
def spawn(dllroot,outdir,intrvl,val_type,*symbols):
if val_type not in ['OHLCV','OHLC','CV','C']:
raise ValueError("invalid val_type (OHLCV,OHLC,CV or C)")
exec( "from tosdb.intervalize import " + CLS_BASE + val_type + " as _Goti",
globals() )
tosdb.init( root=dllroot )
# create block
blk = tosdb.TOSDB_DataBlock( BLOCK_SIZE, date_time=True)
blk.add_items( *(symbols) )
blk.add_topics( 'last' )
if 'V' in val_type:
blk.add_topics( 'volume' )
# generate filename
dprfx = _strftime("%Y%m%d", _localtime())
isec = int(intrvl * 60)
iobjs = list()
for s in symbols:
#
# create GetOnTimeInterval object for each symbol
#
p = _path(outdir) + '/' + dprfx + '_' + \
s.replace('/','-S-').replace('$','-D-').replace('.','-P-') + \
'_' + val_type + '_' + str(intrvl) + 'min.tosdb'
iobj = _Goti.send_to_file( blk, s, p, getattr(_TI,_TI.val_dict[ isec ]),
isec/10)
print( repr(iobj) )
iobjs.append( iobj )
return iobjs
def log_conn(msg, addr, file=_stdout, **info):
t = _strftime("%m/%d/%Y %H:%M:%S")
msg = msg[:40].ljust(40)
s = "+" if file == _stdout else "-"
print(s, t, " " + s + " ", msg, str(addr), file=file)
for k in info:
print(' ', k + ":", str(info[k]), file=file)
def run(self):
# initialize windows side
tosdb.admin_init(self._addr, AINIT_TIMEOUT)
tosdb.vinit(root=self._dll_root)
# create block
blk = tosdb.VTOSDB_DataBlock(self._addr, BLOCK_SIZE, date_time=True)
blk.add_items(*(self._symbols))
blk.add_topics('last')
if args.vol:
blk.add_topics('volume')
# generate filename
dprfx = _strftime("%Y%m%d", _localtime())
isec = int(self._intrvl * 60)
for s in self._symbols:
#
# create GetOnTimeInterval object for each symbol
#
p = self._out_dir + '/' + dprfx + '_' + \
s.replace('/','-S-').replace('$','-D-').replace('.','-P-') + \
'_' + _val_type + '_' + str(self._intrvl) + 'min.tosdb'
iobj = _Goti.send_to_file(blk, s, p, _TI.vals[isec], isec / 10)
print(repr(iobj), file=_stderr)
self._iobjs.append(iobj)
for i in self._iobjs:
if i:
i.join()
while (True):
_sleep(10)
def edit_file(time: tuple, directory=_todo_conf.get_directory()):
filepath = _path.join(directory, ''.join((_strftime('%Y_%m_%d',
time), '.md')))
try:
create_file(time, directory)
except FileExistsError:
pass
_call(['editor', filepath])
def addLog(self):
argvs = _sys.argv
command = "%s " % _strftime("%B-%d-%Y %H:%M", _gmtime())
for ii in range(len(argvs)):
command = command + " " + argvs[ii]
# end for
self.comments.append(" ")
self.comments.append(command)
def encrypt(in_file,
passwd='',
cipher='seed',
iter=0,
out_file=_strftime('enc_%y%m%d_%H%M%S'),
pbkdf2=False,
b64=False):
# eliminate
if (not _isfile(in_file)):
return {"status": "negative", "error": f"file not found: {in_file}"}
if (not str(iter).isdigit() and not iter >= 0):
return {"status": "negative", "error": "Iter: Invalied Itration"}
if (cipher not in CIPHERS):
return {"status": "negative", "error": "Cipher: Invalied Cipher"}
if (len(out_file) == 0):
return {"status": "negative", "error": "OutFile: Nofile given"}
# Proceed
const_string = f'openssl {cipher} -in {in_file} -out {out_file} -k "{passwd}"'
if (iter > 0):
const_string += f' -iter {str(iter)}'
if (pbkdf2):
const_string += ' -pbkdf2'
if (b64):
const_string += ' -a'
# exec
_system(const_string)
return {
"status": "positive",
"cipher": cipher,
"in_file": in_file,
"out_file": out_file,
"iter": iter,
"passwd": "*" * len(passwd),
"pbkdf2": pbkdf2,
"base64": b64
}
def convert2to1(self, source, idx=1, idz=[1]):
idy = 2
if idx == 2:
idy = 1
# end if
nx = source.DimSize[idx - 1]
ny = source.DimSize[idy - 1]
nz = len(idz)
self.new(dimno=1, valno=ny * nz, dimsize=[nx])
self.Name = source.Name
self.ShotNo = source.ShotNo
self.SubNo = source.SubNo
self.Date = _strftime("%m/%d/%Y %H:%M", _gmtime())
self.DimName = [source.DimName[idx - 1]]
self.DimUnit = [source.DimUnit[idx - 1]]
self.ValName = []
self.ValUnit = []
self.comments = source.comments
if idx == 1:
xx = source.getDimData(dimid=idx - 1)
yy = source.getDimData(dimid=idy - 1)
for ii in range(nz):
self.data[:, ii + 1::nz] = source.getValData(valid=idz[ii] - 1)
# end for
else:
xx = source.getDimData(dimid=idx).transpose()
yy = source.getDimData(dimid=idy).transpose()
for ii in range(nz):
self.data[:, ii + 1::nz] = source.getValData(valid=idz[ii] -
1).transpose()
# end for
# end if
self.data[:, 0] = xx[:, 0]
for j in range(ny):
for ii in range(nz):
valname = source.ValName[idz[ii] - 1] + "@%.6E" % yy[
0, j] + "(%s)" % source.DimUnit[idy - 1]
self.ValName.append(valname)
self.ValUnit.append(source.ValUnit[idz[ii] - 1])
def __init__(self, addr, auth, outdir, pidfile, errorfile, interval, itype, symbols):
_Daemon.__init__(self, pidfile, stderr = errorfile)
self._addr = addr
self._auth = auth
self._outdir = _path(outdir)
self._interval = interval
self._has_vol = 'V' in itype
self._is_ohlc = 'OHLC' in itype
self._symbols = symbols
self._iobj = None
# date prefix for filename
dprfx = _strftime("%Y%m%d", _localtime())
# generate paths from filenames
self._paths = {s.upper() : (_path(self._outdir) + '/' + dprfx + '_' \
+ s.replace('/','-S-').replace('$','-D-').replace('.','-P-') \
+ '_' + itype + '_' + str(self._interval) + 'sec.tosdb') \
for s in self._symbols}
# create callback object
if self._has_vol:
self._callback = _ohlcv_callbacks._Matcher('ohlc' if self._is_ohlc else 'c', self._write)
else:
l = (lambda o: str((o.o, o.h, o.l, o.c))) if self._is_ohlc else (lambda o: str(o.c))
self._callback = _ohlcv_callbacks._Basic(l, self._write)
def convert1to2(self,
source,
ydata,
yname="",
yunit="",
zname="",
zunit=""):
self.new(dimno=2, valno=1, dimsize=[source.DimSize[0], source.ValNo])
self.Name = source.Name
self.ShotNo = source.ShotNo
self.SubNo = source.SubNo
self.Date = _strftime("%m/%d/%Y %H:%M", _gmtime())
self.DimName.append(source.DimName)
self.DimName.append(yname)
self.DimUnit.append(source.DimUnit)
self.DimUnit.append(yunit)
self.ValName.append(zname)
self.ValUnit.append(zunit)
self.comments = source.comments
xx, yy = _np.meshgrid(source.data[:, 0], ydata)
self.data[:, 0] = xx.reshape(_np.prod(self.DimSize), order='F')
self.data[:, 1] = yy.reshape(_np.prod(self.DimSize), order='F')
self.data[:, 2] = source.data[:, 1:].reshape(_np.prod(self.DimSize))
def spawn(outdir, interval, is_ohlc, has_vol, *symbols):
global _paths
itype = ("OHLC" if is_ohlc else "C") + ("V" if has_vol else "")
# date prefix for filename
dprfx = _strftime("%Y%m%d", _localtime())
# generate paths from filenames
_paths = {s.upper() : (_path(outdir) + '/' + dprfx + '_' \
+ s.replace('/','-S-').replace('$','-D-').replace('.','-P-') \
+ '_' + itype + '_' + str(interval) + 'sec.tosdb')
for s in symbols}
# create callback object
if has_vol:
callback = _ohlcv_callbacks._Matcher('ohlc' if is_ohlc else 'c', _write)
else:
l = (lambda o: str((o.o, o.h, o.l, o.c))) if is_ohlc else (lambda o: str(o.c))
callback = _ohlcv_callbacks._Basic(l, _write)
# create block
blk = tosdb.TOSDB_ThreadSafeDataBlock(BLOCK_SIZE, date_time=True)
blk.add_items(*(symbols))
blk.add_topics('last')
if has_vol:
blk.add_topics('volume')
# create interval object
IObj = OHLCIntervals if is_ohlc else CIntervals
iobj = IObj(blk, interval, interval_cb=callback.callback)
try:
while iobj.running():
_sleep(1)
except:
iobj.stop()
finally:
blk.close()
def strftime(self, frmt):
return _strftime(frmt,
self._tfunc(self._intervals_since_epoch * self._isec))
def __str__( self ):
return _strftime( "%m/%d/%y %H:%M:%S",
_localtime( self._mktime ) ) + " " + str(self.micro)
def create_file(time: tuple, directory=_todo_conf.get_directory()):
filepath = _path.join(directory, ''.join((_strftime('%Y_%m_%d',
time), '.md')))
with open(filepath, mode='x') as f:
f.write(''.join(('# Séance du ', _strftime('%Y-%m-%d', time))))
def commit_all(time=None, directory=_todo_conf.get_directory()):
if time is not None:
filepath = ''.join((_strftime('%Y_%m_%d', time), '.md'))
_call(['git', '-C', directory, 'add', filepath])
_call(['git', '-C', directory, 'commit', '-a'])
def time(self):
from time import strftime as _strftime
return _strftime("%H:%M:%S")
def strftime(format, t=None):
return py2_decode(_strftime(py2_encode(format)))
def __str__(self):
ftime = _strftime("%m/%d/%y %H:%M:%S", _localtime(self._mktime))
return ftime + " " + str(self.micro)
def writeHeader(self, filename=None):
self.Date = _strftime("%m/%d/%Y %H:%M", _gmtime())
for ii in range(self.DimNo):
if ii == 0:
dimname = "'%s'" % self.DimName[ii]
dimsize = "%d" % self.DimSize[ii]
dimunit = "'%s'" % self.DimUnit[ii]
else:
dimname = dimname + ", '%s'" % self.DimName[ii]
dimsize = dimsize + ", %d" % self.DimSize[ii]
dimunit = dimunit + ", '%s'" % self.DimUnit[ii]
# end if
# end for range dimensions
for ii in range(self.ValNo):
if ii == 0:
valname = "'%s'" % self.ValName[ii]
valunit = "'%s'" % self.ValUnit[ii]
else:
valname = valname + ", '%s'" % self.ValName[ii]
valunit = valunit + ", '%s'" % self.ValUnit[ii]
# end if
# end for in range value number
if filename is None:
"""printing to stdout"""
print("# [Parameters]")
print("# Name = '%s'" % self.Name)
print("# ShotNo = %d" % self.ShotNo)
print("# SubNo = %d" % self.SubNo)
print("# Date = '%s'" % self.Date)
print("#")
print("# DimNo = %d" % self.DimNo)
print("# DimName = %s" % dimname)
print("# DimSize = %s" % dimsize)
print("# DimUnit = %s" % dimunit)
print("#")
print("# ValNo = %d" % self.ValNo)
print("# ValName = %s" % valname)
print("# ValUnit = %s" % valunit)
print("#")
print("# [Comments]")
for line in self.comments:
print("# %s" % line)
print("#")
print("# [Data]")
else:
""" printting into a file """
try:
with open(filename, 'w') as fp:
print("# [Parameters]", file=fp)
print("# Name = '%s'" % self.Name, file=fp)
print("# ShotNo = %d" % self.ShotNo, file=fp)
print("# SubNo = %d" % self.SubNo, file=fp)
print("# Date = '%s'" % self.Date, file=fp)
print("#", file=fp)
print("# DimNo = %d" % self.DimNo, file=fp)
print("# DimName = %s" % dimname, file=fp)
print("# DimSize = %s" % dimsize, file=fp)
print("# DimUnit = %s" % dimunit, file=fp)
print("#", file=fp)
print("# ValNo = %d" % self.ValNo, file=fp)
print("# ValName = %s" % valname, file=fp)
print("# ValUnit = %s" % valunit, file=fp)
print("#", file=fp)
print("# [Comments]", file=fp)
for line in self.comments:
print("# %s" % line, file=fp)
print("# filename = %s (written by egDataFormatIO)" %
filename,
file=fp)
print("#", file=fp)
print("# [Data]", file=fp)
# end with open filename
except:
""" python2: when the with_statement fails """
fp = open(filename, 'w')
print("# [Parameters]", file=fp)
print("# Name = '%s'" % self.Name, file=fp)
print("# ShotNo = %d" % self.ShotNo, file=fp)
print("# SubNo = %d" % self.SubNo, file=fp)
print("# Date = '%s'" % self.Date, file=fp)
print("#", file=fp)
print("# DimNo = %d" % self.DimNo, file=fp)
print("# DimName = %s" % dimname, file=fp)
print("# DimSize = %s" % dimsize, file=fp)
print("# DimUnit = %s" % dimunit, file=fp)
print("#", file=fp)
print("# ValNo = %d" % self.ValNo, file=fp)
print("# ValName = %s" % valname, file=fp)
print("# ValUnit = %s" % valunit, file=fp)
print("#", file=fp)
print("# [Comments]", file=fp)
for line in self.comments:
print("# %s" % line, file=fp)
print("# filename = %s (written by egDataFormatIO)" % filename,
file=fp)
print("#", file=fp)
print("# [Data]", file=fp)
fp.close()
finally:
try:
fp.close()
except:
pass
def strftime(self, frmt):
return _strftime(frmt,self._tfunc(self._intervals_since_epoch * self._isec))
def strftime(format, t=TEST_NOW):
return _strftime(format, t)
def x2dspec(x2dfile, traceloc='max', extrsize='stsci', bksize='stsci', bkoff='stsci', x1dfile=None, fitsout=None,
overwrite=True, bkmask=0):
"""
Creates a spectrum from HST STIS (or maybe also COS?) data from HST using the x2d file provided by the default
STScI pipeline.
Parameters
----------
x2dfile : str
Path of the x2d file.
traceloc : {int|'max'|'lya'}, optional
Location of the spectral trace.
int : the midpoint pixel
'max' : use the mean y-location of the pixel with highest S/N
extrsize, bksize, bkoff : {int|'stsci'}, optional
The height of the signal extraction region, the height of the
background extraction regions, and the offset above and below the
spectral trace at which to center the background extraction regions.
'stsci' : use the value used by STScI in making the x1d (requires
x1dfile)
int : user specified value in pixels
x1dfile : str, optional if 'stsci' is not specfied for any other keyword
Path of the x1d file.
fitsout : str, optional
Path for saving a FITS file version of the spectrum.
overwrite : {True|False}, optional
Whether to overwrite the existing FITS file.
bkmask : int, optional
Data quality flags to mask the background. Background pixels that have
at least one of these flags will be discarded.
Returns
-------
spectbl : astropy table
The wavelength, flux, error, and data quality flag values of the extracted
spectrum.
Cautions
--------
Using a non-stsci extraction size will cause a systematic error because a
flux correction factor is applied that assumes the STScI extraction
ribbon was used.
This still isn't as good as an x1d, mainly because the wavelength dependency
of the slit losses is not accounted for.
"""
x2d = _fits.open(x2dfile)
# get the flux and error from the x2d
f, e, q = x2d['sci'].data, x2d['err'].data, x2d['dq'].data
inst = x2d[0].header['instrume']
if inst != 'STIS':
raise NotImplementedError("This function cannot handle {} data at "
"present.".format(inst))
# make sure x1d is available if 'stsci' is specified for anything
if 'stsci' in [traceloc, extrsize, bksize, bkoff]:
try:
x1d = _fits.open(x1dfile)
xd = x1d[1].data
except:
raise ValueError("An open x1d file is needed if 'stsci' is "
"specified for any of the keywords.")
# get the ribbon values
if extrsize == 'stsci': extrsize = _np.mean(xd['extrsize'])
if bksize == 'stsci': bksize = _np.mean([xd['bk1size'], xd['bk2size']])
if bkoff == 'stsci':
bkoff = _np.mean(_np.abs([xd['bk1offst'], xd['bk2offst']]))
# select the trace location
if traceloc == 'max':
sn = f / e
sn[q > 0] = 0.0
sn[e <= 0.0] = 0.0
maxpixel = _np.nanargmax(sn)
traceloc = _np.unravel_index(maxpixel, f.shape)[0]
if traceloc == 'lya':
xmx = _np.nanmedian(_np.argmax(f, 1))
redsum = _np.nansum(f[:, xmx+4:xmx+14], 1)
smoothsum = data_structures._smooth_sum(redsum, extrsize) / float(extrsize)
traceloc = _np.argmax(smoothsum) + extrsize/2
# convert everything to integers so we can make slices
try:
intrnd = lambda x: int(round(x))
traceloc, extrsize, bksize, bkoff = map(intrnd, [traceloc, extrsize, bksize, bkoff])
except ValueError:
raise ValueError("Invalid input for either traceloc, extrsize, bksize, "
"or bkoff. See docstring.")
# convert intensity to flux
fluxfac = x2d['sci'].header['diff2pt']
f, e = f * fluxfac, e * fluxfac
# get slices for the ribbons
sigslice = slice(traceloc - extrsize // 2, traceloc + extrsize // 2 + 1)
bk0slice = slice(traceloc - bkoff - bksize // 2, traceloc - bkoff + bksize // 2 + 1)
bk1slice = slice(traceloc + bkoff - bksize // 2, traceloc + bkoff + bksize // 2 + 1)
slices = [sigslice, bk0slice, bk1slice]
# mask bad values in background regions
if bkmask:
badpix = (q & bkmask) > 0
badpix[sigslice] = False # but don't modify the signal region
f[badpix], e[badpix], q[badpix] = 0.0, 0.0, 0
# make a background area vector to account for masked pixels
goodpix = ~badpix
bkareas = [_np.sum(goodpix[slc, :], 0) for slc in slices[1:]]
bkarea = sum(bkareas)
else:
bkarea = bksize * 2
# sum fluxes in each ribbon
fsig, fbk0, fbk1 = [_np.sum(f[slc, :], 0) for slc in slices]
# sum errors in each ribbon
esig, ebk0, ebk1 = [_np.sqrt(_np.sum(e[slc, :]**2, 0)) for slc in slices]
# condense dq flags in each ribbon
bitor = lambda a: reduce(lambda x, y: x | y, a)
qsig, qbk0, qbk1 = [bitor(q[slc, :]) for slc in slices]
# subtract the background
area_ratio = float(extrsize) / bkarea
f1d = fsig - area_ratio * (fbk0 + fbk1)
e1d = _np.sqrt(esig**2 + (area_ratio * ebk0)**2 + (area_ratio * ebk1)**2)
# make sure no zero errors
e1d[e1d == 0] = e1d.min()
# propagate the data quality flags
q1d = qsig | qbk0 | qbk1
# construct wavelength array
wedges = _get_x2d_waveedges(x2d)
w0, w1 = wedges[:-1], wedges[1:]
# construct exposure time array
expt = _np.ones(f.shape[0]) * x2d['sci'].header['exptime']
#region PUT INTO TABLE
# make data columns
colnames = ['w0', 'w1', 'w', 'flux', 'error', 'dq', 'exptime']
units = ['Angstrom'] * 3 + ['ergs/s/cm2/Angstrom'] * 2 + ['s']
descriptions = ['left (short,blue) edge of the wavelength bin',
'right (long,red) edge of the wavelength bin',
'midpoint of the wavelength bin',
'average flux over the bin',
'error on the flux',
'data quality flags',
'cumulative exposure time for the bin']
dataset = [w0, w1, (w0+w1)/2., f1d, e1d, q1d, expt]
cols = [_tbl.Column(d, n, unit=u, description=dn) for d, n, u, dn in
zip(dataset, colnames, units, descriptions)]
# make metadata dictionary
descriptions = {'rootname': 'STScI identifier for the dataset used to '
'create this spectrum.'}
meta = {'descriptions': descriptions,
'rootname': x2d[1].header['rootname'],
'traceloc': traceloc,
'extrsize': extrsize,
'bkoff': bkoff,
'bksize': bksize}
# put into table
tbl = _tbl.Table(cols, meta=meta)
#endregion
#region PUT INTO FITS
if fitsout is not None:
# spectrum hdu
fmts = ['E'] * 5 + ['I', 'E']
cols = [_fits.Column(n, fm, u, array=d) for n, fm, u, d in
zip(colnames, fmts, units, dataset)]
del meta['descriptions']
spechdr = _fits.Header(meta.items())
spechdu = _fits.BinTableHDU.from_columns(cols, header=spechdr,
name='spectrum')
# make primary header
prihdr = _fits.Header()
prihdr['comment'] = ('Spectrum generated from an x2d file produced by '
'STScI. The dataset is identified with the header '
'keywrod rootname. All pixel locations refer to '
'the x2d and are indexed from 0. '
'Created with spectralPhoton software '
'http://github.com/parkus/spectralPhoton')
prihdr['date'] = _strftime('%c')
prihdr['rootname'] = x2d[1].header['rootname']
prihdu = _fits.PrimaryHDU(header=prihdr)
hdulist = _fits.HDUList([prihdu, spechdu])
hdulist.writeto(fitsout, clobber=overwrite)
#endregion
return tbl