def setup_application(application, source, datapath, apps):
print "Configuring application", application, "...",
data = tools.get_application_description(source, application, datapath)
for d in data["required_dependencies"]:
if not tools.get_dependency_info(d, datapath)["ok"]:
write_no_ok(application)
# exits
dependencies = data["required_dependencies"]
unfound_dependencies = []
for d in data["optional_dependencies"]:
if tools.get_dependency_info(d, datapath)["ok"]:
dependencies.append(d)
else:
unfound_dependencies.append(d)
for d in data["required_modules"]:
if not tools.get_module_info(d, datapath)["ok"]:
write_no_ok(application)
# exits
modules = data["required_modules"]
unfound_modules = []
for d in data["optional_modules"]:
if tools.get_module_info(d, datapath)["ok"]:
modules.append(d)
else:
unfound_modules.append(d)
all_modules = tools.get_dependent_modules(modules, datapath)
link_py_apps(os.path.join(source, "applications", application))
make_doxygen(application, source, all_modules)
make_overview(application, source, apps)
write_ok(
application, all_modules, unfound_modules,
tools.get_dependent_dependencies(all_modules, dependencies, datapath),
unfound_dependencies)
def setup_application(application, source, datapath, scons):
print "Configuring application", application, "...",
data= tools.get_application_description(source, application, datapath)
for d in data["required_dependencies"]:
if not tools.get_dependency_info(d, datapath)["ok"]:
write_no_ok(application, scons)
#exits
dependencies = data["required_dependencies"]
unfound_dependencies = []
for d in data["optional_dependencies"]:
if tools.get_dependency_info(d, datapath)["ok"]:
dependencies.append(d)
else:
unfound_dependencies.append(d)
for d in data["required_modules"]:
if not tools.get_module_info(d, datapath)["ok"]:
write_no_ok(application, scons)
# exits
modules= data["required_modules"]
unfound_modules = []
for d in data["optional_modules"]:
if tools.get_module_info(d, datapath)["ok"]:
modules.append(d)
else:
unfound_modules.append(d)
all_modules=tools.get_dependent_modules(modules, datapath)
link_py(os.path.join(source, "applications", application))
write_ok(application, all_modules,
unfound_modules,
tools.get_dependent_dependencies(all_modules, dependencies, datapath),
unfound_dependencies)
def setup_module(module, source, datapath):
sys.stdout.write("Configuring module %s ..." % module)
data = tools.get_module_description(source, module, datapath)
for d in data["required_dependencies"]:
if not tools.get_dependency_info(d, datapath)["ok"]:
print("Required dependency %s not found" % d)
write_no_ok(module)
return False, []
dependencies = data["required_dependencies"]
unfound_dependencies = []
for d in data["optional_dependencies"]:
if tools.get_dependency_info(d, datapath)["ok"]:
dependencies.append(d)
else:
unfound_dependencies.append(d)
for d in data["required_modules"]:
if not tools.get_module_info(d, datapath)["ok"]:
print("Required module IMP.%s not available" % d)
write_no_ok(module)
return False, []
modules = data["required_modules"]
unfound_modules = []
for d in data["optional_modules"]:
if tools.get_module_info(d, datapath)["ok"]:
modules.append(d)
else:
unfound_modules.append(d)
all_modules = tools.get_dependent_modules(modules, datapath)
moddir = os.path.join('IMP', '' if module == 'kernel' else module)
swig_includes = [os.path.split(x)[1]
for x in tools.get_glob(
[os.path.join(source, "modules", module, "pyext",
"include", "*.i")])] \
+ [os.path.join(moddir, os.path.split(x)[1])
for x in tools.get_glob(
[os.path.join("include", moddir, "*_macros.h")])]
swig_wrapper_includes = [os.path.join(moddir, "internal",
os.path.split(x)[1])
for x in tools.get_glob(
[os.path.join(source, "modules", module,
"include", "internal",
"swig*.h")])]
tools.mkdir(os.path.join("src", module))
tools.mkdir(os.path.join("src", module + "_swig"))
write_ok(module, all_modules, unfound_modules,
tools.get_dependent_dependencies(all_modules, dependencies,
datapath),
unfound_dependencies, swig_includes, swig_wrapper_includes)
return True, all_modules
def setup_one(module, ordered, build_system, swig):
info = tools.get_module_info(module, "/")
if not info["ok"]:
tools.rewrite("src/%s_swig.deps"%module, "")
return
includepath = get_dep_merged([module], "includepath", ordered)
swigpath = get_dep_merged([module], "swigpath", ordered)
depf= open("src/%s_swig.deps.in"%module, "w")
cmd= [swig, "-MM", "-Iinclude", "-Iswig", "-ignoremissing"]\
+ ["-I"+x for x in swigpath] + ["-I"+x for x in includepath]\
+ ["swig/IMP_%s.i"%module]
ret = subprocess.call(cmd, stdout=depf)
del depf
if ret != 0:
raise OSError("subprocess failed with return code %d: %s" \
% (ret, str(cmd)))
lines= open("src/%s_swig.deps.in"%module, "r").readlines()
names= [x[:-2].strip() for x in lines[1:]]
final_names=[_fix(x, build_system) for x in names]
final_list= "\n".join(final_names)
tools.rewrite("src/%s_swig.deps"%module, final_list)
def write_module_swig(m, source, contents, datapath, skip_import=False):
info = tools.get_module_info(m, datapath)
contents.append("""%%include "IMP/%s/%s_config.h" """ % (m, m))
for macro in info["swig_includes"]:
contents.append("%%include \"%s\"" % (macro))
if not skip_import:
contents.append("%%import \"IMP_%(module)s.i\"" % {"module": m})
def generate_overview_pages(source):
name = os.path.join("doxygen", "generated", "cmdline_tools.dox")
contents = []
contents.append("/** ")
contents.append("\\page cmdline_tools All IMP command line tools")
contents.append("""
IMP modules provide a number of command line tools.
These are listed below under their parent module:""")
for bs, g in tools.get_modules(source):
if tools.get_module_info(bs, '')['ok']:
p = pickle.load(
open(os.path.join("data", "build_info", "IMP_%s.pck" % bs)))
if len(p) > 0:
contents.append("- IMP::%s" % bs)
apps = sorted([[k] + list(v) for k, v in p.iteritems() if v],
key=lambda x: x[3])
for app in apps:
contents.append(" - [%s](\\ref %s): %s" %
(app[0], app[1], app[2]))
contents.append("""
See also the [command line tools provided by RMF](http://integrativemodeling.org/rmf/nightly/doc/executables.html)."""
)
contents.append("*/")
g = tools.DoxFileGenerator()
g.write(name, "\n".join(contents))
def setup_one(module, ordered, build_system, swig):
info = tools.get_module_info(module, "/")
if not info["ok"]:
tools.rewrite("src/%s_swig.deps" % module, "", False)
return
includepath = get_dep_merged([module], "includepath", ordered)
swigpath = get_dep_merged([module], "swigpath", ordered)
depf = open("src/%s_swig.deps.in" % module, "w")
cmd = [swig, "-MM", "-Iinclude", "-Iswig", "-ignoremissing"]\
+ ["-I" + x for x in swigpath] + ["-I" + x for x in includepath]\
+ ["swig/IMP_%s.i" % module]
lines = tools.run_subprocess(cmd).split("\n")
names = []
for x in lines:
if x.endswith("\\"):
x = x[:-1]
x = x.strip()
if not x.endswith(".h") and not x.endswith(".i") and not x.endswith(".i-in"):
continue
names.append(x)
final_names = [_fix(x, build_system) for x in names]
final_list = "\n".join(final_names)
tools.rewrite("src/%s_swig.deps" % module, final_list)
def get_all_components():
comps = {}
# If RMF is being built as part of IMP, split out its build (rather than
# building it as part of IMP.rmf)
special_dep_targets = {"RMF": RMFDependency}
for dep, cls in special_dep_targets.items():
i = tools.get_dependency_info(dep, "")
if i['ok']:
comps[dep] = cls(dep)
comps[dep].set_dep_modules(comps, [], [], special_dep_targets)
modules = tools.get_sorted_order()
for m in modules:
comps[m] = Module(m)
for m in modules:
i = tools.get_module_info(m, "")
comps[m].set_dep_modules(comps, i['modules'], i['dependencies'],
special_dep_targets)
source_dir = os.path.join(os.path.dirname(sys.argv[0]), '..', '..')
all_modules = [x[0] for x in tools.get_modules(source_dir)]
add_disabled_components(modules, all_modules, comps, "module")
return comps
def setup_one(module, ordered, build_system, swig):
info = tools.get_module_info(module, "/")
if not info["ok"]:
tools.rewrite("src/%s_swig.deps" % module, "", False)
return
includepath = get_dep_merged([module], "includepath", ordered)
swigpath = get_dep_merged([module], "swigpath", ordered)
depf = open("src/%s_swig.deps.in" % module, "w")
cmd = [swig, "-MM", "-Iinclude", "-Iswig", "-ignoremissing"]\
+ ["-I" + x for x in swigpath] + ["-I" + x for x in includepath]\
+ ["swig/IMP_%s.i" % module]
lines = tools.run_subprocess(cmd).split("\n")
names = []
for x in lines:
if x.endswith("\\"):
x = x[:-1]
x = x.strip()
if not x.endswith(".h") and not x.endswith(".i") and not x.endswith(
".i-in"):
continue
names.append(x)
final_names = [_fix(x, build_system) for x in names]
final_list = "\n".join(final_names)
tools.rewrite("src/%s_swig.deps" % module, final_list)
def write_module_swig(m, source, contents, datapath, skip_import=False):
info = tools.get_module_info(m, datapath)
contents.append("""%%include "IMP/%s/%s_config.h" """ % (m, m))
for macro in info["swig_includes"]:
contents.append("%%include \"%s\"" % (macro))
if not skip_import:
contents.append("%%import \"IMP_%(module)s.i\"" % {"module": m})
def get_all_components():
comps = {}
# If RMF is being built as part of IMP, split out its build (rather than
# building it as part of IMP.rmf)
special_dep_targets = {"RMF": RMFDependency}
for dep, cls in special_dep_targets.items():
i = tools.get_dependency_info(dep, "")
if i['ok'] and internal_dep(dep):
comps[dep] = cls(dep)
comps[dep].set_dep_modules(comps, [], [], special_dep_targets)
modules = tools.get_sorted_order()
apps = tools.get_all_configured_applications()
for m in modules:
comps[m] = Module(m)
for a in apps:
comps[a] = Application(a)
for m in modules:
i = tools.get_module_info(m, "")
comps[m].set_dep_modules(comps, i['modules'], i['dependencies'],
special_dep_targets)
for a in apps:
i = tools.get_application_info(a, "")
comps[a].set_dep_modules(comps, i['modules'], i['dependencies'],
special_dep_targets)
source_dir = os.path.join(os.path.dirname(sys.argv[0]), '..', '..')
all_modules= [x[0] for x in tools.get_modules(source_dir)]
all_apps= [x[0] for x in tools.get_applications(source_dir)]
add_disabled_components(modules, all_modules, comps, "module")
add_disabled_components(apps, all_apps, comps, "application")
return comps
def setup_module(module, source, datapath):
sys.stdout.write("Configuring module %s ..." % module)
data = tools.get_module_description(source, module, datapath)
for d in data["required_dependencies"]:
if not tools.get_dependency_info(d, datapath)["ok"]:
print("Required dependency %s not found" % d)
write_no_ok(module)
return False, []
dependencies = data["required_dependencies"]
unfound_dependencies = []
for d in data["optional_dependencies"]:
if tools.get_dependency_info(d, datapath)["ok"]:
dependencies.append(d)
else:
unfound_dependencies.append(d)
for d in data["required_modules"]:
if not tools.get_module_info(d, datapath)["ok"]:
print("Required module IMP.%s not available" % d)
write_no_ok(module)
return False, []
modules = data["required_modules"]
unfound_modules = []
for d in data["optional_modules"]:
if tools.get_module_info(d, datapath)["ok"]:
modules.append(d)
else:
unfound_modules.append(d)
all_modules = tools.get_dependent_modules(modules, datapath)
moddir = os.path.join('IMP', '' if module == 'kernel' else module)
swig_includes = [os.path.split(x)[1] for x
in tools.get_glob([os.path.join(source, "modules", module,
"pyext", "include", "*.i")])]\
+ [os.path.join(moddir, os.path.split(x)[1]) for x
in tools.get_glob([os.path.join("include", moddir, "*_macros.h")])]
swig_wrapper_includes = [os.path.join(moddir, "internal", os.path.split(x)[1]) for x
in tools.get_glob([os.path.join(source, "modules", module, "include", "internal", "swig*.h")])]
tools.mkdir(os.path.join("src", module))
tools.mkdir(os.path.join("src", module + "_swig"))
write_ok(module, all_modules,
unfound_modules, tools.get_dependent_dependencies(
all_modules, dependencies, datapath),
unfound_dependencies, swig_includes, swig_wrapper_includes)
return True, all_modules
def setup_module(module, source, datapath):
print "Configuring module", module, "...",
data = tools.get_module_description(source, module, datapath)
for d in data["required_dependencies"]:
if not tools.get_dependency_info(d, datapath)["ok"]:
print d, "not found"
write_no_ok(module)
return False, []
dependencies = data["required_dependencies"]
unfound_dependencies = []
for d in data["optional_dependencies"]:
if tools.get_dependency_info(d, datapath)["ok"]:
dependencies.append(d)
else:
unfound_dependencies.append(d)
for d in data["required_modules"]:
if not tools.get_module_info(d, datapath)["ok"]:
print "IMP." + d, "not found"
write_no_ok(module)
return False, []
modules = data["required_modules"]
unfound_modules = []
for d in data["optional_modules"]:
if tools.get_module_info(d, datapath)["ok"]:
modules.append(d)
else:
unfound_modules.append(d)
all_modules = tools.get_dependent_modules(modules, datapath)
swig_includes = [os.path.split(x)[1] for x
in tools.get_glob([os.path.join(source, "modules", module,
"pyext", "include", "*.i")])]\
+ ["IMP/" + module + "/" + os.path.split(x)[1] for x
in tools.get_glob([os.path.join("include", "IMP", module, "*_macros.h")])]
swig_wrapper_includes = ["IMP/" + module + "/internal/" + os.path.split(x)[1] for x
in tools.get_glob([os.path.join(source, "modules", module, "include", "internal", "swig*.h")])]
tools.mkdir(os.path.join("src", module))
tools.mkdir(os.path.join("src", module + "_swig"))
write_ok(module, all_modules,
unfound_modules, tools.get_dependent_dependencies(
all_modules, dependencies, datapath),
unfound_dependencies, swig_includes, swig_wrapper_includes)
return True, all_modules
def write_module_cpp(m, contents, datapath):
info = tools.get_module_info(m, datapath)
contents.append("""%%{
#include "IMP/%(module)s.h"
#include "IMP/%(module)s/%(module)s_config.h"
%%}
""" % {"module": m})
for macro in info["swig_wrapper_includes"]:
contents.append("""%%{
#include <%s>
%%}""" % (macro))
def write_module_cpp(m, contents, datapath):
info = tools.get_module_info(m, datapath)
contents.append("""%%{
#include "IMP/%(module)s.h"
#include "IMP/%(module)s/%(module)s_config.h"
%%}
""" % {"module": m})
for macro in info["swig_wrapper_includes"]:
contents.append("""%%{
#include <%s>
%%}""" % (macro))
def setup_module(module, source, datapath):
print "Configuring module", module, "...",
data= tools.get_module_description(source, module, datapath)
for d in data["required_dependencies"]:
if not tools.get_dependency_info(d, datapath)["ok"]:
print d, "not found"
write_no_ok(module)
return False
dependencies = data["required_dependencies"]
unfound_dependencies = []
for d in data["optional_dependencies"]:
if tools.get_dependency_info(d, datapath)["ok"]:
dependencies.append(d)
else:
unfound_dependencies.append(d)
for d in data["required_modules"]:
if not tools.get_module_info(d, datapath)["ok"]:
print "IMP."+d, "not found"
write_no_ok(module)
return False
modules= data["required_modules"]
unfound_modules = []
for d in data["optional_modules"]:
if tools.get_module_info(d, datapath)["ok"]:
modules.append(d)
else:
unfound_modules.append(d)
all_modules=tools.get_dependent_modules(modules, datapath)
swig_includes=[os.path.split(x)[1] for x
in tools.get_glob([os.path.join(source, "modules", module,
"pyext", "include", "*.i")])]\
+ ["IMP/"+module+"/"+os.path.split(x)[1] for x
in tools.get_glob([os.path.join("include", "IMP", module, "*_macros.h")])]
swig_wrapper_includes= ["IMP/"+module+"/internal/"+os.path.split(x)[1] for x
in tools.get_glob([os.path.join(source, "modules", module, "include", "internal", "swig*.h")])]
tools.mkdir(os.path.join("src", module))
tools.mkdir(os.path.join("src", module+"_swig"))
write_ok(module, all_modules,
unfound_modules, tools.get_dependent_dependencies(all_modules, dependencies,datapath),
unfound_dependencies, swig_includes, swig_wrapper_includes)
return True
def main():
(options, args) = parser.parse_args()
info = tools.get_module_info(options.name, "/")
if not info["ok"]:
tools.rewrite("src/%s_swig.deps"%options.name, "")
return
cmd = [options.swig, '-MM', '-Iinclude', '-Iswig', '-ignoremissing'] \
+ ["-I"+x for x in tools.split(options.swigpath)] \
+ ["-I"+x for x in tools.split(options.includepath)] \
+ ["swig/IMP_%s.i" % options.name]
outfile = open("src/%s_swig.deps.in"%options.name, "w")
ret = subprocess.call(cmd, stdout=outfile)
outfile.close()
if ret != 0:
raise OSError("subprocess failed with return code %d: %s" \
% (ret, " ".join(cmd)))
lines= open("src/%s_swig.deps.in"%options.name, "r").readlines()
names= [x[:-2].strip() for x in lines[1:]]
final_names=[_fix(x, options.build_system) for x in names]
final_list= "\n".join(final_names)
tools.rewrite("src/%s_swig.deps"%options.name, final_list)
def generate_overview_pages(source):
name = os.path.join("doxygen", "generated", "cmdline_tools.dox")
contents = []
contents.append("/** ")
contents.append("\\page cmdline_tools All IMP command line tools")
contents.append("""
IMP modules provide a number of command line tools.
These are listed below under their parent module:""")
for bs, g in tools.get_modules(source):
if tools.get_module_info(bs, '')['ok']:
p = pickle.load(open(os.path.join("data", "build_info",
"IMP_%s.pck" % bs)))
if len(p) > 0:
contents.append("- IMP::%s" % bs)
apps = sorted([[k]+list(v) for k,v in p.iteritems() if v],
key=lambda x:x[3])
for app in apps:
contents.append(" - [%s](\\ref %s): %s" % (app[0], app[1],
app[2]))
contents.append("""
See also the [command line tools provided by RMF](http://integrativemodeling.org/rmf/nightly/doc/executables.html).""")
contents.append("*/")
tools.rewrite(name, "\n".join(contents))
def make_header(options):
dir = os.path.join("include", "IMP", options.name)
file = os.path.join(dir, "%s_config.h" % options.name)
header_template = open(
os.path.join(options.source, "tools", "build", "config_templates",
"header.h"), "r").read()
try:
os.makedirs(dir)
except:
# exists
pass
data = {}
data["name"] = options.name
data["filename"] = "IMP/%s/%s_config.h" % (options.name, options.name)
data["cppprefix"] = "IMP%s" % options.name.upper().replace("_", "")
if data["name"] != "base":
data["showable"] = """#if !defined(IMP_DOXYGEN) && !defined(SWIG)
#include <IMP/base/Showable.h>
#include <IMP/base/hash.h>
namespace IMP { namespace %(name)s {
using ::IMP::base::Showable;
using ::IMP::base::operator<<;
using ::IMP::base::hash_value;
} } // namespace
namespace IMP { namespace %(name)s { namespace internal {
using ::IMP::base::Showable;
using ::IMP::base::operator<<;
using ::IMP::base::hash_value;
} } } // namespace
#endif // !defined(SWIG) && !defined(IMP_DOXYGEN)
""" % data
else:
data["showable"] = ""
cppdefines = []
if options.defines != "":
for define in tools.split(options.defines):
parts = define.split("=")
if len(parts) == 2:
cppdefines.append("#define %s %s" % (parts[0], parts[1]))
else:
cppdefines.append("#define %s" % parts[0])
d = {
'required_modules': "",
'lib_only_required_modules': "",
'required_dependencies': "",
'optional_dependencies': ""
}
exec(
open(
os.path.join(options.source, "modules", data["name"],
"dependencies.py"), "r").read(), d)
info = tools.get_module_info(data["name"], options.datapath)
optional_modules = [
x for x in info["modules"]
if x not in tools.split(d['required_modules']) and x != ""
]
unfound_modules = [x for x in info["unfound_modules"] if x != ""]
optional_dependencies = [
x for x in info["dependencies"]
if x not in tools.split(d['required_dependencies']) and x != ""
]
unfound_dependencies = [x for x in info["unfound_dependencies"] if x != ""]
add_list_to_defines(cppdefines, data, "USE", 1,
["imp_" + x for x in optional_modules])
add_list_to_defines(cppdefines, data, "NO", 0,
["imp_" + x for x in unfound_modules])
add_list_to_defines(cppdefines, data, "USE", 1, optional_dependencies)
add_list_to_defines(cppdefines, data, "NO", 0,
info["unfound_dependencies"])
data["cppdefines"] = "\n".join(cppdefines)
tools.rewrite(file, header_template % data)
def build_wrapper(module, module_path, source, sorted, info, target, datapath):
info = tools.get_module_info(module, datapath)
if not info["ok"]:
return
contents = []
swig_module_name = "IMP" if module == 'kernel' else "IMP." + module
contents.append("""%%module(directors="1", allprotected="1") "%s"
%%feature("autodoc", 1);
// Warning 314: 'lambda' is a python keyword, renaming to '_lambda'
%%warnfilter(321,302,314);
%%{
#include <boost/version.hpp>
#if BOOST_VERSION > 103600
#if BOOST_VERSION > 103800
#include <boost/exception/all.hpp>
#else
#include <boost/exception.hpp>
#endif
#endif
#include <boost/type_traits/is_convertible.hpp>
#include <boost/utility/enable_if.hpp>
#include <exception>
#ifdef __cplusplus
extern "C"
#endif
// suppress warning
SWIGEXPORT
#if PY_VERSION_HEX >= 0x03000000
PyObject*
#else
void
#endif
SWIG_init();
%%}
""" % swig_module_name)
# some of the typemap code ends up before this is swig sees the
# typemaps first
all_deps = [x for x in tools.get_dependent_modules(
[module], datapath) if x != module]
for m in reversed(all_deps):
write_module_cpp(m, contents, datapath)
write_module_cpp(module, contents, datapath)
contents.append("""
%implicitconv;
%include "std_vector.i"
%include "std_string.i"
%include "std_pair.i"
%pythoncode %{
_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]
%}
%include "typemaps.i"
#ifdef NDEBUG
#error "The python wrappers must not be built with NDEBUG"
#endif
""")
for m in reversed(all_deps):
write_module_swig(m, source, contents, datapath)
write_module_swig(module, source, contents, datapath, True)
contents.append("%%include \"IMP_%s.impl.i\"" % module)
#contents.append(open(os.path.join(module_path, "pyext", "swig.i-in"), "r").read())
contents.append("""
namespace IMP { %s
const std::string get_module_version();
std::string get_example_path(std::string fname);
std::string get_data_path(std::string fname);
%s }
""" % ('' if module == 'kernel' else 'namespace %s {' % module,
'' if module == 'kernel' else '}'))
contents.append("""%pythoncode %{
from . import _version_check
_version_check.check_version(get_module_version())
__version__ = get_module_version()
%}
""")
g = tools.SWIGFileGenerator()
g.write(target, "\n".join(contents))
def build_wrapper(module, module_path, source, sorted, info, target, datapath):
info = tools.get_module_info(module, datapath)
if not info["ok"]:
return
contents = []
swig_module_name = "IMP." + module
contents.append("""%%module(directors="1", allprotected="1") "%s"
%%feature("autodoc", 1);
// Warning 314: 'lambda' is a python keyword, renaming to '_lambda'
%%warnfilter(321,302,314);
%%inline %%{
namespace IMP {
namespace kernel {
}
using namespace kernel;
}
%%}
%%{
#include <boost/version.hpp>
#if BOOST_VERSION > 103600
#if BOOST_VERSION > 103800
#include <boost/exception/all.hpp>
#else
#include <boost/exception.hpp>
#endif
#endif
#include <boost/type_traits/is_convertible.hpp>
#include <boost/utility/enable_if.hpp>
#include <exception>
#ifdef __cplusplus
extern "C"
#endif
// suppress warning
SWIGEXPORT
#if PY_VERSION_HEX >= 0x03000000
PyObject*
#else
void
#endif
SWIG_init();
%%}
""" % swig_module_name)
# some of the typemap code ends up before this is swig sees the
# typemaps first
all_deps = [
x for x in tools.get_dependent_modules([module], datapath)
if x != module
]
for m in reversed(all_deps):
write_module_cpp(m, contents, datapath)
write_module_cpp(module, contents, datapath)
contents.append("""
%implicitconv;
%include "std_vector.i"
%include "std_string.i"
%include "std_pair.i"
%pythoncode %{
_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]
%}
%include "typemaps.i"
#ifdef NDEBUG
#error "The python wrappers must not be built with NDEBUG"
#endif
""")
for m in reversed(all_deps):
write_module_swig(m, source, contents, datapath)
write_module_swig(module, source, contents, datapath, True)
contents.append("%%include \"IMP_%s.impl.i\"" % module)
#contents.append(open(os.path.join(module_path, "pyext", "swig.i-in"), "r").read())
contents.append("""
namespace IMP {
namespace %s {
const std::string get_module_version();
std::string get_example_path(std::string fname);
std::string get_data_path(std::string fname);
}
}
""" % module)
contents.append("""%pythoncode %{
import _version_check
_version_check.check_version(get_module_version())
%}
""")
tools.rewrite(target, "\n".join(contents))
def make_header(options):
dir = os.path.join("include", "IMP", options.name)
file = os.path.join(dir, "%s_config.h" % options.name)
header_template = open(
os.path.join(
options.source,
"tools",
"build",
"config_templates",
"header.h"),
"r").read(
)
try:
os.makedirs(dir)
except:
# exists
pass
data = {}
data["name"] = options.name
data["filename"] = "IMP/%s/%s_config.h" % (options.name, options.name)
data["cppprefix"] = "IMP%s" % options.name.upper().replace("_", "")
if data["name"] != "base":
data["showable"] = """#if !defined(IMP_DOXYGEN) && !defined(SWIG)
#include <IMP/base/Showable.h>
#include <IMP/base/hash.h>
namespace IMP { namespace %(name)s {
using ::IMP::base::Showable;
using ::IMP::base::operator<<;
using ::IMP::base::hash_value;
} } // namespace
namespace IMP { namespace %(name)s { namespace internal {
using ::IMP::base::Showable;
using ::IMP::base::operator<<;
using ::IMP::base::hash_value;
} } } // namespace
#endif // !defined(SWIG) && !defined(IMP_DOXYGEN)
""" % data
else:
data["showable"] = ""
cppdefines = []
if options.defines != "":
for define in tools.split(options.defines):
parts = define.split("=")
if len(parts) == 2:
cppdefines.append("#define %s %s" % (parts[0], parts[1]))
else:
cppdefines.append("#define %s" % parts[0])
d = {'required_modules': "", 'lib_only_required_modules': "",
'required_dependencies': "", 'optional_dependencies': ""}
exec(open(os.path.join(options.source, "modules", data["name"],
"dependencies.py"), "r").read(), d)
info = tools.get_module_info(data["name"], options.datapath)
optional_modules = [
x for x in info[
"modules"] if x not in tools.split(
d['required_modules']) and x != ""]
unfound_modules = [x for x in info["unfound_modules"] if x != ""]
optional_dependencies = [
x for x in info[
"dependencies"] if x not in tools.split(
d['required_dependencies']) and x != ""]
unfound_dependencies = [x for x in info["unfound_dependencies"] if x != ""]
add_list_to_defines(cppdefines, data, "USE", 1,
["imp_" + x for x in optional_modules])
add_list_to_defines(cppdefines, data, "NO", 0,
["imp_" + x for x in unfound_modules])
add_list_to_defines(cppdefines, data, "USE", 1, optional_dependencies)
add_list_to_defines(
cppdefines,
data,
"NO",
0,
info["unfound_dependencies"])
data["cppdefines"] = "\n".join(cppdefines)
tools.rewrite(file, header_template % data)
def build_wrapper(module, module_path, source, sorted, info, target, datapath):
info = tools.get_module_info(module, datapath)
if not info["ok"]:
return
contents=[]
swig_module_name="IMP."+module
contents.append("""%%module(directors="1", allprotected="1") "%s"
%%feature("autodoc", 1);
// turn off the warning as it mostly triggers on methods (and lots of them)
%%warnfilter(321);
%%inline %%{
namespace IMP {
namespace kernel {
}
using namespace kernel;
}
%%}
%%{
#include <boost/version.hpp>
#if BOOST_VERSION > 103600
#if BOOST_VERSION > 103800
#include <boost/exception/all.hpp>
#else
#include <boost/exception.hpp>
#endif
#endif
#include <boost/type_traits/is_convertible.hpp>
#include <boost/utility/enable_if.hpp>
#include <exception>
%%}
"""%swig_module_name)
# some of the typemap code ends up before this is swig sees the typemaps first
all_deps = [x for x in tools.get_dependent_modules([module], datapath) if x != module]
for m in reversed(all_deps):
write_module_cpp(m, contents, datapath)
write_module_cpp(module, contents, datapath)
contents.append("""
%implicitconv;
%include "std_vector.i"
%include "std_string.i"
%include "std_pair.i"
%pythoncode %{
_value_types=[]
_object_types=[]
_raii_types=[]
_plural_types=[]
%}
%include "typemaps.i"
#ifdef NDEBUG
#error "The python wrappers must not be built with NDEBUG"
#endif
""")
for m in reversed(all_deps):
write_module_swig(m, source, contents, datapath)
write_module_swig(module, source, contents, datapath, True)
contents.append("%%include \"IMP_%s.impl.i\""%module)
#contents.append(open(os.path.join(module_path, "pyext", "swig.i-in"), "r").read())
contents.append("""
namespace IMP {
namespace %s {
const std::string get_module_version();
std::string get_example_path(std::string fname);
std::string get_data_path(std::string fname);
}
}
"""%module)
contents.append("""%pythoncode %{
import _version_check
_version_check.check_version(get_module_version())
%}
""")
tools.rewrite(target, "\n".join(contents))