def forward(self, x: Tensor, edge_index: Adj) -> Tensor:
""""""
edge_weight: OptTensor = None
if isinstance(edge_index, Tensor):
num_nodes = x.size(self.node_dim)
if self.add_self_loops:
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
row, col = edge_index[0], edge_index[1]
deg_inv = 1. / degree(col, num_nodes=num_nodes).clamp_(1.)
edge_weight = deg_inv[col]
edge_weight[row == col] += self.diag_lambda * deg_inv
elif isinstance(edge_index, SparseTensor):
if self.add_self_loops:
edge_index = set_diag(edge_index)
col, row, _ = edge_index.coo() # Transposed.
deg_inv = 1. / sparsesum(edge_index, dim=1).clamp_(1.)
edge_weight = deg_inv[col]
edge_weight[row == col] += self.diag_lambda * deg_inv
edge_index = edge_index.set_value(edge_weight, layout='coo')
# propagate_type: (x: Tensor, edge_weight: OptTensor)
out = self.propagate(edge_index,
x=x,
edge_weight=edge_weight,
size=None)
out = self.lin_out(out) + self.lin_root(x)
return out
def forward(self, x: Union[OptTensor, PairOptTensor],
pos: Union[Tensor, PairTensor], edge_index: Adj) -> Tensor:
""""""
if not isinstance(x, tuple):
x: PairOptTensor = (x, None)
if isinstance(pos, Tensor):
pos: PairTensor = (pos, pos)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index,
num_nodes=min(
pos[0].size(0),
pos[1].size(0)))
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: PairOptTensor, pos: PairTensor)
out = self.propagate(edge_index, x=x, pos=pos, size=None)
if self.global_nn is not None:
out = self.global_nn(out)
return out
def forward(self, x, edge_index, size=None):
x_l = x_r = x
alpha_l = (x_l * self.att_l).sum(dim=-1)
alpha_r = (x_r * self.att_r).sum(dim=-1)
# print(alpha_l.shape)
# print(alpha_r.shape)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
if x_r is not None:
num_nodes = min(num_nodes, x_r.size(0))
if size is not None:
num_nodes = min(size[0], size[1])
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
_, col = edge_index[0], edge_index[1]
self.degree = degree(col)
theta = self.get_relu_coefs(x, edge_index)
self.theta = theta.view(-1, self.channels, 2 * self.k)
out = self.propagate(edge_index,
x=(x_l, x_r),
alpha=(alpha_l, alpha_r),
size=size)
return out
def forward(self, x: Union[Tensor, OptPairTensor], edge_index: Adj):
H, C = self.heads, self.out_channels
x = self.lin(x).view(-1, H, C)
alpha = (x * self.att).sum(dim=-1)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x.size(0)
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
out = self.propagate(edge_index, x=x,
alpha=alpha)
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
return out
def forward(
self,
x: Union[Tensor, PairTensor],
pos: Union[Tensor, PairTensor],
edge_index: Adj,
) -> Tensor:
""""""
if isinstance(x, Tensor):
alpha = (self.lin_src(x), self.lin_dst(x))
x: PairTensor = (self.lin(x), x)
else:
alpha = (self.lin_src(x[0]), self.lin_dst(x[1]))
x = (self.lin(x[0]), x[1])
if isinstance(pos, Tensor):
pos: PairTensor = (pos, pos)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index,
num_nodes=min(
pos[0].size(0),
pos[1].size(0)))
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: PairTensor, pos: PairTensor, alpha: PairTensor)
out = self.propagate(edge_index, x=x, pos=pos, alpha=alpha, size=None)
return out
def forward(self, x: Union[Tensor, OptPairTensor], edge_index: Adj,
size: Size = None, return_attention_weights=None):
r"""
Args:
return_attention_weights (bool, optional): If set to :obj:`True`,
will additionally return the tuple
:obj:`(edge_index, attention_weights)`, holding the computed
attention weights for each edge. (default: :obj:`None`)
"""
H, C = self.heads, self.out_channels
x_l: OptTensor = None
x_r: OptTensor = None
if isinstance(x, Tensor):
assert x.dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = x_r = self.lin_l(x).view(-1, H, C)
else:
x_l, x_r = x[0], x[1]
assert x[0].dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = self.lin_l(x_l).view(-1, H, C)
if x_r is not None:
x_r = self.lin_r(x_r).view(-1, H, C)
assert x_l is not None
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
if x_r is not None:
num_nodes = min(num_nodes, x_r.size(0))
if size is not None:
num_nodes = min(size[0], size[1])
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor)
out = self.propagate(edge_index, x=(x_l, x_r), size=size)
alpha = self._alpha
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
assert alpha is not None
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout='coo')
else:
return out
def forward(self, x: Union[Tensor, OptPairTensor], edge_index: Adj,
size: Size = None, return_attention_weights=None):
H, C = self.heads, self.out_channels
x_l: OptTensor = None
x_r: OptTensor = None
alpha_l: OptTensor = None
alpha_r: OptTensor = None
if isinstance(x, Tensor):
assert x.dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = x_r = x.view(-1, H, C)
alpha_l = (x_l*self.att_l).sum(dim=-1)
alpha_r = (x_r*self.att_r).sum(dim=-1)
else:
x_l, x_r = x[0], x[1]
assert x[0].dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = x_l.view(-1, H, C)
alpha_l = (x_l*self.att_l).sum(dim=-1)
if x_r is not None:
x_r = x_r.view(-1, H, C)
alpha_r = (x_r*self.att_r).sum(dim=-1)
assert x_l is not None
assert alpha_l is not None
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
if x_r is not None:
num_nodes = min(num_nodes, x_r.size(0))
if size is not None:
num_nodes = min(size[0], size[1])
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor)
out = self.propagate(edge_index, x=(x_l, x_r),
alpha=(alpha_l, alpha_r), size=size)
alpha = self._alpha
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if isinstance(return_attention_weights, bool):
assert alpha is not None
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout='coo')
else:
return out
def forward(self, x: Tensor, edge_index: Adj) -> Tensor:
""""""
if self.add_self_loops:
if isinstance(edge_index, Tensor):
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index,
num_nodes=x.size(self.node_dim))
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
x_norm = F.normalize(x, p=2., dim=-1)
# propagate_type: (x: Tensor, x_norm: Tensor)
return self.propagate(edge_index, x=x, x_norm=x_norm, size=None)
def forward(self,
x: Union[Tensor, PairTensor],
pos: Union[Tensor, PairTensor],
normal: Union[Tensor, PairTensor],
edge_index: Adj,
faces: Optional[Tensor] = None,
size: Optional[int] = None) -> Tensor:
""""""
# propagate_type: (x: PairTensor, edge_attr: Tensor) # noqa
if not isinstance(x, tuple):
x: PairTensor = (x, x)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index,
num_nodes=pos[1].size(0))
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
if self.use_edge_features:
# get edge features
if self.use_geodesic_distance:
edge_attr = edge_pair_features(edge_index,
pos,
normal,
faces=faces,
normalize_gd=self.normalize_gd)
else:
edge_attr = edge_pair_features(edge_index, pos, normal)
if self.edge_bn is not None:
edge_attr = self.edge_bn(edge_attr)
else:
edge_attr = None
# do message-passing
out = self.propagate(edge_index, x=x, edge_attr=edge_attr, size=None)
if self.weighted_average:
out = out[:, :-1] / (out[:, -1].view(-1, 1) + 1e-8)
if self.global_nn is not None:
#out = self.global_nn(torch.cat([x[0], out], dim=1))
out = self.global_nn(out)
return out
def forward(self, x: Tensor, edge_index: Adj,
edge_weight: OptTensor = None) -> Tensor:
if self.add_self_loops:
if isinstance(edge_index, Tensor):
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index,
num_nodes=x.size(self.node_dim))
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
x = self.lin(x)
# propagate_type: (x: Tensor, edge_weight: OptTensor)
out = self.propagate(edge_index, x=x, edge_weight=edge_weight,
size=None)
if self.bias is not None:
out += self.bias
return out
def forward(self,
x: Union[Tensor, OptPairTensor],
edge_index: Adj,
size: Size = None,
return_attention_weights=False):
# type: (Union[Tensor, OptPairTensor], Tensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], Tensor, Size, bool) -> Tuple[Tensor, Tuple[Tensor, Tensor]] # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, bool) -> Tuple[Tensor, SparseTensor] # noqa
r"""
Args:
return_attention_weights (bool, optional): If set to :obj:`True`,
will additionally return the tuple
:obj:`(edge_index, attention_weights)`, holding the computed
attention weights for each edge. (default: :obj:`None`)
"""
assert return_attention_weights == False, "Returning attention weights not supported. "
H, C = self.numheads, self.size_per_head
assert x.dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = x_r = self.lin(x).view(x.size(0), H, C)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
num_nodes = size[1] if size is not None else num_nodes
num_nodes = x_r.size(0) if x_r is not None else num_nodes
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor)
out = self.propagate(edge_index, x=(x_l, x_r), size=size)
out = out.view(-1, self.heads * self.size_per_head)
if self.bias is not None:
out += self.bias
return out
def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj) -> Tensor:
""""""
if isinstance(x, Tensor):
x: PairTensor = (x, x)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index,
num_nodes=x[1].size(0))
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: PairTensor)
out = self.propagate(edge_index, x=x, size=None)
if self.bias is not None:
out += self.bias
return out
def forward(self, x: Union[OptTensor, PairOptTensor],
pos: Union[Tensor, PairTensor],
normal: Union[Tensor, PairTensor],
edge_index: Adj) -> Tensor: # yapf: disable
""""""
if not isinstance(x, tuple):
x: PairOptTensor = (x, None)
if isinstance(pos, Tensor):
pos: PairTensor = (pos, pos)
if isinstance(normal, Tensor):
normal: PairTensor = (normal, normal)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index,
num_nodes=pos[1].size(0))
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: PairOptTensor, pos: PairTensor, normal: PairTensor) # noqa
out = self.propagate(edge_index,
x=x,
pos=pos,
normal=normal,
size=None)
s = out.size()
if self.normalize:
out = out / (out.sum(dim=-1).view(-1, s[1], 1) + self.eps)
if self.global_nn is not None:
# flatten histogram and perform transform
out = self.global_nn(out.view(-1, s[1] * s[2]))
return out
def forward(self,
x: Union[Tensor, OptPairTensor],
edge_index: Adj,
size: Size = None,
return_attention_weights=None):
# type: (Union[Tensor, OptPairTensor], Tensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], Tensor, Size, bool) -> Tuple[Tensor, Tuple[Tensor, Tensor]] # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, bool) -> Tuple[Tensor, SparseTensor] # noqa
r"""
Args:
return_attention_weights (bool, optional): If set to :obj:`True`,
will additionally return the tuple
:obj:`(edge_index, attention_weights)`, holding the computed
attention weights for each edge. (default: :obj:`None`)
"""
H, C = self.heads, self.out_channels
# We first transform the input node features. If a tuple is passed, we
# transform source and target node features via separate weights:
if isinstance(x, Tensor):
assert x.dim() == 2, "Static graphs not supported in 'GATConv'"
x_src = x_dst = self.lin_src(x).view(-1, H, C)
else: # Tuple of source and target node features:
x_src, x_dst = x
assert x_src.dim() == 2, "Static graphs not supported in 'GATConv'"
x_src = self.lin_src(x_src).view(-1, H, C)
if x_dst is not None:
x_dst = self.lin_dst(x_dst).view(-1, H, C)
x = (x_src, x_dst)
# Next, we compute node-level attention coefficients, both for source
# and target nodes (if present):
alpha_src = (x_src * self.att_src).sum(dim=-1)
alpha_dst = None if x_dst is None else (x_dst * self.att_dst).sum(-1)
alpha = (alpha_src, alpha_dst)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
# We only want to add self-loops for nodes that appear both as
# source and target nodes:
num_nodes = x_src.size(0)
if x_dst is not None:
num_nodes = min(num_nodes, x_dst.size(0))
num_nodes = min(size) if size is not None else num_nodes
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor)
out = self.propagate(edge_index, x=x, alpha=alpha, size=size)
alpha = self._alpha
assert alpha is not None
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout='coo')
else:
return out
def forward(
self,
x,
edge_index,
edge_weights: Optional[Tensor] = None,
size=None,
return_attention_weights=None,
):
"""Adapted from the PyTorch Geometric `GATConv` `forward` method. See PyTorch Geometric
for documentation.
"""
H, C = self.heads, self.out_channels
x_l = None
x_r = None
alpha_l = None
alpha_r = None
if isinstance(x, Tensor):
assert x.dim() == 2, "Static graphs not supported in `GATConv`."
x_l = x_r = self.lin_l(x).view(-1, H, C)
alpha_l = (x_l * self.att_l).sum(dim=-1)
alpha_r = (x_r * self.att_r).sum(dim=-1)
else:
x_l, x_r = x[0], x[1]
assert x[0].dim() == 2, "Static graphs not supported in `GATConv`."
x_l = self.lin_l(x_l).view(-1, H, C)
alpha_l = (x_l * self.att_l).sum(dim=-1)
if x_r is not None:
x_r = self.lin_r(x_r).view(-1, H, C)
alpha_r = (x_r * self.att_r).sum(dim=-1)
assert x_l is not None
assert alpha_l is not None
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
if x_r is not None:
num_nodes = min(num_nodes, x_r.size(0))
if size is not None:
num_nodes = min(size[0], size[1])
edge_index, edge_weights = remove_self_loops(
edge_index, edge_weights)
edge_index, edge_weights = add_self_loops(edge_index,
edge_weights,
num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor)
self.edge_weights = edge_weights
out = self.propagate(edge_index,
x=(x_l, x_r),
alpha=(alpha_l, alpha_r),
size=size)
alpha = self._alpha
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
assert alpha is not None
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout="coo")
else:
return out
def forward(self,
x: Union[Tensor, OptPairTensor],
edge_index: Adj,
edge_attr: OptTensor = None,
size: Size = None,
return_attention_weights=None):
# type: (Union[Tensor, OptPairTensor], Tensor, OptTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, OptTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], Tensor, OptTensor, Size, bool) -> Tuple[Tensor, Tuple[Tensor, Tensor]] # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, OptTensor, Size, bool) -> Tuple[Tensor, SparseTensor] # noqa
r"""
Args:
return_attention_weights (bool, optional): If set to :obj:`True`,
will additionally return the tuple
:obj:`(edge_index, attention_weights)`, holding the computed
attention weights for each edge. (default: :obj:`None`)
"""
# NOTE: attention weights will be returned whenever
# `return_attention_weights` is set to a value, regardless of its
# actual value (might be `True` or `False`). This is a current somewhat
# hacky workaround to allow for TorchScript support via the
# `torch.jit._overload` decorator, as we can only change the output
# arguments conditioned on type (`None` or `bool`), not based on its
# actual value.
H, C = self.heads, self.out_channels
# We first transform the input node features. If a tuple is passed, we
# transform source and target node features via separate weights:
if isinstance(x, Tensor):
assert x.dim() == 2, "Static graphs not supported in 'GATConv'"
x_src = x_dst = self.lin_src(x).view(-1, H, C)
else: # Tuple of source and target node features:
x_src, x_dst = x
assert x_src.dim() == 2, "Static graphs not supported in 'GATConv'"
x_src = self.lin_src(x_src).view(-1, H, C)
if x_dst is not None:
x_dst = self.lin_dst(x_dst).view(-1, H, C)
x = (x_src, x_dst)
# Next, we compute node-level attention coefficients, both for source
# and target nodes (if present):
alpha_src = (x_src * self.att_src).sum(dim=-1)
alpha_dst = None if x_dst is None else (x_dst * self.att_dst).sum(-1)
alpha = (alpha_src, alpha_dst)
if self.add_self_loops:
if isinstance(edge_index, Tensor):
# We only want to add self-loops for nodes that appear both as
# source and target nodes:
num_nodes = x_src.size(0)
if x_dst is not None:
num_nodes = min(num_nodes, x_dst.size(0))
num_nodes = min(size) if size is not None else num_nodes
edge_index, edge_attr = remove_self_loops(
edge_index, edge_attr)
edge_index, edge_attr = add_self_loops(
edge_index,
edge_attr,
fill_value=self.fill_value,
num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
if self.edge_dim is None:
edge_index = set_diag(edge_index)
else:
raise NotImplementedError(
"The usage of 'edge_attr' and 'add_self_loops' "
"simultaneously is currently not yet supported for "
"'edge_index' in a 'SparseTensor' form")
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor, edge_attr: OptTensor) # noqa
out = self.propagate(edge_index,
x=x,
alpha=alpha,
edge_attr=edge_attr,
size=size)
alpha = self._alpha
assert alpha is not None
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout='coo')
else:
return out
def forward(self, data, size=None, return_attention_weights=None):
"""
Args:
return_attention_weights (bool, optional): If set to 'True', will additionally return the
tuple (edge_index, attention_weights), holding the computed attention weights for each edge
"""
x, edge_index, edge_attr = data.x, data.edge_index, data.edge_attr
batch = data.batch
H, C = self.heads, self.out_channels
x_l: OptTensor = None
x_r: OptTensor = None
alpha_l: OptTensor = None # attention coefficients
alpha_r: OptTensor = None
# node linear transform
if isinstance(x, Tensor):
# assert x.dim == 2, "Static graphs not supported in 'EdgeGATConv'."
x_l = x_r = self.lin_l(x).view(-1, H, C)
alpha_l = alpha_r = (x_l * self.att_l).sum(dim=-1)
else:
x_l, x_r = x[0], x[1]
# assert x[0].dim == 2, "Static graphs not supported in 'EdgeGATConv'."
x_l = self.lin_l(x_l).view(-1, H, C)
alpha_l = (x_l * self.att_l).sum(dim=-1)
if x_r is not None:
x_r = self.lin_r(x_r).view(-1, H, C)
alpha_r = (x_r * self.att_r).sum(dim=-1)
assert x_l is not None
assert alpha_l is not None
# edge propagate
edge_attr = self.lin_edge1(edge_attr).view(-1, H, C)
edge_attr = self.edge_propagate(edge_index, edge_attr, x_l, size=size)
# add self loops
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
num_nodes = size[1] if size is not None else num_nodes
num_nodes = x_r.size(0) if x_r is not None else num_nodes
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# node propagate typeL (x: OptPairTensor, alpha: OptPairTensor)
out = self.propagate(edge_index,
x=(x_l, x_r),
alpha=(alpha_l, alpha_r),
size=size)
alpha = self._alpha
self._alpha = None
# mutil-head attention aggregation
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
assert alpha is not None
if isinstance(edge_index, Tensor):
return out, edge_attr, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_attr, edge_index.set_value(alpha,
layout='coo')
else:
return out, edge_attr
def forward(self,
x: Union[Tensor, OptPairTensor],
edge_index: Adj,
size: Size = None,
return_attention_weights=None,
layer=None):
# type: (Union[Tensor, OptPairTensor], Tensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], Tensor, Size, bool) -> Tuple[Tensor, Tuple[Tensor, Tensor]] # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, bool) -> Tuple[Tensor, SparseTensor] # noqa
r"""
Args:
return_attention_weights (bool, optional): If set to :obj:`True`,
will additionally return the tuple
:obj:`(edge_index, attention_weights)`, holding the computed
attention weights for each edge. (default: :obj:`None`)
"""
H, C = self.heads, self.out_channels
x_l: OptTensor = None
x_r: OptTensor = None
alpha_l: OptTensor = None
alpha_r: OptTensor = None
if isinstance(x, Tensor):
assert x.dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = x_r = self.lin_l(x).view(-1, H, C)
alpha_l = (x_l * self.att_l).sum(dim=-1)
alpha_r = (x_r * self.att_r).sum(dim=-1)
else:
x_l, x_r = x[0], x[1]
assert x[0].dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = self.lin_l(x_l).view(-1, H, C)
alpha_l = (x_l * self.att_l).sum(dim=-1)
if x_r is not None:
x_r = self.lin_r(x_r).view(-1, H, C)
alpha_r = (x_r * self.att_r).sum(dim=-1)
assert x_l is not None
assert alpha_l is not None
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
if x_r is not None:
num_nodes = min(num_nodes, x_r.size(0))
if size is not None:
num_nodes = min(size[0], size[1])
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor)
if layer != None and (layer > 1):
# propagate_type: (x: Tensor, edge_weight: OptTensor)
L = math.floor(self.out_channels / layer)
parts = []
for i in range(layer - 1):
parts.append(L)
parts.append(x_l.shape[-1] - L * (layer - 1))
parts = tuple(parts)
xl = x_l.split(parts, dim=-1)
xr = x_r.split(parts, dim=-1)
out = self.propagate(edge_index,
x=(xl[0], xr[0]),
alpha=(alpha_l, alpha_r),
size=size)
for i in range(1, layer):
out1 = self.propagate(edge_index,
x=(xl[i], xr[i]),
alpha=(alpha_l, alpha_r),
size=size)
out = torch.cat((out, out1), dim=-1)
else:
out = self.propagate(edge_index,
x=(x_l, x_r),
alpha=(alpha_l, alpha_r),
size=size)
alpha = self._alpha
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
assert alpha is not None
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout='coo')
else:
return out
def forward(self,
x: Union[Tensor, OptPairTensor],
edge_index: Adj,
size: Size = None,
return_attention_weights=None,
edge_weight=None):
# type: (Union[Tensor, OptPairTensor], Tensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], Tensor, Size, bool) -> Tuple[Tensor, Tuple[Tensor, Tensor]] # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, bool) -> Tuple[Tensor, SparseTensor] # noqa
r"""
Args:
return_attention_weights (bool, optional): If set to :obj:`True`,
will additionally return the tuple
:obj:`(edge_index, attention_weights)`, holding the computed
attention weights for each edge. (default: :obj:`None`)
"""
H, C = self.heads, self.out_channels
x_l: OptTensor = None
x_r: OptTensor = None
alpha_l: OptTensor = None
alpha_r: OptTensor = None
if isinstance(x, Tensor):
assert x.dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = x_r = self.lin_l(x).view(-1, H, C)
alpha_l = alpha_r = (x_l * self.att_l).sum(dim=-1)
else:
x_l, x_r = x[0], x[1]
assert x[0].dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = self.lin_l(x_l).view(-1, H, C)
alpha_l = (x_l * self.att_l).sum(dim=-1)
if x_r is not None:
x_r = self.lin_r(x_r).view(-1, H, C)
alpha_r = (x_r * self.att_r).sum(dim=-1)
assert x_l is not None
assert alpha_l is not None
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
num_nodes = size[1] if size is not None else num_nodes
num_nodes = x_r.size(0) if x_r is not None else num_nodes
edge_index, edge_weight = remove_self_loops(
edge_index, edge_attr=edge_weight)
edge_index, edge_weight = add_self_loops(
edge_index, edge_weight=edge_weight, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor)
# This is the modified part:
if edge_weight is None:
edge_weight = torch.ones((edge_index.size(1), ),
dtype=x.dtype,
device=edge_index.device)
out = self.propagate(edge_index,
x=(x_l, x_r),
alpha=(alpha_l, alpha_r),
size=size,
edge_weight=edge_weight)
alpha = self._alpha
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
assert alpha is not None
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout='coo')
else:
return out
def forward(self, x: Union[Tensor, PairTensor], edge_index: Adj,
edge_attr: OptTensor = None, size: Size = None,
return_attention_weights: bool = None):
# type: (Union[Tensor, PairTensor], Tensor, OptTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, PairTensor], SparseTensor, OptTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, PairTensor], Tensor, OptTensor, Size, bool) -> Tuple[Tensor, Tuple[Tensor, Tensor]] # noqa
# type: (Union[Tensor, PairTensor], SparseTensor, OptTensor, Size, bool) -> Tuple[Tensor, SparseTensor] # noqa
r"""
Args:
return_attention_weights (bool, optional): If set to :obj:`True`,
will additionally return the tuple
:obj:`(edge_index, attention_weights)`, holding the computed
attention weights for each edge. (default: :obj:`None`)
"""
H, C = self.heads, self.out_channels
x_l: OptTensor = None
x_r: OptTensor = None
if isinstance(x, Tensor):
assert x.dim() == 2
x_l = self.lin_l(x).view(-1, H, C)
if self.share_weights:
x_r = x_l
else:
x_r = self.lin_r(x).view(-1, H, C)
else:
x_l, x_r = x[0], x[1]
assert x[0].dim() == 2
x_l = self.lin_l(x_l).view(-1, H, C)
if x_r is not None:
x_r = self.lin_r(x_r).view(-1, H, C)
assert x_l is not None
assert x_r is not None
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
if x_r is not None:
num_nodes = min(num_nodes, x_r.size(0))
if size is not None:
num_nodes = min(size[0], size[1])
edge_index, edge_attr = remove_self_loops(
edge_index, edge_attr)
edge_index, edge_attr = add_self_loops(
edge_index, edge_attr, fill_value=self.fill_value,
num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
if self.edge_dim is None:
edge_index = set_diag(edge_index)
else:
raise NotImplementedError(
"The usage of 'edge_attr' and 'add_self_loops' "
"simultaneously is currently not yet supported for "
"'edge_index' in a 'SparseTensor' form")
# propagate_type: (x: PairTensor, edge_attr: OptTensor)
out = self.propagate(edge_index, x=(x_l, x_r), edge_attr=edge_attr,
size=size)
alpha = self._alpha
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
assert alpha is not None
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout='coo')
else:
return out
def forward(self,
x: Union[Tensor, OptPairTensor],
edge_index: Adj,
size: Size = None,
return_attention_weights=None):
# type: (Union[Tensor, OptPairTensor], Tensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, NoneType) -> Tensor # noqa
# type: (Union[Tensor, OptPairTensor], Tensor, Size, bool) -> Tuple[Tensor, Tuple[Tensor, Tensor]] # noqa
# type: (Union[Tensor, OptPairTensor], SparseTensor, Size, bool) -> Tuple[Tensor, SparseTensor] # noqa
r"""
Args:
return_attention_weights (bool, optional): If set to :obj:`True`,
will additionally return the tuple
:obj:`(edge_index, attention_weights)`, holding the computed
attention weights for each edge. (default: :obj:`None`)
"""
H, C = self.heads, self.out_channels
x_l: OptTensor = None
x_r: OptTensor = None
alpha_l: OptTensor = None
alpha_r: OptTensor = None
if isinstance(x, Tensor):
assert x.dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = x_r = self.lin_l(x).view(-1, H, C)
alpha_l = (x_l * self.att_l).sum(
dim=-1
) # (num_nodes, heads, out_channels) (1, heads, out_channels)
alpha_r = (x_r * self.att_r).sum(dim=-1)
if not self.gi_by_gcn:
alpha_gi = (x_r * self.global_importance_scorer).sum(dim=-1)
else:
x_l, x_r = x[0], x[1]
assert x[0].dim() == 2, 'Static graphs not supported in `GATConv`.'
x_l = self.lin_l(x_l).view(-1, H, C)
alpha_l = (x_l * self.att_l).sum(dim=-1)
if x_r is not None:
x_r = self.lin_r(x_r).view(-1, H, C)
alpha_r = (x_r * self.att_r).sum(dim=-1)
# if not self.gi_by_gcn:
# alpha_gi = (x_r * self.global_importance_scorer).sum(dim=-1)
assert x_l is not None
assert alpha_l is not None
if self.add_self_loops:
if isinstance(edge_index, Tensor):
num_nodes = x_l.size(0)
if x_r is not None:
num_nodes = min(num_nodes, x_r.size(0))
if size is not None:
num_nodes = min(size[0], size[1])
edge_index, _ = remove_self_loops(edge_index)
edge_index, _ = add_self_loops(edge_index, num_nodes=num_nodes)
elif isinstance(edge_index, SparseTensor):
edge_index = set_diag(edge_index)
if self.gi_by_gcn:
alpha_gi = self.global_importance_scorer(
x_r, edge_index) # num_nodes, num_heads
# A_ij + GI_j 因此GI 应当像alpha_j 一样扩展， 我在思考 alpha_i 和alpha_j 的得到方式是不是可以通过这个思路
# propagate_type: (x: OptPairTensor, alpha: OptPairTensor)
out = self.propagate(edge_index,
x=(x_l, x_r),
alpha=(alpha_l, alpha_r),
size=size) # base class 的propagate 调用了message()
alpha = self._alpha
self._alpha = None
if self.concat:
out = out.view(-1, self.heads * self.out_channels)
else:
out = out.mean(dim=1)
if self.bias is not None:
out += self.bias
if isinstance(return_attention_weights, bool):
assert alpha is not None
if isinstance(edge_index, Tensor):
return out, (edge_index, alpha)
elif isinstance(edge_index, SparseTensor):
return out, edge_index.set_value(alpha, layout='coo')
else:
return out