Ejemplo n.º 1
0
def _headMoveMeasure(A):
    lags = np.arange(0,24)
    i0 = 3
    C = tsstats.acf(A[:,i0], lags)
    Cm = C.min()
    Ct = tsstats.acf(A[:,-i0], lags)
    Cmt = Ct.min()
    return -(Cm-Cmt)
def s_acf(traj, maxMissing):
    sigma2 = ma.array([speedWithoutReversals(trajw).var()
                       for trajw in traj.asWindows(100.)
                       if fractionMissing(trajw)>maxMissing])
    C = ma.array([tsstats.acf(speedWithoutReversals(trajw), lags, exclude=trajw.excluded)
                  for trajw in traj.asWindows(100.)
                  if fractionMissing(trajw)>maxMissing])
    C[np.isnan(C)] = ma.masked
    C = (sigma2[:,np.newaxis]*C).mean(axis=0)
    if len(C) == 0:
        C = ma.zeros((len(lags),))
        C[:] = ma.masked
    return C
Ejemplo n.º 3
0
def s_acf(traj, maxMissing):
    sigma2 = ma.array([
        speedWithoutReversals(trajw).var() for trajw in traj.asWindows(100.)
        if fractionMissing(trajw) > maxMissing
    ])
    C = ma.array([
        tsstats.acf(speedWithoutReversals(trajw), lags, exclude=trajw.excluded)
        for trajw in traj.asWindows(100.)
        if fractionMissing(trajw) > maxMissing
    ])
    C[np.isnan(C)] = ma.masked
    C = (sigma2[:, np.newaxis] * C).mean(axis=0)
    if len(C) == 0:
        C = ma.zeros((len(lags), ))
        C[:] = ma.masked
    return C
Ejemplo n.º 4
0
 def plotACFComparison(self, t, y, tau,
                       dataStyle='k.',
                       theoryStyle='r-',
                       showPlot=True):
     dts = t[1:] - t[:-1]
     dt = dts[0]
     if not np.all(dts - dt < 1e-12):
         raise Exception('Time must be evenly sampled.')
     lags = np.round(tau/dt)
     Cdata = tsstats.acf(y, lags)
     plt.plot(lags*dt, Cdata, dataStyle)
     Ctheory = self.acf(tau)
     plt.plot(tau, Ctheory, theoryStyle)
     plt.xlabel(r'$\tau$ (s)')
     plt.ylabel(r'$\langle y(t) \cdot y(t+\tau) \rangle / \langle y(t) \cdot y(t) \rangle$')
     plt.ylim((-1, 1))
     plt.xlim((tau.min(), tau.max()))
     plt.grid(True)
     if showPlot:
         plt.show()