def __init__(me, io = None, timeout = 0.01) :
me.io = io
me.timeout = timeout
me.ibuf = ""
me.scnt = 1
me.rx_when = tzlib.elapsed_time() - 10000.0
me.data = [] # queue of a_recording's driven by data coming in from the device
if not me.io :
me.reopen()
pass
def read(me, how_many = 1, timeout = None) :
timeout = timeout or me.timeout
t = nt = tzlib.elapsed_time()
r = ""
while True :
rr = me.ibuf[:how_many]
me.ibuf = me.ibuf[how_many:]
how_many -= len(rr)
rc = len(rr)
r += rr
if not how_many :
break
rr = me.rx(how_many)
how_many -= len(rr)
rc += len(rr)
r += rr
if not how_many :
break
if rc :
t = nt
if nt - t >= timeout :
if len(r) :
break
raise a_cms50_timeout_exception("read")
nt = tzlib.elapsed_time()
if not rc :
time.sleep(min(0.1, timeout / 2.0))
pass
# print "rxing", len(r), "%04x" % ( len(r) ), hexify(r)
return(r)
def main(ident) :
import TZCommandLineAtFile
import TZKeyReady
try :
import tz_google_chart
import tz_browser
except ImportError :
tz_google_chart = None
if ident :
sys.argv.insert(1, ident)
sys.argv.insert(1, '--ident')
program_name = sys.argv.pop(0)
TZCommandLineAtFile.expand_at_sign_command_line_files(sys.argv)
ident = ""
port = 0 # my COM port, not yours
port_list = 0
verbose = 0
help_str = """
%s (options) (output_files_base_name)
I get the streaming data from a CMS50E Pulse Oximeter.
Options:
--port port_number Set the COM port number
--port_list List possible ports (twice, list all available ports)
--version Print the program version number.
""" % ( os.path.basename(program_name) )
oi = tzlib.array_find(sys.argv, [ "--help", "-?", "?", "-h", "/h", "/?", "?" ] )
if oi >= 0 :
print help_str
sys.exit(254)
while True :
oi = tzlib.array_find(sys.argv, [ "--ident", "-i" ] )
if oi < 0 : break
del sys.argv[oi]
if (oi >= len(sys.argv)) or not len(sys.argv[oi]) :
print "Program IDENT info not given!"
sys.exit(101)
ident = sys.argv.pop(oi)
while True :
oi = tzlib.array_find(sys.argv, [ "--version", "-v" ] )
if oi < 0 : break
del sys.argv[oi]
print "version", _program_version_str(ident)
if not sys.argv :
sys.exit(0)
pass
while True :
oi = tzlib.array_find(sys.argv, [ "--port", "-p" ] )
if oi < 0 : break
del sys.argv[oi]
if (oi >= len(sys.argv)) or not len(sys.argv[oi]) :
print "No COM port given!"
sys.exit(102)
port = sys.argv.pop(oi)
while True :
oi = tzlib.array_find(sys.argv, [ "--port_list" ] )
if oi < 0 : break
del sys.argv[oi]
port_list += 1
while True :
oi = tzlib.array_find(sys.argv, [ "--verbose" ] )
if oi < 0 : break
del sys.argv[oi]
verbose += 1
ofile_name = None
if len(sys.argv) >= 1 :
ofile_name = sys.argv.pop(0)
if ofile_name.startswith('-') :
print "Put the whole path or a dot/slash before the output file name. Dashes are confusing: [%s]" % ofile_name
sys.exit(104)
pass
if len(sys.argv) :
print "I don't understand %s (--help for options)!" % ( sys.argv )
sys.exit(104)
if port_list :
tz_usb.find_likely_COM_ports(vendor_id = USB_VENDOR_ID, product_id = USB_PRODUCT_ID, list_level = port_list)
if not port :
port = tz_usb.find_likely_COM_ports(vendor_id = USB_VENDOR_ID, product_id = USB_PRODUCT_ID)
if port :
print "Using port", port[0],
if len(port) > 1 :
print "Found ports", port,
print
port = port[0]
pass
if not port :
print "Please tell me a COM port to use with the --port option (e.g. --port 2 )!"
sys.exit(103)
try :
port = int(port)
cport = port - 1
except ValueError :
cport = port
try :
io = serial.Serial(port = cport, baudrate = 19200, parity = "O", timeout = 0.001) # note: PC program sets 8O1. serial.Serial() multiplies timeout by 1000 before passing to windows (This 1 mill is minimum for windows. I don't know about other OS's.)
except serial.SerialException :
print "Port %s [%s] cannot be opened!" % ( str(port), str(cport) )
sys.exit(111)
me = a_comm(io)
samples = a_recording()
if ofile_name :
if os.path.splitext(ofile_name)[1].lower() == ".csv" :
fo = output_files.a_file(ofile_name)
fo.write(a_full_sample.csv_header + "\n")
else :
fo = None
fn = get_output_file_name(ofile_name, program_name = program_name)
print "Outputting to: ", samples.open_write_file(fn)
pass
prg = a_progress_rtn()
stopped = 1000
finger = False
lay = []
mx = -10000
mn = 10000
msa = [ 64 ] * 300
mss = float(sum(msa))
ts = tzlib.elapsed_time()
rx_when = ts
png_drs = [ 7.5, 15.0, 30.0, 60.0, 120.0, 10 * 60.0, 15 * 60.0, 60 * 60.0, 2 * 60 * 60.0, 6 * 60 * 60.0, 12 * 60 * 60.0, ]
png_di = 0
sb = 0xf5
me.start_usb() # in case he's not turned it on (though we'll do this every half second of silence from the device, anyway
print "Type ? for help"
while True :
try :
s = me.read_sample(progress_rtn = prg.show_progress, verbose = verbose)
if s :
yy = s.y
if False :
msa.append(s.y)
mss += s.y
mss -= msa[0]
del(msa[0])
else :
mss = 64
if False :
yy = ((s.y) * ((s.bc & 0xf) + 1)) / 4.5 # tends to flatten out in the middle when there is a change to low amplitude waves
if False :
if yy < 0 :
yy = -math.log(-yy + math.e)
else :
yy = math.log( yy + math.e)
pass
pass
mx = max(mx, yy)
mn = min(mn, yy)
if s.ac & 3 :
print "@@@@ ac=%u" % s.ac
lay.append(s.ac)
if not finger :
samples.append(a_finger_sample(True))
samples.append(s)
if ofile_name :
if fo :
fo.write("%s\n" % s.csv_str())
samples.write_new_samples()
ys = (' ' * int((100.0 * (yy - mn)) / max(1.0, (mx - mn)))) + '*'
# avya = [ ox for ox in samples.samples[-5 * SAMPLE_RATE : ] if hasattr(ox, 'y') ]
# avy = sum([ ox.y for ox in avya ]) / float(max(1, len(avya)))
#dreamtcs might want to skip this
print ( s.print_str() ) # (100.0 * yy) / (yy + (s.bc & 0xf)), ys )
if not finger :
finger = True
samples.flush_file()
print "Finger"
stopped = max(stopped - 10, 0)
if len(samples.samples) > png_drs[-1] * SAMPLE_RATE * 2 :
samples.flush_file()
samples.forget_old_samples(png_drs[-1] * SAMPLE_RATE)
rx_when = tzlib.elapsed_time()
t = tzlib.elapsed_time()
if t - ts > 59 :
ts = t
samples.flush_file()
pass
except a_cms50_no_finger_exception :
if finger :
finger = False
samples.append(a_finger_sample(False))
print "No finger"
samples.flush_file()
pass
except a_cms50_data_exception, msg :
samples.flush_file()
print msg # those bits are not, apparently, dupes of each other
if not stopped :
sys.exit(199)
stopped -= 1
except ( a_cms50_exception, a_cms50_timeout_exception, ) :
t = tzlib.elapsed_time()
if t - rx_when > 0.5 :
rx_when = t
ts = t
mx = -10000
mn = 10000
samples.flush_file()
me.start_usb()
pass
def read_sample(me, progress_rtn = None, verbose = 0, mismatch_callback = None) :
s = None
try :
b = ord(me.read())
me.rx_when = tzlib.elapsed_time()
if b == 128 :
ba = [ b ]
t = me.rx_when
while (len(ba) < 5) and (t - me.rx_when < 0.1) :
t = tzlib.elapsed_time()
ba.append(ord(me.read()))
me.scnt += 1
if False and (ba[1] in [ 0, 0xff ]) : # 321390_Kanograf_(8400).pdf
if len(ba) == 5 :
print "@@@@ %02x:%02x:%02x:%02x:%02x" % ( ba[0], ba[1], ba[2], ba[3], ba[4] )
else :
print "@@@@", str(ba)
pass
raise a_cms50_no_finger_exception
if b < 128 :
# print "@@@@ toss read %02x" % b
pass
else :
y = ord(me.read())
ay = ord(me.read())
if (b == 0xf2) and (y & 0x80) :
me.ibuf = chr(b) + chr(y) + chr(ay) + me.ibuf
dt = me.read_upload(progress_rtn = progress_rtn, verbose = verbose)
if dt :
me.data.append(dt)
return(None)
hr = ord(me.read())
if (ay == 0xf2) and (hr & 0x80) :
me.ibuf = chr(ay) + chr(hr) + me.ibuf
dt = me.read_upload(progress_rtn = progress_rtn, verbose = verbose)
if dt :
me.data.append(dt)
return(None)
hr |= ((ay & 0x40) << 1)
ox = ord(me.read())
if ay & 0x80 :
# me.ibuf = chr(ay) + chr(hr) + chr(ox) + me.ibuf # note: the few times this has happened have not indicated that this is a good idea - nor that interpreting the ay|hr|ox bytes as uploaded data is a good idea
return(None) # punt as best we can
bc = (b & ~(64 | 128))
ac = ay >> 4
# print "@@@@ %02x" % b, hr, ox, me.scnt, y, ay, bc, ac
s = a_full_sample(hr, ox, me.scnt, y, ((b & 64) and True) or False, bc = bc, ac = ac & 3)
if (ay & 0x0f) != (y / 8) : # apparently, these 4 bits are a dupe of the top 4 or the 7 bits in "y" - let's force that to be so - crashes when device dumps memory
# print "@@@@ b=%02x ay & 0xf != y/8 ay:0x%02x != y:0x%02x" % ( b, ay, y ) # can happen if upload is starting
if mismatch_callback :
mismatch_callback(s, b, ay) # tell the caller this happened if he wants to know
s = None
me.scnt += 1
pass
except ( a_cms50_exception, a_cms50_timeout_exception, ) :
if tzlib.elapsed_time() - me.rx_when > 0.5 :
me.scnt = 1
raise
return(s)
while len(me.data) :
dt = me.data.pop(0)
# print "@@@@", len(dt.samples), len(dt.fd), "at", dt.tm / 3600, (dt.tm / 60) % 60
if len(dt.samples) :
fn = get_output_file_name(ofile_name, program_name = program_name, ext = ".dat")
# tzlib.write_whole_binary_file(fn, dt.fd)
dfn = dt.write_file(fn)
if not dfn :
print "Probably no data to write, so file not written."
else :
print "Wrote driven upload to", fn, "and", dfn, len(dt.samples)
pass
pass
mx = -10000
mn = 10000
ts = tzlib.elapsed_time()
stopped = 1000
k = TZKeyReady.key_ready()
if k :
print
if k in [ 'q', ] :
break
if k == '?' :
if tz_google_chart :
pcmd = ("""
p Write .png file showing graph to a file named like %s.
And write %s file with graphed data.
""" % ( get_output_file_name(ofile_name, program_name = program_name, ext = ".png"), a_recording.FILE_EXT, ) ).rstrip()
