def on_load_common_masses(self, e):
cmfilename = FileDialogs.open_file_dialog(
"Open Common Masses File",
file_types="*.csv*",
default=self.config.masstablefile)
if cmfilename is not None:
self.load_common_masses(cmfilename)
def auto(self, evt, file_path=None, filtered_lines=None):
if file_path is None and (filtered_lines is None or len(filtered_lines) <= 2):
file_path = FileDialogs.open_file_dialog("Open File", "*.csv")
filtered_lines = []
if file_path is not None:
# read in the comma-delimited import file
f = open(file_path, 'r')
lines = f.readlines()
f.close()
# strip lines beginning with # so can comment out lines
# strip blank lines
for line in lines:
if line.strip() is '' or line[0] is '#':
continue
filtered_lines.append(line)
if filtered_lines is not None and len(filtered_lines) > 2: # i.e. more than just hopefully the two header lines
t = threading.Thread(target=data_importer.auto_from_wizard, args=(filtered_lines, self.exedir))
t.start()
# gauge=ImporterProgressGauge.ProgressDialog()
# gauge.progress_dialog(self,"Importing raw file(s)","Importing file %s of %s, please wait..." % (1, len(filtered_lines) - 2),len(filtered_lines) - 2)
ImporterProgressGauge.progress_dialog(self, "Importing raw file(s)",
"Importing file %s of %s, please wait..." % (
1, len(filtered_lines) - 2), len(filtered_lines) - 2)
def import_file(self, evt=None, file_path=None):
if file_path is None:
file_path = FileDialogs.open_file_dialog("Open File", "*.csv")
if file_path is not None:
# read in the comma-delimited import file
f = open(file_path, 'r')
lines = f.readlines()
f.close()
type = lines[0].split(",")[1]
if type.lower() == "scans":
print("Type Scans:", type)
self.rb.SetSelection(1)
self.my_grid.EvtDriftType(1)
else:
print("Type Time:", type)
self.rb.SetSelection(0)
self.my_grid.EvtDriftType(0)
data = np.genfromtxt(file_path,
delimiter=",",
skip_header=2,
dtype=np.str)
print("Data:", data)
self.my_grid.load_data(data)
def on_load_conf_file(self, e=None):
"""
Opens a file dialog and then imports a new _conf.dat config file
:param e: unused space for event
:return: None
"""
cfilename = FileDialogs.open_file_dialog("Open Configuration File (_conf.dat)", file_types="*.*")
if cfilename is not None:
self.import_config(cfilename)
pass
def on_import_masses(self, e):
"""
Opens a dialog to import mass list files.
:param e: Unused event
:return: None
"""
mfilename = FileDialogs.open_file_dialog(
"Open Text File with List of Mass Defects", file_types="*.*")
if mfilename is not None:
importmass = np.loadtxt(mfilename)
self.masslistbox.list.populate(importmass)
def on_import_masses(self, e):
"""
Opens a dialog to import mass list files.
:param e: Unused event
:return: None
"""
mfilename = FileDialogs.open_file_dialog("Open Mass File (mfile)",
file_types="*.*")
if mfilename is not None:
importmass = np.loadtxt(mfilename)
if importmass[0] > 0:
self.masslistbox.list.populate(importmass)
def on_import_oligos(self, e):
"""
Open a file dialog to import oligomer files.
:param e: Unused event
:return: None
"""
# TODO: This fails when the output ofile isn't square (some are unnamed and other are named)
ofilename = FileDialogs.open_file_dialog("Open Oligomer File (ofile)",
file_types="*.*")
if ofilename is not None:
importolig = np.genfromtxt(ofilename, dtype='str')
if np.shape(importolig) == (5, ) or np.shape(importolig) == (4, ):
importolig = [importolig]
self.oligomerlistbox.list.populate(importolig)
def on_import(self, e):
"""
Open a file dialog and import a N x 3 (MS) or N x 5 (IMMS) array of manual assignment.
Add the array to the listctrl.
:param e: Unused event
:return: None
"""
import_file_name = FileDialogs.open_file_dialog("Open File",
file_types="*.*")
if import_file_name is not None:
importtrunc = np.loadtxt(import_file_name)
if self.config.imflag == 0:
if importtrunc.shape == (3, ):
importtrunc = [importtrunc]
if len(importtrunc[0]) == 3:
self.masslistbox.list.populate(importtrunc)
# print importtrunc
else:
if importtrunc.shape == (5, ):
importtrunc = [importtrunc]
if len(importtrunc[0]) == 5:
self.masslistbox.list.populate(importtrunc)
