def get_app():
#app = Flask(__name__)
app = Flask('pyfem')
app.config.from_object(Config)
# set environment PYFEM_SETTINGS=testing_settings to automatically use a -test version of db
if os.environ.get('PYFEM_SETTINGS'):
if os.environ['PYFEM_SETTINGS'] == 'testing_settings':
app.config['MONGODB_SETTINGS'] = dict(db=app.config['MONGO_DBNAME'] + '-test')
app.secret_key = app.config['SECRET_KEY']
app.me = MongoEngine(app)
app.pymongo = _get_db()
# app.jinja_env.add_extension('util.Markdown2Extension')
# app.jinja_env.filters['slugify'] = slugify
# app.jinja_env.filters['timesince'] = timesince
# app.jinja_env.filters['timeuntil'] = timeuntil
# app.jinja_env.filters['jsonencode'] = jsonencode
# app.jinja_env.globals['newrelic_head'] = newrelic_head
# app.jinja_env.globals['newrelic_foot'] = newrelic_foot
# if not app.config.get('TEMPLATE_DEBUG', True):
# compiled_templates = os.path.join(os.path.abspath(os.path.dirname(__file__)), 'compiled_templates')
# compiled_files = path.path(compiled_templates).files()
# if len(compiled_files) <= 1:
# app.jinja_env.compile_templates(compiled_templates, zip=None, py_compile=True)
# app.jinja_env.loader = ModuleLoader(compiled_templates)
configure_logging(app)
return app
def main():
"""
Main function - configures and runs the plugin.
"""
# Read the network config file from stdin.
config_raw = ''.join(sys.stdin.readlines()).replace('\n', '')
network_config = json.loads(config_raw).copy()
# Get the log level from the config file, default to INFO.
log_level = network_config.get(LOG_LEVEL_KEY, "INFO").upper()
# Configure logging.
configure_logging(_log, LOG_FILENAME, log_level=log_level)
_log.debug("Loaded network config:\n%s",
json.dumps(network_config, indent=2))
# Get the etcd authority from the config file. Set the
# environment variable.
etcd_authority = network_config.get(ETCD_AUTHORITY_KEY,
DEFAULT_ETCD_AUTHORITY)
os.environ[ETCD_AUTHORITY_ENV] = etcd_authority
_log.debug("Using ETCD_AUTHORITY=%s", etcd_authority)
# Get the CNI environment.
env = os.environ.copy()
_log.debug("Loaded environment:\n%s", json.dumps(env, indent=2))
# Create the plugin, passing in the network config, environment,
# and the Calico configuration options.
plugin = CniPlugin(network_config, env)
# Call the CNI plugin.
sys.exit(plugin.execute())
def main():
"""
Main function - configures and runs the plugin.
"""
# Read the network config file from stdin.
config_raw = ''.join(sys.stdin.readlines()).replace('\n', '')
network_config = json.loads(config_raw).copy()
# Get the log level from the config file, default to INFO.
log_level = network_config.get(LOG_LEVEL_KEY, "INFO").upper()
# Configure logging.
configure_logging(_log, LOG_FILENAME, log_level=log_level)
_log.debug("Loaded network config:\n%s",
json.dumps(network_config, indent=2))
# Get the etcd authority from the config file. Set the
# environment variable.
etcd_authority = network_config.get(ETCD_AUTHORITY_KEY,
DEFAULT_ETCD_AUTHORITY)
os.environ[ETCD_AUTHORITY_ENV] = etcd_authority
_log.debug("Using ETCD_AUTHORITY=%s", etcd_authority)
# Get the CNI environment.
env = os.environ.copy()
_log.debug("Loaded environment:\n%s", json.dumps(env, indent=2))
# Create the plugin, passing in the network config, environment,
# and the Calico configuration options.
plugin = CniPlugin(network_config, env)
# Call the CNI plugin.
sys.exit(plugin.execute())
def main():
# Read config file from stdin.
_log.debug("Reading config from stdin")
conf_raw = ''.join(sys.stdin.readlines()).replace('\n', '')
config = json.loads(conf_raw)
# Get the log level from the config file, default to INFO.
log_level = config.get(LOG_LEVEL_KEY, "INFO").upper()
# Setup logger. We log to file and to stderr based on the
# log level provided in the network configuration file.
configure_logging(_log, LOG_FILENAME,
log_level=log_level,
stderr_level=logging.INFO)
# Get copy of environment.
env = os.environ.copy()
# Create plugin instance.
plugin = IpamPlugin(config, env)
try:
# Execute IPAM.
plugin.execute()
except Exception, e:
_log.exception("Unhandled exception")
_exit_on_error(ERR_CODE_UNHANDLED,
message="Unhandled Exception",
details=e.message)
def main(argv):
# set up logging
util.create_dir("logs")
util.configure_logging("gzip", "logs/gzip.log")
# check args
if len(argv) != 4:
print "Usage: {} <c/d> <source> <target>".format(argv[0])
return -1
# check if first argument is valid
if argv[1] != "c" and argv[1] != "d":
logging.error("First argument %s should be 'c' or 'd'", repr(argv[1]))
return -1
# check if files do (not) exist
source = argv[2]
target = argv[3]
if not os.path.isfile(source):
logging.error("Source %s does not exist", repr(source))
return -1
if os.path.isfile(target) and os.path.getsize(target) > 0:
logging.error("Target %s already exists and is non-empty",
repr(target))
return -1
# compress/decompress
if argv[1] == "c":
compress(source, target)
else:
decompress(source, target)
return 0
def main() -> int:
util.configure_logging()
cfg = parse_args_to_config()
if cfg.is_source_package:
version = None
else:
versions = repos.get_all_versions(
os.path.join(cfg.source_dir, 'versions.yml'))
if cfg.revision not in versions:
logging.error('Invalid revision %s', cfg.revision)
return 1
version = versions[cfg.revision]
try:
if (cfg.host_toolchain.kind == config.ToolchainKind.MINGW
and cfg.ask_copy_runtime_dlls):
res = ask_about_runtime_dlls(cfg)
if res is None:
return 1
cfg.copy_runtime_dlls = res
if not cfg.skip_checks:
check.check_prerequisites(cfg)
def do_prepare_repositories():
assert version is not None
prepare_repositories(cfg, version)
run_or_skip(cfg, Action.PREPARE, do_prepare_repositories,
'source code checkout')
build_all(cfg)
run_tests(cfg)
def do_source_package():
version.poplulate_commits(cfg.repos_dir)
package.create_source_package(cfg, version)
run_or_skip(cfg, Action.PACKAGE_SRC, do_source_package,
'source package')
def do_binary_package():
if version is not None:
version.poplulate_commits(cfg.repos_dir)
package.create_binary_package(cfg, version)
run_or_skip(cfg, Action.PACKAGE, do_binary_package, 'binary package')
except util.ToolchainBuildError:
# By this time the error must have already been logged
return 1
except KeyboardInterrupt:
sys.stdout.write('\n')
logging.info('Build interrupted by user')
return 1
return 0
def __init__(self, methodName='runTest'):
super().__init__(methodName)
util.configure_logging()
self.A = np.array([[1, 1, 0, 0, 1, 0], [1, 0, 1, 0, 1, 0],
[0, 1, 0, 1, 0, 0], [0, 0, 1, 0, 1, 1],
[1, 1, 0, 1, 0, 0], [0, 0, 0, 1, 0, 0]])
self.D = np.array([[3, 0, 0, 0, 0, 0], [0, 3, 0, 0, 0, 0],
[0, 0, 2, 0, 0, 0], [0, 0, 0, 3, 0, 0],
[0, 0, 0, 0, 3, 0], [0, 0, 0, 0, 0, 1]])
self.L = np.array([[2, -1, 0, 0, -1, 0], [-1, 3, -1, 0, -1, 0],
[0, -1, 2, -1, 0, 0], [0, 0, -1, 3, -1, -1],
[-1, -1, 0, -1, 3, 0], [0, 0, 0, -1, 0, 1]])
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
util.configure_logging()
self.etalon = {
'news_2cl_1': (97.5, 0.95, 97.8, 0.96, 91.8, 0.85, 94.5, 0.90),
'news_2cl_2': (90.6, 0.83, 91.5, 0.84, 81.5, 0.70, 93.0, 0.87),
'news_2cl_3': (95.5, 0.91, 96.0, 0.92, 94.8, 0.90, 95.7, 0.92),
'news_3cl_1': (93.9, 0.91, 94.5, 0.92, 89.2, 0.85, 92.7, 0.90),
'news_3cl_2': (93.6, 0.91, 93.5, 0.91, 86.7, 0.82, 92.0, 0.89),
'news_3cl_3': (93.9, 0.91, 92.8, 0.90, 87.4, 0.83, 81.7, 0.78),
'news_5cl_1': (83.0, 0.80, 85.4, 0.83, 80.4, 0.79, 76.7, 0.78),
'news_5cl_2': (74.8, 0.77, 78.4, 0.79, 64.4, 0.69, 67.7, 0.72),
'news_5cl_3': (76.4, 0.75, 80.1, 0.79, 64.9, 0.69, 64.0, 0.72),
}
def main():
BUCKET_NAME = 'sandbox-226501-mlengine'
logger = configure_logging()
logger.info("caching data from GCP bucket...")
cache_training_data(BUCKET_NAME,
train_filename="titanic_training_split.csv",
val_filename="titanic_val_split.csv",
train_cache_name="titanic_train_temp.csv",
val_cache_name="titanic_val_temp.csv")
data = load_data()
logger.info("loaded data into dataframes")
model = build_model()
logger.info("loaded model")
logger.info("beginning model fit")
model.fit(data['X_train'], data['y_train'])
logger.info("model has been fit")
y_hat = model.predict_proba(data['X_val'])[:, 1]
score = roc_auc_score(data['y_val'], y_hat)
logger.info(" Model AUC:{}".format(score))
save_model_to_cloud(model, BUCKET_NAME)
logger.info("model saved to GCP")
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
util.configure_logging()
self.etalon = { # CCT, FE, logFor, RSP, SCT, SP
'football': (0.7928, 0.9061, 0.9028, 0.9092, 0.8115, 0.8575),
'news_2cl_1': (0.7944, 0.8050, 0.8381, 0.7966, 0.8174, 0.6540),
'news_2cl_2': (0.5819, 0.5909, 0.5844, 0.5797, 0.5523, 0.5159),
'news_2cl_3': (0.7577, 0.8107, 0.7482, 0.7962, 0.7857, 0.8592),
'news_3cl_1': (0.7785, 0.7810, 0.7530, 0.7810, 0.7730, 0.7426),
'news_3cl_2': (0.7616, 0.7968, 0.7585, 0.7761, 0.7282, 0.6246),
'news_3cl_3': (0.7455, 0.7707, 0.7487, 0.7300, 0.7627, 0.7203),
'news_5cl_1': (0.6701, 0.6922, 0.6143, 0.7078, 0.6658, 0.6815),
'news_5cl_2': (0.6177, 0.6401, 0.5977, 0.6243, 0.6154, 0.5970),
'news_5cl_3': (0.6269, 0.6065, 0.5729, 0.5750, 0.5712, 0.4801),
'polblogs': (0.5525, 0.5813, 0.5811, 0.5815, 0.5757, 0.5605),
'zachary': (1.0000, 1.0000, 1.0000, 1.0000, 1.0000, 1.0000)
}
def main():
# cli args checking
parser = argparse.ArgumentParser()
subparsers = parser.add_subparsers(dest="action")
parser_c = subparsers.add_parser("c")
parser_c.add_argument("source", type=str)
parser_c.add_argument("target", type=str)
parser_c.add_argument("reference", type=str)
parser_c.add_argument("--inner", type=str)
parser_c.add_argument("--delta", type=str)
parser_c.add_argument("--nointra", action="store_true")
parser_d = subparsers.add_parser("d")
parser_d.add_argument("source", type=str)
parser_d.add_argument("target", type=str)
args = parser.parse_args()
# create method name
if args.action == "c":
method = create_method_name(args.nointra, args.delta, args.inner)
elif args.action == "d":
with open(args.source, "rb") as f:
method = util.parse_header(f)[1]
# set up logging
util.create_dir("logs")
util.configure_logging(method, "logs/{}.log".format(method))
# check if files do (not) exist
if not os.path.isfile(args.source):
logging.error("Source %s does not exist", repr(args.source))
return -1
if os.path.isfile(args.target) and os.path.getsize(args.target) > 0:
logging.error("Target %s already exists and is non-empty",
repr(args.target))
return -1
if args.action == "c" and not os.path.isfile(args.reference):
logging.error("Reference %s does not exist", repr(args.reference))
return -1
# compress/decompress
if args.action == "c":
return compress(args.source, args.target, args.reference, args.nointra,
args.delta, args.inner)
elif args.action == "d":
return decompress(args.source, args.target)
def main():
conf = Config("rs-issue")
conf.add_option("-l", "--limit", dest="limit", action="store", type="int", help="number of results to return.")
conf.add_option("-o", "--offset", dest="offset", action="store", type="int", help="skip this number of records.")
conf.add_option("-s", "--sort", dest="sort", action="store", help="sort the results on column.")
conf.add_option("--status-id", dest="qs_status_id", help="the name of the status state, e.g. closed.")
conf.add_option("--project-id", dest="qs_project_id", help="the name of the project e.g. rc-support.")
conf.add_option("--tracker-id", dest="qs_tracker_id", help="the name of the tracker e.g. support.")
opts, args = conf.parse_args()
# Here would be a good place to check what came in on the command
# line and call optp.error("Useful message") to exit if all it not
# well.
util.configure_logging(opts.verbose)
query = {}
for qs in dir(opts):
if qs.startswith("qs_"):
name = qs[3:]
query[name] = getattr(opts, qs)
client = IssueClient(opts.url, opts.api_key)
result = client.query(query)
from prettytable import PrettyTable
x = PrettyTable(field_names=["ID", "Tracker", "Status", "Priority", "Title", "Assigned To"])
for row in result["issues"]:
if "assigned_to" in row:
assigned_to = row["assigned_to"]["name"]
else:
assigned_to = ""
x.add_row(
[
row["id"],
row["tracker"]["name"],
row["status"]["name"],
row["priority"]["name"],
row["subject"],
assigned_to,
]
)
print str(x)
def main() -> int:
util.configure_logging()
cfg = parse_args_to_config()
versions = repos.get_all_versions(
os.path.join(cfg.source_dir, 'versions.yml'))
if cfg.revision not in versions:
logging.error('Invalid revision %s', cfg.revision)
return 1
try:
if (cfg.host_toolchain.kind == config.ToolchainKind.MINGW
and cfg.ask_copy_runtime_dlls):
res = ask_about_runtime_dlls(cfg)
if res is None:
return 1
cfg.copy_runtime_dlls = res
if not cfg.skip_checks:
check.check_prerequisites(cfg)
run_or_skip(cfg, Action.PREPARE,
lambda: prepare_repositories(cfg, versions[cfg.revision]),
'source code checkout')
build_all(cfg)
run_tests(cfg)
def do_package():
tarball.write_version_file(cfg)
tarball.package_toolchain(cfg)
run_or_skip(cfg, Action.PACKAGE, do_package, 'packaging')
except util.ToolchainBuildError:
# By this time the error must have already been logged
return 1
except KeyboardInterrupt:
sys.stdout.write('\n')
logging.info('Build interrupted by user')
return 1
return 0
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
util.configure_logging()
self.graph = sample.triangle_graph
def main():
util.configure_logging()
parser = argparse.ArgumentParser(
description='Manage LLVM Embedded Toolchain for Arm checkout',
formatter_class=argparse.RawDescriptionHelpFormatter,
epilog='\n'
'Actions:\n'
' list list available versions.\n'
' status report the status of each checkout.\n'
' check check the state of each checkout matches the '
'requested toolchain revision\n'
' clone checkout each repository as needed for the '
'requested toolchain revision\n'
' freeze print a YAML description of the current '
'repositories state\n')
parser.add_argument('-v',
'--verbose',
action='store_true',
help='Increase verbosity level.')
parser.add_argument('-r',
'--revision',
metavar='version',
default='HEAD',
help='Select the toolchain version to use.')
parser.add_argument('--patches',
metavar='DIR',
default='patches',
help='Select where the patch files are checked out.')
parser.add_argument('--repositories',
metavar='DIR',
default='repos',
help='Select where the modules are checked out.')
parser.add_argument(
'--versions',
metavar='FILE',
default='versions.yml',
help='Select the database of available toolchain reversions.')
parser.add_argument('action',
nargs=1,
choices=['list', 'status', 'check', 'clone', 'freeze'],
help='Action to perform')
args = parser.parse_args()
args.action = args.action[0]
ret_val = 0
if args.action == 'status':
ret_val = print_repositories_status(args.repositories)
sys.exit(ret_val)
elif args.action == 'freeze':
ret_val = freeze_repositories(args.repositories, args.revision)
sys.exit(ret_val)
versions = get_all_versions(args.versions)
# Make sure the requested version actually exists
if args.revision not in versions:
die('revision "{}" is unknown'.format(args.revision))
if args.action == 'list':
ret_val = print_versions(versions, args.verbose)
elif args.action == 'check':
ret_val = check_repositories_status(args.repositories,
versions[args.revision])
elif args.action == 'clone':
ret_val = clone_repositories(args.repositories,
versions[args.revision], args.patches)
else:
die('unsupported command: "{}"'.format(args.action))
sys.exit(ret_val)
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
self.graph = sample.chain_graph
util.configure_logging()
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
util.configure_logging()
self.graph = sample.diploma_matrix
make_response,
redirect,
render_template,
request,
url_for,
)
from flask_oidc import OpenIDConnect
from okta import UsersClient
from dotenv import load_dotenv
from util import (generate_secrets_json, authorize, configure_logging,
format_json, parse_jwt_payload, get_data, is_premium_user)
load_dotenv()
generate_secrets_json()
configure_logging()
DEFAULT_SCOPES = ['openid', 'email', 'profile', 'promos:read']
app = Flask(__name__)
app.config['DEBUG'] = True
app.config['OIDC_CLIENT_SECRETS'] = 'client_secrets.json'
app.config['OIDC_COOKIE_SECURE'] = False
app.config['OIDC_CALLBACK_ROUTE'] = '/oidc/callback'
app.config['OIDC_SCOPES'] = DEFAULT_SCOPES
app.config['SECRET_KEY'] = environ.get('SECRET_KEY')
app.config['OIDC_ID_TOKEN_COOKIE_NAME'] = 'id_token'
oidc = OpenIDConnect(app)
okta_client = UsersClient(environ.get('OKTA_ORG_URL'),
environ.get('OKTA_API_TOKEN'))
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
util.configure_logging()
graph, info = dataset.news_2cl_1
self.graph, self.y_true = graph[0]
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
util.configure_logging()
def __init__(self, *args, **kwargs):
super().__init__(*args, **kwargs)
util.configure_logging()
self.get_CT = lambda A: SPCT(A).get_D(0)
self.get_SP = lambda A: SPCT(A).get_D(1)
import logging
import os
from util import configure_logging
from docker import Client
from docker.errors import APIError
# Docker config.
DOCKER_HOST_ENV = "DOCKER_HOST"
DOCKER_SOCKET = "unix://var/run/docker.sock"
DOCKER_VERSION = "1.16"
LOG_FILENAME = "cni.log"
_log = logging.getLogger(__name__)
configure_logging(_log, LOG_FILENAME)
class BaseContainerEngine(object):
"""
Abstract base class for interacting with containerizers.
"""
def uses_host_networking(self, container_id):
"""
Whether or not this container is networking using host
networking.
"""
raise NotImplementedError()
class DefaultEngine(BaseContainerEngine):
def __init__(self, *args, **kwargs):
super().__init__(0.002, *args, **kwargs) # error bars in paper: 0.002
util.configure_logging()
DOTFILES_ROOT = os.path.dirname(os.path.realpath(__file__))
SUBMODULES = os.path.join(DOTFILES_ROOT, 'submodules')
COMPILED = os.path.join(DOTFILES_ROOT, 'compiled')
try:
from pathlib import Path
except ImportError:
from pathlib2 import Path
try:
from bunch import Bunch
except ImportError:
from ecn.util.bunch import Bunch
log = configure_logging()
def get_host():
hostfile = Path.home() / '.config' / 'build_target'
with open(str(hostfile)) as fl:
return fl.readlines()[0].rstrip()
def get_task():
host = Host(get_host())
return Bunch(
host=host,
targets=CONFIGS[host],
)
def __init__(self, atol, *args, **kwargs):
super().__init__(*args, **kwargs)
util.configure_logging()
self.atol = atol
self.n_params = 200
import logging
import os
from util import configure_logging
from docker import Client
from docker.errors import APIError
# Docker config.
DOCKER_HOST_ENV = "DOCKER_HOST"
DOCKER_SOCKET = "unix://var/run/docker.sock"
DOCKER_VERSION = "1.16"
LOG_FILENAME = "cni.log"
_log = logging.getLogger(__name__)
configure_logging(_log, LOG_FILENAME)
class BaseContainerEngine(object):
"""
Abstract base class for interacting with containerizers.
"""
def uses_host_networking(self, container_id):
"""
Whether or not this container is networking using host
networking.
"""
raise NotImplementedError()
class DefaultEngine(BaseContainerEngine):
"""