def create_h5_data(input_dir, output_path, train_yaml, model_yaml):
"""
#TODO be careful if you change of normalization
Args:
input_dir: For all npy tile in a directory, save them with the normalization parameter into a .hpy5 format
output_path: For all npy tile in a directory, save them with the normalization parameter into a .hpy5 format
train_yaml: For all npy tile in a directory, save them with the normalization parameter into a .hpy5 format
model_yaml: For all npy tile in a directory, save them with the normalization parameter into a .hpy5 format
Returns:
"""
data_X, data_y, scale_dict_train = load_data(
input_dir,
x_shape=model_yaml["input_shape"],
label_shape=model_yaml["dim_gt_image"],
normalization=train_yaml["normalization"],
dict_band_X=train_yaml["dict_band_x"],
dict_band_label=train_yaml["dict_band_label"],
dict_rescale_type=train_yaml["dict_rescale_type"],
fact_s2=train_yaml["s2_scale"],
fact_s1=train_yaml["s1_scale"],
s2_bands=train_yaml["s2bands"],
s1_bands=train_yaml["s1bands"],
lim=train_yaml["lim_train_tile"])
hf = h5py.File(output_path, 'w')
hf.create_dataset('data_X', data=data_X)
hf.create_dataset('data_y', data=data_y)
hf.close()
return output_path
def main(test_name, dataset_dir, input_dataset):
print("[INFO] test {} is going to be runned".format(test_name))
if test_name == "read_csv_stats":
tile_id = extract_tile_id(
find_image_indir(input_dataset + XDIR, "npy")[0])
path_csv = find_csv(dataset_dir, "B2")
val_min, val_max = get_minmax_fromcsv(
tile_id.split(".")[0] + ".tif", path_csv, "B2")
print("TEST for image {} the min_max from csv is {}".format(
tile_id, (val_min, val_max)))
print("load_from_dir function")
data_array, path_tile, ldict_stat = load_from_dir(
input_dataset + XDIR, DICT_SHAPE[XDIR])
assert ldict_stat is not None, "Wrong output should be a list"
assert type(ldict_stat) == type(
[]), "The ouput of the function should be a list not {}".format(
type(ldict_stat))
assert data_array.shape[0] == len(
ldict_stat
), "The batch size and the len of ldict_stat dos not match {}".format(
len(ldict_stat))
print(ldict_stat)
assert type(ldict_stat[0]) == type(
{}), "Inside the list should be dict not {}".format(ldict_stat[0])
print("[TEST] load_data function")
dataX, data_label = load_data(input_dataset,
x_shape=None,
label_shape=None,
normalization=True,
dict_band_X=None,
dict_band_label=None,
dict_rescale_type=None)
print("Using the csv stats for s2 and normalize",
np.mean(dataX[0, :, :, 4]), np.mean(data_label[0, :, :, 0]))
dataX, data_label = load_data(input_dataset,
x_shape=None,
label_shape=None,
normalization=True,
dict_band_X=None,
dict_band_label=None,
dict_rescale_type=None)
print("Using the previous normalization method",
np.mean(dataX[0, :, :, 4]), np.mean(data_label[0, :, :, 0]))
def __init__(self, train_yaml, model_yaml, sess):
""":param train_yaml,model_yaml two dictionnaries"""
self.k_step = train_yaml["k_step"]
print(train_yaml)
print(model_yaml)
# SHAPE PARAMETER
self.img_rows = 256
self.img_cols = 256
self.channels = CHANNEL
self.img_shape = (self.img_rows, self.img_cols, self.channels)
print(type(train_yaml["lr"]))
# PATH
self.model_name = model_yaml["model_name"]
self.model_dir = train_yaml["training_dir"] + self.model_name + "/"
self.this_training_dir = self.model_dir + "training_{}/".format(
train_yaml["training_number"])
self.saving_image_path = self.this_training_dir + "saved_training_images/"
self.saving_logs_path = self.this_training_dir + "logs/"
self.checkpoint_dir = self.this_training_dir + "checkpoints/"
# TRAIN PARAMETER
self.epoch = train_yaml["epoch"]
self.batch_size = train_yaml["batch_size"]
self.sess = sess
self.learning_rate = train_yaml["lr"]
self.fact_g_lr = train_yaml["fact_g_lr"]
self.beta1 = train_yaml["beta1"]
self.data_X, self.data_y = load_data(train_yaml["train_directory"])
self.num_batches = self.data_X.shape[0] // self.batch_size
self.model_yaml = model_yaml
self.saving_step = train_yaml["im_saving_step"]
# LOSSES
self.wasserstein = train_yaml["wasserstein"]
if self.wasserstein:
self.generator_loss = load_loss("wasser_gene_loss")
self.discriminator_loss = load_loss("wasser_discri_loss")
else:
self.generator_loss = load_loss(train_yaml["generator_loss"])
self.discriminator_loss = load_loss(
train_yaml["discriminator_loss"])
print(self.discriminator_loss)
# test
self.sample_num = train_yaml[
"n_train_image_saved"] # number of generated images to be saved
# REDUCE THE DISCRIMINATOR PERFORMANCE
self.val_lambda = train_yaml["lambda"]
self.real_label_smoothing = tuple(train_yaml["real_label_smoothing"])
self.fake_label_smoothing = tuple(train_yaml["fake_label_smoothing"])
self.sigma_init = train_yaml["sigma_init"]
self.sigma_step = train_yaml['sigma_step']
self.sigma_decay = train_yaml["sigma_decay"]
self.ite_train_g = train_yaml["train_g_multiple_time"]
def create_h5_data(input_dir, output_path, train_yaml, model_yaml):
data_X, data_y, scale_dict_train = load_data(
input_dir,
x_shape=model_yaml["input_shape"],
label_shape=model_yaml["dim_gt_image"],
normalization=train_yaml["normalization"],
dict_band_X=train_yaml["dict_band_x"],
dict_band_label=train_yaml["dict_band_label"],
dict_rescale_type=train_yaml["dict_rescale_type"],
fact_s2=train_yaml["s2_scale"],
fact_s1=train_yaml["s1_scale"],
s2_bands=train_yaml["s2bands"],
s1_bands=train_yaml["s1bands"],
lim=train_yaml["lim_train_tile"])
hf = h5py.File(output_path, 'w')
hf.create_dataset('data_X', data=data_X)
hf.create_dataset('data_y', data=data_y)
hf.close()
return output_path
plt.savefig(history_img_path)
plt.show()
if __name__ == "__main__":
# 获取训练配置和语料信息
configs = get_config()
dataset_information = get_dataset_information(configs["preprocess"]["dataset_information_path"])
epochs = configs["train"]["train_epochs"]
data_path = configs["train"]["data_path"]
num_examples = configs["train"]["num_examples"]
dataset_name = configs["preprocess"]["dataset_name"]
# 加载训练数据
train_audio_data_path_list, train_text_list = load_data(dataset_name, data_path, num_examples)
valid_data_path = configs["valid"]["data_path"]
# 是否含有验证valid数据集,若有则加载，若没有，则将train数据按比例切分一部分为valid数据
if valid_data_path:
valid_num_examples = configs["valid"]["num_examples"]
valid_audio_data_path_list, valid_text_list = load_data(dataset_name,
valid_data_path,
valid_num_examples)
else:
valid_percent = configs["valid"]["valid_percent"]
pos = ceil(len(train_audio_data_path_list) * valid_percent / 100)
valid_audio_data_path_list, valid_text_list = train_audio_data_path_list[-pos:], train_text_list[-pos:]
train_audio_data_path_list, train_text_list = train_audio_data_path_list[:-pos], train_text_list[:-pos]
# 构建train_data和valid_data
def save_model(model_, path):
"""
:param model_: trained model
:param path: path for saving model
:return: None
"""
model_.save_model(path)
if __name__ == '__main__':
args = parser.parse_args()
path_to_dir = args.dir_path if args.dir_path[
-1] == '/' else args.dir_path + '/'
# загрузка обучающей и валидационной выборки
Xtrain, ytrain = load_data(path_to_dir + 'data_split/train.csv')
Xval, yval = load_data(path_to_dir + 'data_split/val.csv')
# загрузка файла с метками и соответствующими им классами
with open(path_to_dir + 'data_split/attacks_lable.json') as file:
attacks = json.load(file)
# определение гиперпараметров модели
model_params = dict(boosting_type=args.boosting_type,
objective='multiclass',
num_class=len(attacks.values()),
num_leaves=args.num_leaves,
learning_rate=args.learning_rate,
feature_fraction=args.feature_fraction,
bagging_fraction=args.bagging_fraction,
bagging_freq=args.bagging_freq,
verbose=args.verbose)
train_params = dict(num_boost_round=args.num_boost_round,
fig.tight_layout()
fig.savefig(dir_path + 'plots/confusion_matrix_booster.png')
# функция для построения графика важности признаков модели
def plot_feature_importance(model_, num_features, dir_path):
"""
:param model_: trained lgbm model
:param num_features: Max number of features to plot
:return: None
"""
fig, ax = plt.subplots(figsize=(15, 15))
lgb.plot_importance(model_, ax=ax, max_num_features=num_features)
fig.savefig(dir_path + 'plots/feature_importance_booster.png')
if __name__ == '__main__':
args = parser.parse_args()
path_to_dir = args.dir_path if args.dir_path[
-1] == '/' else args.dir_path + '/'
# загрузка сохраненой модели
model = lgb.Booster(model_file=path_to_dir + 'model/booster.txt')
# загрузка тестовой выборки
Xtest, ytest = load_data(path_to_dir + 'data_split/test.csv')
# формирование вектора предсказаний
predictions = predict_(model, Xtest)
# построение матрицы несоответствий и графика важности признаков
test_results(ytest, predictions, path_to_dir)
plot_feature_importance(model, args.num_features_importance, path_to_dir)
def predict_on_iter(self,
batch,
path_save,
l_image_id=None,
un_rescale=True):
"""given an iter load the model at this iteration, returns the a predicted_batch but check if image have been saved at this directory
:param dataset:
:param batch could be a string : path to the dataset or an array corresponding to the batch we are going to predict on
"""
if type(batch) == type(
"u"
): # the param is an string we load the bathc from this directory
#print("We load our data from {}".format(batch))
l_image_id = find_image_indir(batch + XDIR, "npy")
batch, _ = load_data(batch,
x_shape=self.model_yaml["input_shape"],
label_shape=self.model_yaml["dim_gt_image"],
normalization=self.normalization,
dict_band_X=self.dict_band_X,
dict_band_label=self.dict_band_label,
dict_rescale_type=self.dict_rescale_type,
dict_scale=self.scale_dict_train,
fact_s2=self.fact_s2,
fact_s1=self.fact_s1,
s2_bands=self.s2bands,
s1_bands=self.s1bands,
clip_s2=False)
else:
if l_image_id is None:
print("We defined our own index for image name")
l_image_id = [i for i in range(batch.shape[0])]
assert len(l_image_id) == batch.shape[
0], "Wrong size of the name of the images is {} should be {} ".format(
len(l_image_id), batch.shape[0])
if os.path.isdir(path_save):
print(
"[INFO] the directory where to store the image already exists")
data_array, path_tile, _ = load_from_dir(
path_save, self.model_yaml["dim_gt_image"])
return data_array
else:
create_safe_directory(path_save)
batch_res = self.generator.predict(batch)
# if un_rescale: # remove the normalization made on the data
# _, batch_res, _ = rescale_array(batch, batch_res, dict_group_band_X=self.dict_band_X,
# dict_group_band_label=self.dict_band_label,
# dict_rescale_type=self.dict_rescale_type,
# dict_scale=self.scale_dict_train, invert=True, fact_scale2=self.fact_s2,
# fact_scale1=self.fact_s1,clip_s2=False)
assert batch_res.shape[0] == batch.shape[
0], "Wrong prediction should have shape {} but has shape {}".format(
batch_res.shape, batch.shape)
if path_save is not None:
# we store the data at path_save
for i in range(batch_res.shape[0]):
np.save(
"{}_image_{}".format(path_save,
l_image_id[i].split("/")[-1]),
batch_res[i, :, :, :])
return batch_res
def __init__(self, model_yaml, train_yaml):
"""
Args:
model_yaml: dictionnary with the model parameters
train_yaml: dictionnary the tran parameters
"""
self.sigma_val = 0
self.model_yaml = model_yaml
self.img_rows = 28
self.img_cols = 28
self.channels = 1
self.img_shape = (self.img_rows, self.img_cols, self.channels)
if "dict_band_x" not in train_yaml:
self.dict_band_X = None
self.dict_band_label = None
self.dict_rescale_type = None
else:
self.dict_band_X = train_yaml["dict_band_x"]
self.dict_band_label = train_yaml["dict_band_label"]
self.dict_rescale_type = train_yaml["dict_rescale_type"]
self.s1bands = train_yaml["s1bands"]
self.s2bands = train_yaml["s2bands"]
# self.latent_dim = 100
# PATH
self.model_name = model_yaml["model_name"]
self.model_dir = train_yaml["training_dir"] + self.model_name + "/"
self.this_training_dir = self.model_dir + "training_{}/".format(
train_yaml["training_number"])
self.saving_image_path = self.this_training_dir + "saved_training_images/"
self.saving_logs_path = self.this_training_dir + "logs/"
self.checkpoint_dir = self.this_training_dir + "checkpoints/"
self.previous_checkpoint = train_yaml["load_model"]
# TRAIN PARAMETER
self.normalization = train_yaml["normalization"]
self.epoch = train_yaml["epoch"]
self.batch_size = train_yaml["batch_size"]
# self.sess = sess
self.learning_rate = train_yaml["lr"]
self.fact_g_lr = train_yaml["fact_g_lr"]
self.beta1 = train_yaml["beta1"]
self.val_directory = train_yaml["val_directory"]
self.fact_s2 = train_yaml["s2_scale"]
self.fact_s1 = train_yaml["s1_scale"]
self.data_X, self.data_y, self.scale_dict_train = load_data(
train_yaml["train_directory"],
x_shape=model_yaml["input_shape"],
label_shape=model_yaml["dim_gt_image"],
normalization=self.normalization,
dict_band_X=self.dict_band_X,
dict_band_label=self.dict_band_label,
dict_rescale_type=self.dict_rescale_type,
fact_s2=self.fact_s2,
fact_s1=self.fact_s1,
s2_bands=self.s2bands,
s1_bands=self.s1bands,
lim=train_yaml["lim_train_tile"])
self.val_X, self.val_Y, scale_dict_val = load_data(
self.val_directory,
x_shape=model_yaml["input_shape"],
label_shape=model_yaml["dim_gt_image"],
normalization=self.normalization,
dict_band_X=self.dict_band_X,
dict_band_label=self.dict_band_label,
dict_rescale_type=self.dict_rescale_type,
dict_scale=self.scale_dict_train,
fact_s2=self.fact_s2,
fact_s1=self.fact_s1,
s2_bands=self.s2bands,
s1_bands=self.s1bands,
lim=train_yaml["lim_val_tile"])
print("Loading the data done dataX {} dataY {}".format(
self.data_X.shape, self.data_y.shape))
self.gpu = train_yaml["n_gpu"]
self.num_batches = self.data_X.shape[0] // self.batch_size
self.model_yaml = model_yaml
self.im_saving_step = train_yaml["im_saving_step"]
self.w_saving_step = train_yaml["weights_saving_step"]
self.val_metric_step = train_yaml["metric_step"]
# REDUCE THE DISCRIMINATOR PERFORMANCE
self.val_lambda = train_yaml["lambda"]
self.real_label_smoothing = tuple(train_yaml["real_label_smoothing"])
self.fake_label_smoothing = tuple(train_yaml["fake_label_smoothing"])
self.sigma_init = train_yaml["sigma_init"]
self.sigma_step = train_yaml['sigma_step']
self.sigma_decay = train_yaml["sigma_decay"]
self.ite_train_g = train_yaml["train_g_multiple_time"]
self.max_im = 10
self.strategy = tf.distribute.MirroredStrategy()
print('Number of devices: {}'.format(
self.strategy.num_replicas_in_sync))
self.buffer_size = self.data_X.shape[0]
self.global_batch_size = self.batch_size * self.strategy.num_replicas_in_sync
with self.strategy.scope():
self.d_optimizer = Adam(self.learning_rate, self.beta1)
self.g_optimizer = Adam(self.learning_rate * self.fact_g_lr,
self.beta1)
self.build_model()
self.model_writer = tf.summary.create_file_writer(
self.saving_logs_path)
import sys
sys.path.append("..")
from utils.load_dataset import load_data
from utils.audio_process import get_max_audio_length
from utils.text_process import get_process_text_list, get_max_label_length, tokenize
if __name__ == "__main__":
configs = get_config()
dataset_name = configs["preprocess"]["dataset_name"]
data_path = configs["train"]["data_path"]
text_row_style = configs["preprocess"]["text_row_style"]
num_examples = configs["train"]["num_examples"]
# 获取语料里所有语音路径list和文本list
audio_data_path_list, text_list = load_data(dataset_name, data_path,
num_examples)
# 基于文本按照某种mode切分文本
mode = configs["preprocess"]["text_process_mode"]
process_text_list = get_process_text_list(text_list, mode)
# 将文本处理成对应的token数字序列
text_int_sequences, tokenizer = tokenize(process_text_list)
# 获取音频和文本的最大length，从而进行数据补齐
audio_feature_type = configs["other"]["audio_feature_type"]
max_input_length = get_max_audio_length(audio_data_path_list,
audio_feature_type)
max_label_length = get_max_label_length(text_int_sequences)
# 将数据集的相关信息写入dataset_information.json文件
# 加载模型检查点
checkpoint = tf.train.Checkpoint(model=model, optimizer=optimizer)
manager = tf.train.CheckpointManager(
checkpoint,
directory=configs["checkpoint"]['directory'],
max_to_keep=configs["checkpoint"]['max_to_keep'])
if manager.latest_checkpoint:
checkpoint.restore(manager.latest_checkpoint)
dataset_name = configs["preprocess"]["dataset_name"]
test_data_path = configs["test"]["data_path"]
num_examples = configs["test"]["num_examples"]
# 加载测试集数据(audio_data_path_list, text_list)
test_data = load_data(dataset_name, test_data_path, num_examples)
batch_size = configs["test"]["batch_size"]
batchs = ceil(len(test_data[0]) / batch_size)
audio_feature_type = configs["other"]["audio_feature_type"]
max_input_length = dataset_information["max_input_length"]
# 构建测试数据生成器
test_data_generator = test_generator(test_data, batchs, batch_size,
audio_feature_type, max_input_length)
# 获取index_word
index_word = dataset_information["index_word"]
text_process_mode = configs["preprocess"]["text_process_mode"]
# 计算指标并打印