def test_create_and_save_contexts(self):
for key in self.input:
mapping = prepare_input(self.input[key]["schema_url"], key)
output_directory = os.path.join(os.path.dirname(__file__),
"../data/contexts")
context = create_and_save_contexts(mapping, self.base,
output_directory)
self.assertTrue(context)
def test_create_context_network(self):
for key in self.input:
mapping = prepare_input(self.input[key]["schema_url"], key)
create_network_context(mapping, self.base)
def test_create_and_save_contexts(self):
expected_output = {
"application_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
},
"array_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
},
"miaca_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
},
"project_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
},
"source_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
}
}
self.mock_request_patcher = patch('utils.schema2context.requests.get')
self.mock_request = self.mock_request_patcher.start()
self.mock_request.return_value.status_code = 200
self.mock_makedir_patcher = patch('os.makedirs')
self.mock_makedir = self.mock_makedir_patcher.start()
self.mock_makedir.return_value = True
with patch('builtins.open', new_callable=mock_open()):
self.mock_json_load_patcher = patch(
'utils.schema2context.json.loads')
self.mock_json_load = self.mock_json_load_patcher.start()
self.mock_json_load.return_value = {
"id": "https://w3id.org/dats/schema/person_schema.json",
"properties": {}
}
self.mock_resolver_patcher = patch(
'utils.schema2context.resolve_network')
self.mock_resolver = self.mock_resolver_patcher.start()
self.mock_resolver.return_value = {
"application_schema": {
"id":
"https://w3id.org/mircat/miaca/schema/application_schema.json"
},
"array_schema": {
"id":
"https://w3id.org/mircat/miaca/schema/array_schema.json"
},
"miaca_schema": {
"id":
"https://fairsharing.github.io/mircat/miaca/schema/miaca_schema.json"
},
"project_schema": {
"id":
"https://fairsharing.github.io/mircat/miaca/schema/project_schema.json"
},
"source_schema": {
"id":
"https://fairsharing.github.io/mircat/miaca/schema/source_schema.json"
}
}
mapping = prepare_input(
"https://w3id.org/dats/schema/person_schema.json", "DATS")
output_directory = os.path.join(os.path.dirname(__file__),
"../data/contexts")
contexts = create_and_save_contexts(mapping, self.base,
output_directory)
with self.assertRaises(Exception) as context:
create_and_save_contexts(mapping, self.base,
[output_directory])
self.assertTrue("Please provide a valid path to your directory"
in context.exception)
self.mock_request_patcher.stop()
self.mock_makedir_patcher.stop()
self.mock_json_load_patcher.stop()
self.mock_resolver_patcher.stop()
self.assertTrue(contexts == expected_output)
def test_prepare_input(self):
self.mock_resolver_patcher = patch(
'utils.schema2context.resolve_network')
self.mock_resolver = self.mock_resolver_patcher.start()
self.mock_resolver.return_value = {
"person_schema.json": {
"id": "https://w3id.org/dats/schema/person_schema.json"
},
"identifier_info_schema.json": {
"id":
"https://w3id.org/dats/schema/identifier_info_schema.json"
},
"alternate_identifier_info_schema.json": {
"id":
"https://w3id.org/dats/schema/alternate_identifier_info_schema.json"
},
"related_identifier_info_schema.json": {
"id":
"https://w3id.org/dats/schema/related_identifier_info_schema.json"
},
"organization_schema.json": {
"id": "https://w3id.org/dats/schema/organization_schema.json"
},
"annotation_schema.json": {
"id": "https://w3id.org/dats/schema/annotation_schema.json"
},
"category_values_pair_schema.json": {
"id":
"https://w3id.org/dats/schema/category_values_pair_schema.json"
}
}
network_name = "DATS"
expected_output = {
"networkName": "DATS",
"schemas": {
"person_schema.json":
"https://w3id.org/dats/schema/person_schema.json",
"identifier_info_schema.json":
"https://w3id.org/dats/schema/identifier_info_schema.json",
"alternate_identifier_info_schema.json":
"https://w3id.org/dats/schema/alternate_identifier_info_schema.json",
"related_identifier_info_schema.json":
"https://w3id.org/dats/schema/related_identifier_info_schema.json",
"organization_schema.json":
"https://w3id.org/dats/schema/organization_schema.json",
"annotation_schema.json":
"https://w3id.org/dats/schema/annotation_schema.json",
"category_values_pair_schema.json":
"https://w3id.org/dats/schema/category_values_pair_schema.json"
}
}
url = "https://w3id.org/dats/schema/person_schema.json"
mapping_variable = prepare_input(url, network_name)
self.assertTrue(mapping_variable == expected_output)
self.mock_resolver_patcher.stop()
second_url = "test123"
with self.assertRaises(Exception) as context:
prepare_input(second_url, network_name)
self.assertTrue(
"Error with one or more schemas" in context.exception)
def test_create_network_context(self):
expected_output = {
"application_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
},
"array_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
},
"miaca_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
},
"project_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
},
"source_schema": {
"sdo": {
"@context": {
"sdo": "https://schema.org",
"Person": "sdo:",
"@language": "en"
}
},
"obo": {
"@context": {
"obo": "http://purl.obolibrary.org/obo/",
"Person": "obo:",
"@language": "en"
}
}
}
}
self.mock_request_patcher = patch('utils.schema2context.requests.get')
self.mock_request = self.mock_request_patcher.start()
self.mock_request.return_value.status_code = 200
self.mock_makedir_patcher = patch('os.makedirs')
self.mock_makedir = self.mock_makedir_patcher.start()
self.mock_makedir.return_value = True
with patch('builtins.open', new_callable=mock_open()):
self.mock_json_load_patcher = patch(
'utils.schema2context.json.loads')
self.mock_json_load = self.mock_json_load_patcher.start()
self.mock_json_load.return_value = {
"id": "https://w3id.org/dats/schema/person_schema.json",
"properties": {}
}
self.mock_resolver_patcher = patch(
'utils.schema2context.resolve_network')
self.mock_resolver = self.mock_resolver_patcher.start()
self.mock_resolver.return_value = {
"application_schema": {
"id":
"https://w3id.org/mircat/miaca/schema/application_schema.json"
},
"array_schema": {
"id":
"https://w3id.org/mircat/miaca/schema/array_schema.json"
},
"miaca_schema": {
"id":
"https://fairsharing.github.io/mircat/miaca/schema/miaca_schema.json"
},
"project_schema": {
"id":
"https://fairsharing.github.io/mircat/miaca/schema/project_schema.json"
},
"source_schema": {
"id":
"https://fairsharing.github.io/mircat/miaca/schema/source_schema.json"
}
}
mapping = prepare_input(
"https://w3id.org/dats/schema/person_schema.json", "DATS")
contexts = create_network_context(mapping, self.base)
self.mock_request_patcher.stop()
self.mock_makedir_patcher.stop()
self.mock_json_load_patcher.stop()
self.mock_resolver_patcher.stop()
self.assertTrue(contexts == expected_output)