def test_data_file_update_url_different_file_not_indexed( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp): """ Test submitting the different data (with NO id provided) and updating the URL field. HOWEVER the file hash and size in the new data do NOT match the previously submitted data. The file hash/size provided does NOT match an already indexed file. e.g. The file is not yet indexed. The asssumption is that the user is attempting to UPDATE the index with a new file but didn't provide a full id, just the same submitter_id as before. Without an ID provided, sheepdog falls back on secondary keys (being the submitter_id/project). There is already a match for that, BUT the provided file hash/size is different than the previously submitted one. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = DEFAULT_UUID document.urls = [DEFAULT_URL] get_index_uuid.return_value = document # index yeilds no match given hash/size get_index_hash.return_value = None resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) entity = assert_single_entity_from_response(resp) # now submit again but change url new_url = 'some/new/url/location/to/add' updated_file = copy.deepcopy(DEFAULT_METADATA_FILE) updated_file['urls'] = new_url updated_file['object_id'] = DEFAULT_UUID updated_file['md5sum'] = DEFAULT_FILE_HASH.replace('0', '2') updated_file['file_size'] = DEFAULT_FILE_SIZE + 1 resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=updated_file) # no index or alias creation assert not create_index.called assert not create_alias.called # make sure original url is still there and new url is NOT assert DEFAULT_URL in document.urls assert new_url not in document.urls # response assert_negative_response(resp) assert_single_entity_from_response(resp)
def test_data_file_already_indexed_id_provided( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, monkeypatch, ): """ Test submitting when the file is already indexed in the index client and an id is provided in the submission. NOTE: signpostclient will NOT create add a file to the index service if an ID is provided """ monkeypatch.setitem(flask.current_app.config, "USE_SIGNPOST", True) submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf70000" get_index_uuid.return_value = document # signpostclient cannot find by hash/size get_index_hash.return_value = None # signpost create will return a document create_index.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid file = copy.deepcopy(DEFAULT_METADATA_FILE) file["id"] = document.did resp = submit_metadata_file( client, pg_driver, admin, submitter, cgci_blgsp, data=file ) # no index or alias creation assert not create_index.called assert not create_alias.called # no support for aliases assert not create_alias.called # response assert_negative_response(resp) assert_single_entity_from_response(resp)
def test_data_file_update_url_id_provided_different_file_already_indexed( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp): """ Test submitting the same data again (with the id provided) and updating the URL field (should get added to the indexed file in index service). HOWEVER the file hash and size in the new data MATCH A DIFFERENT FILE in the index service that does NOT have the id provided. The asssumption is that the user is attempting to UPDATE the index with a new file they've already submitted under a different id. FIXME At the moment, we do not allow updating like this """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document_with_id = MagicMock() document_with_id.did = DEFAULT_UUID document_with_id.urls = [DEFAULT_URL] different_file_matching_hash_and_size = MagicMock() different_file_matching_hash_and_size.did = '14fd1746-61bb-401a-96d2-342cfaf70000' different_file_matching_hash_and_size.urls = [DEFAULT_URL] get_index_uuid.return_value = document_with_id get_index_hash.return_value = different_file_matching_hash_and_size submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # now submit again but change url new_url = 'some/new/url/location/to/add' updated_file = copy.deepcopy(DEFAULT_METADATA_FILE) updated_file['urls'] = new_url updated_file['id'] = DEFAULT_UUID updated_file['md5sum'] = DEFAULT_FILE_HASH.replace('0', '2') updated_file['file_size'] = DEFAULT_FILE_SIZE + 1 resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=updated_file) # no index or alias creation assert not create_index.called assert not create_alias.called # make sure original url is still there and new url is NOT assert DEFAULT_URL in document_with_id.urls assert DEFAULT_URL in different_file_matching_hash_and_size.urls assert new_url not in document_with_id.urls assert new_url not in different_file_matching_hash_and_size.urls # response assert_negative_response(resp) assert_single_entity_from_response(resp)
def test_data_file_update_url_invalid_id( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, ): """ Test submitting the same data again (with the WRONG id provided). i.e. ID provided doesn't match the id from the index service for the file found with the hash/size provided FIXME: the 1:1 between node id and index/file id is temporary so this test may need to be modified in the future """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf70000" document.urls = [DEFAULT_URL] get_index_hash.return_value = document # the uuid provided doesn't have a matching indexed file get_index_uuid.return_value = None submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # now submit again but change url new_url = "some/new/url/location/to/add" updated_file = copy.deepcopy(DEFAULT_METADATA_FILE) updated_file["urls"] = new_url updated_file["id"] = DEFAULT_UUID resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=updated_file) # no index or alias creation assert not create_index.called assert not create_alias.called # make sure original url is still there and new url is NOT assert DEFAULT_URL in document.urls assert new_url not in document.urls # response assert_negative_response(resp) assert_single_entity_from_response(resp)
def test_data_file_update_url_id_provided_different_file_not_indexed( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp): """ Test submitting the same data again (with the id provided) and updating the URL field. HOWEVER the file hash and size in the new data do NOT match the previously submitted data for the given ID. The file hash/size provided does NOT match an already indexed file. e.g. The file is not yet indexed. The asssumption is that the user is attempting to UPDATE the index with a new file. FIXME At the moment, we do not allow updating like this """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = DEFAULT_UUID document.urls = [DEFAULT_URL] get_index_uuid.return_value = document # index yeilds no match given hash/size get_index_hash.return_value = None submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # now submit again but change url new_url = 'some/new/url/location/to/add' updated_file = copy.deepcopy(DEFAULT_METADATA_FILE) updated_file['urls'] = new_url updated_file['id'] = DEFAULT_UUID updated_file['md5sum'] = DEFAULT_FILE_HASH.replace('0', '2') updated_file['file_size'] = DEFAULT_FILE_SIZE + 1 resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=updated_file) # no index or alias creation assert not create_index.called assert not create_alias.called # make sure original url is still there and new url is NOT assert DEFAULT_URL in document.urls assert new_url not in document.urls # response assert_negative_response(resp) assert_single_entity_from_response(resp)
def test_create_file_no_required_index( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, require_index_exists_on, ): """ With REQUIRE_FILE_INDEX_EXISTS = True. Test submitting a data file that does not exist in indexd (should raise an error and should not create an index or an alias). """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) # no record in indexd for this file get_index_uuid.return_value = None get_index_hash.return_value = None # creating raises an error resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) assert resp.status_code == 400 # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_negative_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create"
def test_create_file_no_required_index(create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, require_index_exists_on): """ With REQUIRE_FILE_INDEX_EXISTS = True. Test submitting a data file that does not exist in indexd (should raise an error and should not create an index or an alias). """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) # no record in indexd for this file get_index_uuid.return_value = None get_index_hash.return_value = None # creating raises an error resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) assert resp.status_code == 400 # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_negative_response(resp) entity = assert_single_entity_from_response(resp) assert entity['action'] == 'create' path = '/v0/submission/CGCI/BLGSP/export/?format=json&ids={nid}'.format( nid=entity['id']) r = client.get(path, headers=submitter) data = r.json assert len(data) == 1
def test_data_file_not_indexed(create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, monkeypatch): """ Test node and data file creation when neither exist and no ID is provided. """ monkeypatch.setitem(flask.current_app.config, 'USE_SIGNPOST', True) submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) get_index_uuid.return_value = None get_index_hash.return_value = None # signpost create will return a document document = MagicMock() document.did = '14fd1746-61bb-401a-96d2-342cfaf70000' create_index.return_value = document resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # index creation should be called with no args for SIGNPOST assert create_index.call_count == 1 args, kwargs = create_index.call_args_list[0] assert not args assert not kwargs # no support for aliases assert not create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity['action'] == 'create'
def test_data_file_update_url( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, ): """ Test submitting the same data again but updating the URL field (should get added to the indexed file in index service). """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf70000" document.urls = [DEFAULT_URL] get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # now submit again but change url new_url = "some/new/url/location/to/add" updated_file = copy.deepcopy(DEFAULT_METADATA_FILE) updated_file["urls"] = new_url resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=updated_file) # no index or alias creation assert not create_index.called assert not create_alias.called # make sure new url are in the document and patch gets called assert document.urls == [new_url] assert document.patch.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "update" assert entity["id"] != document.did
def test_data_file_update_multiple_urls(create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp): """ Test submitting the same data again but updating the URL field (should get added to the indexed file in index service). """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = '14fd1746-61bb-401a-96d2-342cfaf70000' document.urls = [DEFAULT_URL] get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # now submit again but change url new_url = 'some/new/url/location/to/add' another_new_url = 'some/other/url' updated_file = copy.deepcopy(DEFAULT_METADATA_FILE) # comma separated list of urls INCLUDING the url that's already there updated_file['urls'] = DEFAULT_URL + ',' + new_url + ',' + another_new_url resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=updated_file) # no index or alias creation assert not create_index.called assert not create_alias.called # make sure original url and new url are in the document and patch gets called assert DEFAULT_URL in document.urls assert new_url in document.urls assert another_new_url in document.urls assert document.patch.called # make sure no duplicates were added assert len(document.urls) == 3 # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity['action'] == 'update'
def test_data_file_update_url_id_provided(create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp): """ Test submitting the same data again (with the id provided) and updating the URL field (should get added to the indexed file in index service). """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = '14fd1746-61bb-401a-96d2-342cfaf70000' document.urls = [DEFAULT_URL] get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # now submit again but change url new_url = 'some/new/url/location/to/add' updated_file = copy.deepcopy(DEFAULT_METADATA_FILE) updated_file['urls'] = new_url updated_file['id'] = document.did resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=updated_file) # no index or alias creation assert not create_index.called assert not create_alias.called # make sure original url and new url are in the document and patch gets called assert DEFAULT_URL in document.urls assert new_url in document.urls assert document.patch.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity['action'] == 'update' # make sure uuid in node is the same as the uuid from index # FIXME this is a temporary solution so these tests will probably # need to change in the future assert entity['id'] == document.did
def test_data_file_not_indexed_id_provided( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, monkeypatch, ): """ Test node and data file creation when neither exist and an ID is provided. NOTE: signpostclient will NOT create add a file to the index service if an ID is provided """ monkeypatch.setitem(flask.current_app.config, "USE_SIGNPOST", True) submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) get_index_uuid.return_value = None get_index_hash.return_value = None # signpost create will return a document document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf70000" create_index.return_value = document file = copy.deepcopy(DEFAULT_METADATA_FILE) file["id"] = DEFAULT_UUID resp = submit_metadata_file( client, pg_driver, admin, submitter, cgci_blgsp, data=file ) # no index creation assert not create_index.called # no support for aliases assert not create_alias.called # response assert_negative_response(resp) assert_single_entity_from_response(resp)
def test_data_file_already_indexed_id_provided( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, ): """ Test submitting when the file is already indexed in the index client and an id is provided in the submission. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf70000" get_index_uuid.return_value = document get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid file = copy.deepcopy(DEFAULT_METADATA_FILE) file["id"] = document.did resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=file) # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create" # make sure uuid in node is the same as the uuid from index # FIXME this is a temporary solution so these tests will probably # need to change in the future assert entity["id"] == document.did
def test_can_submit_data_file_with_asterisk_json( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, ): """ Test that we can submit a file when some fields have asterisks prepended """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf70000" get_index_uuid.return_value = document get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid file = copy.deepcopy(DEFAULT_METADATA_FILE) file["id"] = document.did # insert asterisks before the property names for key in file.keys(): file["*{}".format(key)] = file.pop(key) resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=file) # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create"
def test_data_file_not_indexed_id_provided( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, require_index_exists_off, ): """ Test node and data file creation when neither exist and an ID is provided. That ID should be used for the node and file index creation """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) get_index_uuid.return_value = None get_index_hash.return_value = None file = copy.deepcopy(DEFAULT_METADATA_FILE) file["id"] = DEFAULT_UUID resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=file) # index creation assert create_index.call_count == 1 args, kwargs = create_index.call_args_list[0] assert "did" in kwargs did = kwargs["did"] assert "hashes" in kwargs assert kwargs["hashes"].get("md5") == DEFAULT_FILE_HASH assert "urls" in kwargs assert DEFAULT_URL in kwargs["urls"] # alias creation assert create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create" # make sure uuid in node is the same as the uuid from index # FIXME this is a temporary solution so these tests will probably # need to change in the future assert did == DEFAULT_UUID assert entity["id"] == DEFAULT_UUID
def test_link_case_insensitivity( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, ): """ Test that links are case insensitive. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) for i in range(16): document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf7000" + str(i) document.urls = [DEFAULT_URL] get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid updated_file = copy.deepcopy(DEFAULT_METADATA_FILE) updated_file["submitter_id"] = str(i) updated_file["experiments"]["submitter_id"] = "".join( random.choice([k.upper(), k.lower()]) for k in updated_file["experiments"]["submitter_id"]) resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=updated_file) # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create"
def test_data_file_already_indexed( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, ): """ Test submitting when the file is already indexed in the index client and no ID is provided. sheepdog should fall back on the hash/size of the file to find it in indexing service. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf70000" get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create" path = "/v0/submission/CGCI/BLGSP/export/?format=json&ids={nid}".format( nid=entity["id"]) r = client.get(path, headers=submitter) data = r.json assert len(data) == 1 assert data[0]["object_id"] == document.did assert data[0]["id"] != document.did
def test_data_file_already_indexed( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, monkeypatch, ): """ Test submitting when the file is already indexed in the index client and no ID is provided. sheepdog should fall back on the hash/size of the file to find it in indexing service. NOTE: signpostclient will create another file in the index service regardless of whether or not the file exists. signpostclient does not have capabilities of searching for files based on hash/size """ monkeypatch.setitem(flask.current_app.config, "USE_SIGNPOST", True) submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) # signpostclient cannot find by hash/size get_index_hash.return_value = None get_index_uuid.return_value = None # signpost create will return a document document = MagicMock() document.did = "14fd1746-61bb-401a-96d2-342cfaf70000" create_index.return_value = document resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # index creation should be called with no args for SIGNPOST assert create_index.call_count == 1 args, kwargs = create_index.call_args_list[0] assert not args assert not kwargs # no support for aliases assert not create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create"
def test_data_file_not_indexed( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, require_index_exists_off, ): """ Test node and data file creation when neither exist and no ID is provided. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) get_index_uuid.return_value = None get_index_hash.return_value = None resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # index creation assert create_index.call_count == 1 _, kwargs = create_index.call_args_list[0] assert "did" in kwargs did = kwargs["did"] assert "hashes" in kwargs assert kwargs["hashes"].get("md5") == DEFAULT_FILE_HASH assert "urls" in kwargs assert DEFAULT_URL in kwargs["urls"] # alias creation assert create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create" path = "/v0/submission/CGCI/BLGSP/export/?format=json&ids={nid}".format( nid=entity["id"]) r = client.get(path, headers=submitter) data = r.json assert len(data) == 1 assert did == None
def test_data_file_already_indexed(create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp): """ Test submitting when the file is already indexed in the index client and no ID is provided. sheepdog should fall back on the hash/size of the file to find it in indexing service. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) document = MagicMock() document.did = '14fd1746-61bb-401a-96d2-342cfaf70000' get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity['action'] == 'create' # make sure uuid in node is the same as the uuid from index # FIXME this is a temporary solution so these tests will probably # need to change in the future assert entity['id'] == document.did
def test_data_file_not_indexed( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, require_index_exists_off): """ Test node and data file creation when neither exist and no ID is provided. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) get_index_uuid.return_value = None get_index_hash.return_value = None resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp) # index creation assert create_index.call_count == 1 _, kwargs = create_index.call_args_list[0] assert 'did' in kwargs did = kwargs['did'] assert 'hashes' in kwargs assert kwargs['hashes'].get('md5') == DEFAULT_FILE_HASH assert 'urls' in kwargs assert DEFAULT_URL in kwargs['urls'] # alias creation assert create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity['action'] == 'create' # make sure uuid in node is the same as the uuid from index # FIXME this is a temporary solution so these tests will probably # need to change in the future assert entity['id'] == did
def test_data_file_already_indexed_object_id_provided_no_hash( create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, cgci_blgsp, ): """ Test submitting when the file is already indexed in the index client, its object_id is provided in the submission, and the size and hash DO NOT match those of the indexed file. The empty acl means the file was just uploaded and the empty hash and size mean the file is not ready for metadata submission yet. The submission should fail. The acl and uploader field should NOT have been updated. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) file = copy.deepcopy(DEFAULT_METADATA_FILE) # provide the object_id of an existing indexed file file["object_id"] = "14fd1746-61bb-401a-96d2-342cfaf70000" document = MagicMock() document.did = file["object_id"] document.size = None document.hashes = None document.acl = [] document.uploader = DEFAULT_SUBMITTER_ID get_index_uuid.return_value = document get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=file) # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_negative_response(resp) entity = assert_single_entity_from_response(resp) # check that the acl and uploader fields have NOT been updated in indexd assert not document.acl assert document.uploader == DEFAULT_SUBMITTER_ID
def test_data_file_already_indexed_object_id_provided_hash_match( update_acl_uploader_indexd, create_alias, create_index, get_index_uuid, get_index_hash, client, pg_driver, admin, submitter, submitter_name, cgci_blgsp, ): """ Test submitting when the file is already indexed in the index client, an id is provided in the submission, and the size and hash match those of the indexed file. The empty acl means the file was just uploaded. The submission should succeed but no new index should be created. The acl and uploader field should have been updated as part of the data upload flow. """ submit_first_experiment(client, pg_driver, admin, submitter, cgci_blgsp) file = copy.deepcopy(DEFAULT_METADATA_FILE) # provide the object_id of an existing indexed file file["object_id"] = "14fd1746-61bb-401a-96d2-342cfaf70000" document = MagicMock() document.did = file["object_id"] document.size = file["file_size"] document.hashes = {"md5": file["md5sum"], "other": "abc123"} document.acl = [] document.uploader = submitter_name get_index_uuid.return_value = document get_index_hash.return_value = document # only return the correct document by uuid IF the uuid provided is # the one from above def get_index_by_uuid(uuid): if uuid == document.did: return document else: return None get_index_uuid.side_effect = get_index_by_uuid resp = submit_metadata_file(client, pg_driver, admin, submitter, cgci_blgsp, data=file) # no index or alias creation assert not create_index.called assert not create_alias.called # response assert_positive_response(resp) entity = assert_single_entity_from_response(resp) assert entity["action"] == "create" path = "/v0/submission/CGCI/BLGSP/export/?format=json&ids={nid}".format( nid=entity["id"]) r = client.get(path, headers=submitter) data = r.json assert len(data) == 1 assert data[0]["object_id"] == file["object_id"] # check that the acl and uploader fields have been updated in indexd assert update_acl_uploader_indexd.called