def upload_to_pacs(path, anonymize=False):
all_dcms = [get_all_dcms_inside_dir(dir, checking=True, anonymize=True) for dir in get_all_sub_dirs(path)] if anonymize else \
[get_all_dcms_inside_dir(dir, checking=True) for dir in get_all_sub_dirs(path)]
pacs_dict = read_json('pacs.json')
pacs_lis = [Orthanc(k, v) for k, v in pacs_dict.items()]
N = len(pacs_dict.keys())
pacs_names = ['pacs' + str(n) for n in range(N)]
for i, pacs in enumerate(pacs_lis):
t = time()
for dir_dcms in all_dcms:
upload_folder(pacs, pacs_names[i], dir_dcms)
print("Takes {} secs to upload to {}".format((time() - t),
pacs_names[i]))
def FromConfig(cls, path):
"""Creates a client from a config file.
A configuration file is a plain python file which creates a client
called "cl" in its local namespace.
"""
# if path is a module
if hasattr(path, '__file__'):
path = os.path.splitext(path.__file__)[0] + '.py'
for d in utils.get_all_sub_dirs(path)[::-1]:
sys.path.insert(0, d)
cf = {'sys':sys}; execfile(path, cf, cf)
return cf['cl']
def FromConfig(cls, path):
"""Creates a client from a config file.
A configuration file is a plain python file which creates a client
called "cl" in its local namespace.
The configuration file may be passed as a module or as path to the
configuration file.
"""
if isinstance(path, types.ModuleType):
reload(path)
return path.cl
import sys, utils
for d in utils.get_all_sub_dirs(path)[::-1]:
sys.path.insert(0, d)
cf = {'sys':sys}; execfile(path, cf, cf)
return cf['cl']
def FromConfig(cls, path):
"""Creates a client from a config file.
A configuration file is a plain python file which creates a client
called "cl" in its local namespace.
"""
# if path is a module
if hasattr(path, '__file__'):
path = os.path.splitext(path.__file__)[0] + '.py'
for d in utils.get_all_sub_dirs(path)[::-1]:
sys.path.insert(0, d)
cf = {
'sys': sys
}
execfile(path, cf, cf)
return cf['cl']
def FromConfig(cls, path):
"""Creates a client from a config file.
A configuration file is a plain python file which creates a client
called "cl" in its local namespace.
The configuration file may be passed as a module or as path to the
configuration file.
"""
if isinstance(path, types.ModuleType):
reload(path)
return path.cl
import sys, utils
for d in utils.get_all_sub_dirs(path)[::-1]:
sys.path.insert(0, d)
cf = {
'sys': sys
}
execfile(path, cf, cf)
return cf['cl']
def mp_uploading(path):
all_dcms = [
get_all_dcms_inside_dir(dir, checking=True)
for dir in get_all_sub_dirs(path)
]
pacs_dict = read_json('pacs.json')
pacs_lis = [Orthanc(k, v) for k, v in pacs_dict.items()]
N = len(pacs_dict.keys())
pacs_names = ['pacs' + str(n) for n in range(N)]
p = Pool(5)
for i, pacs in enumerate(pacs_lis):
t = time()
p.apply_async(
upload_folder,
zip(
len(all_dcms) * [pacs],
len(all_dcms) * [pacs_names[i]], all_dcms))
print("Takes {} secs to upload to {}".format((time() - t),
pacs_names[i]))