return same,msg
try:
bl = next(genB)
except StopIteration:
return False,msg + ['file '+str(a)+' has more lines than '+str(b)]
if al.rstrip('\n\r') != bl.rstrip('\n\r'):
same = False
print('al '+repr(al)+" != bl "+repr(bl))
msg += ['line '+str(i)+' is not the same!']
#first test XML to XML
print('Testing XML to XML ...')
tree = TS.parse(open(os.path.join('parse','example_xml.xml'),'r'))
strTree = TS.tostring(tree)
fname = os.path.join('parse','fromXmltoXML.xml')
open(fname,'w').write(toString(strTree))
same,msg = checkSameFile(open(fname,'r'),open(os.path.join('gold',fname),'r'))
if same:
results['passed']+=1
print(' ... passed!')
else:
results['failed']+=1
print(' ... failures in XML to XML:')
print(' ',msg[0])
getpot = open(os.path.join('parse','example_getpot.i'),'r')
gtree = TS.parse(getpot,dType='GetPot')
def XMLread(self,xmlNode,runInfoSkip = set(),xmlFilename=None):
"""
parses the xml input file, instances the classes need to represent all objects in the simulation
@ In, xmlNode, ElementTree.Element, xml node to read in
@ In, runInfoSkip, set, optional, nodes to skip
@ In, xmlFilename, string, optional, xml filename for relative directory
@ Out, None
"""
#TODO update syntax to note that we read InputTrees not XmlTrees
unknownAttribs = utils.checkIfUnknowElementsinList(['printTimeStamps','verbosity','color','profile'],list(xmlNode.attrib.keys()))
if len(unknownAttribs) > 0:
errorMsg = 'The following attributes are unknown:'
for element in unknownAttribs:
errorMsg += ' ' + element
self.raiseAnError(IOError,errorMsg)
self.verbosity = xmlNode.attrib.get('verbosity','all').lower()
if 'printTimeStamps' in xmlNode.attrib.keys():
self.raiseADebug('Setting "printTimeStamps" to',xmlNode.attrib['printTimeStamps'])
self.messageHandler.setTimePrint(xmlNode.attrib['printTimeStamps'])
if 'color' in xmlNode.attrib.keys():
self.raiseADebug('Setting color output mode to',xmlNode.attrib['color'])
self.messageHandler.setColor(xmlNode.attrib['color'])
if 'profile' in xmlNode.attrib.keys():
thingsToProfile = list(p.strip().lower() for p in xmlNode.attrib['profile'].split(','))
if 'jobs' in thingsToProfile:
self.jobHandler.setProfileJobs(True)
self.messageHandler.verbosity = self.verbosity
runInfoNode = xmlNode.find('RunInfo')
if runInfoNode is None:
self.raiseAnError(IOError,'The RunInfo node is missing!')
self.__readRunInfo(runInfoNode,runInfoSkip,xmlFilename)
### expand variable groups before continuing ###
## build variable groups ##
varGroupNode = xmlNode.find('VariableGroups')
# init, read XML for variable groups
if varGroupNode is not None:
varGroups = xmlUtils.readVariableGroups(varGroupNode,self.messageHandler,self)
else:
varGroups={}
# read other nodes
for child in xmlNode:
if child.tag=='VariableGroups':
continue #we did these before the for loop
if child.tag in list(self.whichDict.keys()):
self.raiseADebug('-'*2+' Reading the block: {0:15}'.format(str(child.tag))+2*'-')
Class = child.tag
if len(child.attrib.keys()) == 0:
globalAttributes = {}
else:
globalAttributes = child.attrib
#if 'verbosity' in globalAttributes.keys(): self.verbosity = globalAttributes['verbosity']
if Class not in ['RunInfo','OutStreams'] and "returnInputParameter" in self.addWhatDict[Class].__dict__:
paramInput = self.addWhatDict[Class].returnInputParameter()
paramInput.parseNode(child)
for childChild in paramInput.subparts:
childName = childChild.getName()
if "name" not in childChild.parameterValues:
self.raiseAnError(IOError,'not found name attribute for '+childName +' in '+Class)
name = childChild.parameterValues["name"]
if "needsRunInfo" in self.addWhatDict[Class].__dict__:
self.whichDict[Class][name] = self.addWhatDict[Class].returnInstance(childName,self.runInfoDict,self)
else:
self.whichDict[Class][name] = self.addWhatDict[Class].returnInstance(childName,self)
self.whichDict[Class][name].handleInput(childChild, self.messageHandler, varGroups, globalAttributes=globalAttributes)
elif Class != 'RunInfo':
for childChild in child:
subType = childChild.tag
if 'name' in childChild.attrib.keys():
name = childChild.attrib['name']
self.raiseADebug('Reading type '+str(childChild.tag)+' with name '+name)
#place the instance in the proper dictionary (self.whichDict[Type]) under his name as key,
#the type is the general class (sampler, data, etc) while childChild.tag is the sub type
#if name not in self.whichDict[Class].keys(): self.whichDict[Class][name] = self.addWhatDict[Class].returnInstance(childChild.tag,self)
if Class != 'OutStreams':
if name not in self.whichDict[Class].keys():
if "needsRunInfo" in self.addWhatDict[Class].__dict__:
self.whichDict[Class][name] = self.addWhatDict[Class].returnInstance(childChild.tag,self.runInfoDict,self)
else:
self.whichDict[Class][name] = self.addWhatDict[Class].returnInstance(childChild.tag,self)
else:
self.raiseAnError(IOError,'Redundant naming in the input for class '+Class+' and name '+name)
else:
if name not in self.whichDict[Class][subType].keys():
self.whichDict[Class][subType][name] = self.addWhatDict[Class][subType].returnInstance(childChild.tag,self)
else:
self.raiseAnError(IOError,'Redundant naming in the input for class '+Class+' and sub Type'+subType+' and name '+name)
#now we can read the info for this object
#if globalAttributes and 'verbosity' in globalAttributes.keys(): localVerbosity = globalAttributes['verbosity']
#else : localVerbosity = self.verbosity
if Class != 'OutStreams':
self.whichDict[Class][name].readXML(childChild, self.messageHandler, varGroups, globalAttributes=globalAttributes)
else:
self.whichDict[Class][subType][name].readXML(childChild, self.messageHandler, globalAttributes=globalAttributes)
else:
self.raiseAnError(IOError,'not found name attribute for one '+Class)
else:
#tag not in whichDict, check if it's a documentation tag
if child.tag not in ['TestInfo']:
self.raiseAnError(IOError,'<'+child.tag+'> is not among the known simulation components '+repr(child))
# If requested, duplicate input
# ###NOTE: All substitutions to the XML input tree should be done BEFORE this point!!
if self.runInfoDict.get('printInput',False):
fileName = os.path.join(self.runInfoDict['WorkingDir'],self.runInfoDict['printInput'])
self.raiseAMessage('Writing duplicate input file:',fileName)
outFile = open(fileName,'w')
outFile.writelines(utils.toString(TreeStructure.tostring(xmlNode))+'\n') #\n for no-end-of-line issue
outFile.close()
if not set(self.stepSequenceList).issubset(set(self.stepsDict.keys())):
self.raiseAnError(IOError,'The step list: '+str(self.stepSequenceList)+' contains steps that have not been declared: '+str(list(self.stepsDict.keys())))