def splice_prep(step, pos_1, pos_2):
""" Introduces the main body of the splicosome
to assemble with the other parts and cut the intron """
left, right = pos_1[:], pos_2[:]
left[0] *= 0.94
right[0] *= 0.89
left[1] *= -1
right[1] *= -1
splice_left = Sphere(left, SPLICE_SIZE, "scale", [1.5, -1, 0],
models.splice_model)
splice_right = Sphere(right, SPLICE_SIZE, "scale", [2, -1, 0],
models.splice_model)
coord = get_added_distance(TP_START[8], TP_DUR[8], [0, 16, 0], step)
y_loc = coord[1]
splice_down = Sphere([0.5 * TWITCH1, 15 - y_loc, 2], BIG_SPLICE_SIZE,
"scale", [0, -1.25, 0], models.splice_model)
text = Text(
'ttf', '"timrom.ttf"',
'"Here you see the main part of the spliceosome entering the screen"',
0, 0, 'translate', [-15, -4.5, 5], 'scale', [1, 1, 1],
models.text_model)
text2 = Text(
'ttf', '"timrom.ttf"',
'"The smaller parts wil connect the intron ends to the main part"', 0,
0, 'translate', [-15, -6, 5], 'scale', [1, 1, 1], models.text_model)
return [splice_left, splice_right, splice_down, text, text2]
def splice_cut(step, pos_1, pos_2):
""" Moves both splice parts near each other and makes the cut """
move = get_added_distance(TP_START[9], TP_DUR[9], [15, 5, 0], step)
x_change, y_change = move[0], move[1]
left, right = pos_1[:], pos_2[:]
left[0] = 0.94 * left[0] - x_change
right[0] = 0.89 * right[0] + x_change
left[1] = -1 * left[1] - y_change
right[1] = -1 * right[1] - y_change
splice_left = Sphere(left, SPLICE_SIZE, "scale", [1.5, -1, 0],
models.splice_model)
splice_right = Sphere(right, SPLICE_SIZE, "scale", [2, -1, 0],
models.splice_model)
splice_down = Sphere([0, -1, 2], BIG_SPLICE_SIZE, "scale", [0, -1.25, 0],
models.splice_model)
text = Text(
'ttf', '"timrom.ttf"',
'"Once the two smaller proteins have connected the intron ends"', 0, 0,
'translate', [-15, -4.5, 5], 'scale', [1, 1, 1], models.text_model)
text2 = Text('ttf', '"timrom.ttf"',
'"to the bigger protein, they will leave the reaction site"',
0, 0, 'translate', [-15, -6, 5], 'scale', [1, 1, 1],
models.text_model)
return [splice_left, splice_right, splice_down, text, text2]
def bind_schematic(frame, size):
"""
Animating the binding part schematicly
"""
insuline_model = Texture(Pigment('color', [0, 1, 0.5], ), Finish('reflection', 0))
text_model = Texture(Pigment('color', [1, 1, 0], ), Finish('reflection', 0))
insuline = []
s = size
# frame 30 -> 120
if frame < 120:
x = (frame - 30) * (24.5*s / 90) - 30*s
y = (frame - 30) * (-15*s / 90) + 20*s
else:
x = -5*s
y = 5*s
insuline.append(Sphere([x, y, 0], s * 1.5, insuline_model))
insuline.append(Text('ttf', '"timrom.ttf"', '"{}"'.format(str('Insulin')), 0.5, [0, 0, 0], text_model, 'scale', 5, 'translate', [x - s, y-0.5*s, -2*s]))
insuline.append(Sphere([0-x, y, 0], s * 1.5, insuline_model))
insuline.append(Text('ttf', '"timrom.ttf"', '"{}"'.format(str('Insulin')), 0.5, [0, 0, 0], text_model, 'scale', 5, 'translate', [0-x -1.4*s, y-0.5*s, -2*s]))
return insuline
def s0_intro_text():
""" This show the title of the animation with our names """
title = Text('ttf', '"timrom.ttf"', '"RNA Splicing"', 0, 0, 'translate',
[-2.85, 0.9, -0], 'scale', [5, 5, 1], models.text_model)
names = Text('ttf', '"timrom.ttf"', '"Reindert Visser and Vincent Talen"',
0, 0, 'translate', [-7.2, -0.5, -0], 'scale', [3, 3, 1],
models.text_model)
return Scene(models.camera_scene0,
objects=[title, names] + models.lights_scene1)
def splice_text_scene():
text = Text(
'ttf', '"timrom.ttf"',
'"Here we see pre-mRNA, it got created by duplicating a single strand of DNA"',
0, 0, 'translate', [-15, 5, 5], 'scale', [1, 1, 1], models.text_model)
text2 = Text(
'ttf', '"timrom.ttf"',
'"In this pre-mRNA there are non-usable pieces, these are called introns"',
0, 0, 'translate', [-15, -5.5, 5], 'scale', [1, 1, 1],
models.text_model)
return [text, text2]
def s1_cell_overview():
""" This scene is a single cell centered without any movement """
cell_sphere = Sphere([0, 0, 0], 25, models.cell_model)
text = Text('ttf', '"timrom.ttf"',
'"To begin you first need to know that"', 0, 0, 'translate',
[-14.5, -5, -30], 'scale', [2.5, 2.5, 1], models.text_model)
text2 = Text('ttf', '"timrom.ttf"',
'"RNA Splicing takes place in the cell"', 0, 0, 'translate',
[-14.5, -6.25, -30], 'scale', [2.5, 2.5, 1],
models.text_model)
return Scene(models.camera_scene1,
objects=[cell_sphere, text, text2] + models.lights_scene1)
def frame(step):
""" Makes an image/frame """
time_point = (step / TOTAL_FRAMES) * SETTINGS.Duration
logger.info(" @Time: %.4fs, Step: %d", time_point, step)
# Declaration of the end times of the scenes
global TP_END
TP_END = [4, 8, 11, 15, 18, 26, 32, 38, 44, 50, 58, 64]
# scene 0 1 2 3 4 5 6 7 8 9 10, 11
# Globals that change per frame
global TP_START, TP_DUR, TWITCH1, TWITCH2
TP_START, TP_DUR = get_time_point_data(TP_END)
TWITCH1, TWITCH2 = make_random_int()
if time_point < TP_END[0]:
scene = s0_intro_text()
elif time_point < TP_END[1]:
scene = s1_cell_overview()
elif time_point < TP_END[2]:
scene = s2_cell_zoom(step)
elif time_point < TP_END[3]:
scene = s3_in_cell()
elif time_point < TP_END[4]:
scene = s4_zoom_to_mrna(step)
elif time_point < TP_END[11]:
scene = scenes_mrna(step, time_point)
else:
text = Text('ttf', '"timrom.ttf"', '"Uh-oh, this ain\'t right"', 0, 0,
'translate', [-4, 0, 0], 'scale', [2, 2, 0],
models.text_model)
scene = Scene(models.default_camera,
objects=[models.default_light, text])
return scene
def bind_phosphorus(frame, size):
"""
Animating the process of phosfor binding to the Tyr
"""
phosphorus_model = Texture(Pigment('color', [1, 0, 1], ), Finish('reflection', 0))
text_model = Texture(Pigment('color', [1, 1, 0], ), Finish('reflection', 0))
phosphorus = []
s = size
# frame 480 -> 570
x_locs = [[-20, -5], [20, 5], [-20, -5], [20, 5]]
y_locs = [13, 13, 10, 10]
for _ in range(4):
if frame < 570:
x = (frame - 480) * ((x_locs[_][1]*s - x_locs[_][0]*s) / 90) + x_locs[_][0]*s
y = 0 - y_locs[_] * s
else:
x = x_locs[_][1]*s
y = 0 - y_locs[_]*s
phosphorus.append(Sphere([x, y, 2], s * 1.2, phosphorus_model))
phosphorus.append(Text('ttf', '"timrom.ttf"', '"{}"'.format(str('P')), 0.5, [0, 0, 0], text_model, 'scale', 7, 'translate', [x - 0.2*s, y-0.5*s, -1.5*s]))
return phosphorus
def splicing_final():
""" Provides the spliceosome and the text whilst the mrna forms """
splice_down = Sphere([0, -1, 2], BIG_SPLICE_SIZE, "scale", [0, -1.25, 0],
models.splice_model)
text = Text(
'ttf', '"timrom.ttf"',
'"The spliceosome now disconnects the intron and binds one end of"', 0,
0, 'translate', [-15, -4.5, 5], 'scale', [1, 1, 1], models.text_model)
text2 = Text(
'ttf', '"timrom.ttf"',
'"the intron to a suitable place on the other end of the intron."', 0,
0, 'translate', [-15, -6, 5], 'scale', [1, 1, 1], models.text_model)
text3 = Text(
'ttf', '"timrom.ttf"',
'"Meanwhile the exons get put together to form the finished mRNA"', 0,
0, 'translate', [-15, -7.5, 5], 'scale', [1, 1, 1], models.text_model)
return [splice_down, text, text2, text3]
def s3_in_cell():
""" This scene makes it clear that the splicing process takes place in the nucleus """
nucleus = Sphere([20, 7.5, 0], 7.5, models.nucleus_model)
nucleus_text = Text('ttf', '"timrom.ttf"', '"Nucleus"', 0, 0, 'translate',
[6.75, 2.8, -7.6], 'scale', [2, 2, 0],
models.text_model)
text = Text('ttf', '"timrom.ttf"',
'"To be even more specific, the RNA splicing"', 0, 0,
'translate', [-13.25, -4.2, -0], 'scale', [2.35, 2.35, 1],
models.text_model)
text2 = Text('ttf', '"timrom.ttf"',
'"takes place in the nucleus of the cell"', 0, 0, 'translate',
[-13.25, -5.4, -0], 'scale', [2.35, 2.35, 1],
models.text_model)
return Scene(models.camera_scene3,
objects=[nucleus, nucleus_text, text, text2] +
models.spot_lights)
def splice_intro(step):
""" Introduces both two splice complexes from the angles of the screen """
change_list = get_added_distance(TP_START[6], TP_DUR[6], [12, 0, 0], step)
x_change = change_list[0]
splice_left = Sphere([-15 + x_change, TWITCH1, 0], SPLICE_SIZE, "scale",
[1.5, -1, 0], models.splice_model)
splice_right = Sphere([15 - 0.95 * x_change, TWITCH2, 0], SPLICE_SIZE,
"scale", [2, -1, 0], models.splice_model)
text = Text('ttf', '"timrom.ttf"',
'"The removal of the introns is done by the spliceosome"', 0,
0, 'translate', [-15, -4.5, 5], 'scale', [1, 1, 1],
models.text_model)
text2 = Text(
'ttf', '"timrom.ttf"',
'"As can been seen here the spliceosome consists out of multiple proteins"',
0, 0, 'translate', [-15, -6, 5], 'scale', [1, 1, 1], models.text_model)
return [splice_left, splice_right, text, text2]
def splicing_fadeout(step):
""" Moves the whole spliceosome to the corner with the intron """
x_fly, y_fly = fly_away(step)
splice_down = Sphere([x_fly, -1 - y_fly, 2], BIG_SPLICE_SIZE, "scale",
[0, -1.25, 0], models.splice_model)
text = Text('ttf', '"timrom.ttf"',
'"The intron later gets recycled so it can be used again,"', 0,
0, 'translate', [-15, -4.5, 5], 'scale', [1, 1, 1],
models.text_model)
text2 = Text('ttf', '"timrom.ttf"',
'"the spliceosome goes to the next site and"', 0, 0,
'translate', [-15, -6, 5], 'scale', [1, 1, 1],
models.text_model)
text3 = Text('ttf', '"timrom.ttf"',
'"the mRNA will be used to make a protein"', 0, 0,
'translate', [-15, -7.5, 5], 'scale', [1, 1, 1],
models.text_model)
return [splice_down, text, text2, text3]
def splice_move_close(pos_1, pos_2):
""" Merges the two splice complexes holding the pre-mRNA """
left, right = pos_1[:], pos_2[:]
left[0] *= 0.75
right[0] *= 0.65
left[1] *= -1
right[1] *= -1
splice_left = Sphere(left, SPLICE_SIZE, "scale", [1.5, -1, 0],
models.splice_model)
splice_right = Sphere(right, SPLICE_SIZE, "scale", [2, -1, 0],
models.splice_model)
text = Text(
'ttf', '"timrom.ttf"',
'"Two parts of the spliceosome seek out the beginning and the end of an intron"',
0, 0, 'translate', [-15, -4.5, 5], 'scale', [1, 1, 1],
models.text_model)
text2 = Text(
'ttf', '"timrom.ttf"',
'"Their job is to bring them closer together and hand them over"', 0,
0, 'translate', [-15, -6, 5], 'scale', [1, 1, 1], models.text_model)
return [splice_left, splice_right, text, text2]
def make_tyrine(loc, size):
"""
Creates the tyrine molecules
"""
text_model = Texture(Pigment('color', [1, 1, 0], ), Finish('reflection', 0))
cyl_model = Texture(Pigment('color', [0, 1, 0.5], ), Finish('reflection', 0))
tyr = []
y_always = [13, 13, 10, 10]
x_text = [-3, 5, -3, 5]
x_end = [-5, 5, -5, 5]
x = loc[0]
y = loc[1]
z = loc[2] + 7
for _ in range(4):
tyr.append(Cylinder([x, y-size * y_always[_], z], [x-size*x_end[_], y-size*y_always[_], z], size, cyl_model))
text = Text('ttf', '"timrom.ttf"', '"{}"'.format(str('Tyr')), 2, [0, 0, 0], text_model, 'scale', 5, 'translate', [x-size*x_text[_], y-size*y_always[_], z - 7])
tyr.append(text)
return tyr
def bind_IRS(frame, size):
"""
Animating the process of IRS binding to the phosfor
"""
IRS_model = Texture(Pigment('color', [1, 0, 1], ), Finish('reflection', 0))
text_model = Texture(Pigment('color', [1, 1, 0], ), Finish('reflection', 0))
IRS = []
s = size
# frame 570 -> 630
if frame < 630:
x = (frame - 570) * ((7*s-30*s) / 60) + 30*s
y = -12*s
else:
x = 7*s
y = -12*s
IRS.append(Sphere([x, y, 0], s * 2, IRS_model))
IRS.append(Text('ttf', '"timrom.ttf"', '"{}"'.format(str('IRS')), 0.5, [0, 0, 0], text_model, 'scale', 5, 'translate', [x - s, y, -2*s]))
return IRS
def get_animation_data(num=0,
start_frame=0,
sme_pos_ethanol=((70, 0, 0), (0, 0, 0), (-70, 0, 0)),
ethanol_start_wacht=0,
ethanol_mid_wacht=-1,
aldh_speed=0,
show_name=False):
"""
Gets the data for the animation
Needed data per object:
- (String) Name object
- (Bool) Molecule
- True (bool) part of molecule {if true keyframes end position xyz becomes offset}
- True (string) object to split
- True (list) atoms to split {!!Current program only supports 1 atom split at a time!!}
- (int) atom
- False (file_path) pdb document
- False (vapory components) components {!!These components are static and cant move!!}
- (list) The frames of the end position
- (int) frame
- (list) The xyz end positions
- (list) xyz end postions of the complement frame.
- (int/float) x position
- (int/float) y position
- (int/float) z position
Optional data per object:
- (list) The frames of the rotation
- (int) frame
- (list) The rotation end positions
- (list) rotation axes and radians to rotate of the complement frame
- (list) rotation axes
- (int/float) x axel (0-1)
- (int/float) y axel (0-1)
- (int/float) z axel (0-1)
- (list) radians
- (int/float) x axel
- (int/float) y axel
- (int/float) z axel
- (list) The frames when object should be shown of not
- (int) frame
- (list) shown or not for the the complement frame
- (bool) Should the object be shown
"""
ethanol_shown = False
if num == 0:
ethanol_shown = True
# Camera
camera = {
"name":
"camera",
"molecule": [False, [0, 0, 100], [0, 0, 0]],
"keyframe_endpos_frames": [0, 30, 90, 140, 190, 250, 280],
"keyframe_endpos": [
[[0, 0, 100], [0, 0, 0]],
[[30, 0, 50], [30, 0, -10]],
[[30, 0, 50], [30, 0, -10]],
[[0, 0, 75], [0, 0, 0]],
[[-30, 0, 50], [-30, 0, -10]],
[[-30, 0, 50], [-30, 0, -10]],
[[0, 0, 100], [0, 0, 0]],
],
}
# Static vapory objects
enzyme1 = {
"name":
"enzyme1",
"molecule": [
False,
Sphere([30, 0, -10], 4,
Texture(Pigment("color", [1, 0, 0], "filter", 0.2),
Finish("phong", 0.6, "reflection", 0.1))),
Text("ttf", '"timrom.ttf"', '"ADH"', 0.1, 0, "scale",
[2, 2, 2], models.text_model, "rotate", [0, 180, 0],
"translate", [32.5, -6, -10])
],
"keyframe_endpos_frames": [0],
"keyframe_endpos": [
[30, 0, -10],
],
}
enzyme2 = {
"name":
"enzyme2",
"molecule": [
False,
Sphere([-30, 0, -10], 4,
Texture(Pigment("color", [0, 1, 0], "filter", 0.2),
Finish("phong", 0.6, "reflection", 0.1))),
Text("ttf", '"timrom.ttf"', '"ALDH"', 0.1, 0, "scale",
[2, 2, 2], models.text_model, "rotate", [0, 180, 0],
"translate", [-27.5, -6, -10])
],
"keyframe_endpos_frames": [0],
"keyframe_endpos": [
[-30, 0, -10],
],
}
# Molecules step 1 (alcohol dehydrogenase)
ethanol1_1 = {
"name":
"ethanol{}_1".format(num),
"molecule": [True, False, "pdb/ethanol2.pdb"],
"keyframe_endpos_frames":
[20, 29, 30, 75, 90, 140, 141, 190, 205, 250],
"keyframe_endpos": [
[
sme_pos_ethanol[0][0] + 10, sme_pos_ethanol[0][1],
sme_pos_ethanol[0][2]
],
sme_pos_ethanol[0],
sme_pos_ethanol[0],
[30, 0, 0],
[30, 0, 0, "join", False, "h_movement{}_1".format(num)],
sme_pos_ethanol[1],
sme_pos_ethanol[1],
[-30, 0, 0],
[-30, 0, 0, "join", False, "water{}_3".format(num)],
sme_pos_ethanol[2],
],
"keyframe_rotation_frames":
[29, 30, 75, 90, 140, 141, 190, 205, 250, 500],
"keyframe_rotation": [
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1], [math.pi * 2, math.pi * 2, math.pi * 2]],
[[1, 1, 1], [math.pi * 2, math.pi * 2, math.pi * 2]],
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1], [math.pi * 2, math.pi * 2, math.pi * 2]],
[[1, 1, 1], [math.pi * 2, math.pi * 2, math.pi * 2]],
[[1, 1, 1], [math.pi * 2, math.pi * 2, math.pi * 2]],
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1], [math.pi * 2, math.pi * 2, math.pi * 2]],
[[1, 1, 1], [math.pi * 8, math.pi * 8, math.pi * 8]],
],
"keyframe_shown_frames": [0 - start_frame, 0, 250],
"keyframe_shown": [ethanol_shown, True, True],
}
water1_1 = {
"name":
"water{}_1".format(num),
"molecule": [True, False, "pdb/water.pdb"],
"keyframe_endpos_frames": [30, 75, 90, 140],
"keyframe_endpos": [
[-30, -70, 0],
[30, -7.5, 0],
[30, -7.5, 0, "join", False, "waterstof{}_1".format(num)],
[70, -70, 0],
],
"keyframe_rotation_frames": [30, 75, 90, 140],
"keyframe_rotation": [[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1],
[math.pi * 2, math.pi * 2, math.pi * 2]],
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1],
[math.pi * 2, math.pi * 2, math.pi * 2]]],
"keyframe_shown_frames": [0, 140],
"keyframe_shown": [True, False],
}
nad1_1 = {
"name":
"NAD{}_1".format(num),
"molecule": [True, False, "pdb/NAD.pdb"],
"keyframe_endpos_frames": [30, 75, 90, 140],
"keyframe_endpos": [
[-30, 70, 0],
[20, 7.5, 0],
[
20, 7.5, 0, "join", False, "h_movement_nad{}_1".format(num),
"hNAD{}_1".format(num)
],
[70, 70, 0],
],
"keyframe_rotation_frames": [30, 75, 90, 140],
"keyframe_rotation": [
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1], [math.pi, 1.5, 0]],
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1], [math.pi, math.pi * 2, math.pi]],
],
"keyframe_shown_frames": [0, 140],
"keyframe_shown": [True, False],
}
waterstof1_1 = {
"name": "waterstof{}_1".format(num),
"molecule": [True, True, "ethanol{}_1".format(num), [3]],
"keyframe_endpos_frames": [75, 90],
"keyframe_endpos": [
[0, 0, 0],
[-0.3, -5.5, -0.2],
],
"keyframe_shown_frames": [0, 90],
"keyframe_shown": [True, False],
}
hnad1_1 = {
"name": "hNAD{}_1".format(num),
"molecule": [True, True, "ethanol{}_1".format(num), [8]],
"keyframe_endpos_frames": [75, 90],
"keyframe_endpos": [
[0, 0, 0],
[-6, 2.7, -1.5],
],
"keyframe_shown_frames": [0, 90],
"keyframe_shown": [True, False],
}
h_movement1_1 = {
"name": "h_movement{}_1".format(num),
"molecule": [True, True, "ethanol{}_1".format(num), [4]],
"keyframe_endpos_frames": [75, 90],
"keyframe_endpos": [
[0, 0, 0],
[0.1, -0.3, 0.8],
],
"keyframe_shown_frames": [0, 90],
"keyframe_shown": [True, False],
}
h_movement_nad1_1 = {
"name": "h_movement_nad{}_1".format(num),
"molecule": [True, True, "NAD{}_1".format(num), [64]],
"keyframe_endpos_frames": [75, 90],
"keyframe_endpos": [
[0, 0, 0],
[-0.3, 0.2, -0.9],
],
"keyframe_shown_frames": [0, 90],
"keyframe_shown": [True, False],
}
# Molecules step 2 (ethanal dehydrogenase)
nad1_2 = {
"name":
"NAD{}_2".format(num),
"molecule": [True, False, "pdb/NAD.pdb"],
"keyframe_endpos_frames": [145, 190, 205, 260],
"keyframe_endpos": [
[-90, 70, 0],
[-40, 7.5, 0],
[
-40, 7.5, 0, "join", False, "h_movement_nad{}_2".format(num),
"hNAD{}_2".format(num)
],
[10, 70, 0],
],
"keyframe_rotation_frames": [145, 190, 205, 260],
"keyframe_rotation": [
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1], [math.pi, 1.5, 0]],
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1], [math.pi, math.pi * 2, math.pi]],
],
"keyframe_shown_frames": [0, 145, 250],
"keyframe_shown": [False, True, False],
}
water1_2 = {
"name":
"water{}_2".format(num),
"molecule": [True, False, "pdb/water.pdb"],
"keyframe_endpos_frames": [145, 190, 205, 260],
"keyframe_endpos": [
[-90, -70, 0],
[-30, -7.5, 0],
[-30, -7.5, 0, "join", False, "waterstof{}_2".format(num)],
[30, -70, 0],
],
"keyframe_rotation_frames": [145, 190, 205, 260],
"keyframe_rotation": [[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1],
[math.pi * 2, math.pi * 2, math.pi * 2]],
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1],
[math.pi * 2, math.pi * 2, math.pi * 2]]],
"keyframe_shown_frames": [0, 145, 250],
"keyframe_shown": [False, True, False],
}
water1_3 = {
"name":
"water{}_3".format(num),
"molecule": [True, False, "pdb/water.pdb"],
"keyframe_endpos_frames": [145, 190, 205, 260],
"keyframe_endpos": [
[-90, -70, 0],
[-35, -2, 0],
[-31, -2.2, 0.2],
[30, -70, 0],
],
"keyframe_rotation_frames": [145, 190, 205],
"keyframe_rotation": [
[[0, 0, 0], [0, 0, 0]],
[[1, 1, 1], [math.pi * 2, math.pi * 2, math.pi]],
[[1, 0, 0], [1, 0, 0]],
],
"keyframe_shown_frames": [0, 145, 205],
"keyframe_shown": [False, True, False],
}
waterstof1_2 = {
"name": "waterstof{}_2".format(num),
"molecule": [True, True, "ethanol{}_1".format(num), [6]],
"keyframe_endpos_frames": [190, 205],
"keyframe_endpos": [
[0, 0, 0],
[-0.3, -5.5, -0.2],
],
"keyframe_shown_frames": [190, 205],
"keyframe_shown": [True, False],
}
hnad1_2 = {
"name": "hNAD{}_2".format(num),
"molecule": [True, True, "water{}_3".format(num), [2]],
"keyframe_endpos_frames": [190, 205],
"keyframe_endpos": [
[0, 0, 0],
[-1.8, 5.8, 0],
],
"keyframe_shown_frames": [190, 205],
"keyframe_shown": [True, False],
}
h_movement_nad1_2 = {
"name": "h_movement_nad{}_2".format(num),
"molecule": [True, True, "NAD{}_2".format(num), [64]],
"keyframe_endpos_frames": [190, 205],
"keyframe_endpos": [
[0, 0, 0],
[-0.3, 0.2, -0.9],
],
"keyframe_shown_frames": [190, 205],
"keyframe_shown": [True, False],
}
if num == 0:
animation_objects = {
"camera": camera,
"enzyme1": enzyme1,
"enzyme2": enzyme2,
"ethanol{}_1".format(num): ethanol1_1,
"water{}_1".format(num): water1_1,
"NAD{}_1".format(num): nad1_1,
"waterstof{}_1".format(num): waterstof1_1,
"hNAD{}_1".format(num): hnad1_1,
"h_movement{}_1".format(num): h_movement1_1,
"h_movement_nad{}_1".format(num): h_movement_nad1_1,
"NAD{}_2".format(num): nad1_2,
"water{}_2".format(num): water1_2,
"water{}_3".format(num): water1_3,
"waterstof{}_2".format(num): waterstof1_2,
"hNAD{}_2".format(num): hnad1_2,
"h_movement_nad{}_2".format(num): h_movement_nad1_2,
}
else:
animation_objects = {
"ethanol{}_1".format(num): ethanol1_1,
"water{}_1".format(num): water1_1,
"NAD{}_1".format(num): nad1_1,
"waterstof{}_1".format(num): waterstof1_1,
"hNAD{}_1".format(num): hnad1_1,
"h_movement{}_1".format(num): h_movement1_1,
"h_movement_nad{}_1".format(num): h_movement_nad1_1,
"NAD{}_2".format(num): nad1_2,
"water{}_2".format(num): water1_2,
"water{}_3".format(num): water1_3,
"waterstof{}_2".format(num): waterstof1_2,
"hNAD{}_2".format(num): hnad1_2,
"h_movement_nad{}_2".format(num): h_movement_nad1_2,
}
for obj in animation_objects:
if show_name and not obj == "camera":
animation_objects[obj]["show_name"] = True
else:
animation_objects[obj]["show_name"] = False
if try_dict_keys(animation_objects[obj], "keyframe_endpos_frames"):
for frame in range(
len(animation_objects[obj]["keyframe_endpos_frames"])):
animation_objects = add_multipliers(
obj, frame, animation_objects, "keyframe_endpos_frames",
start_frame, ethanol_start_wacht, ethanol_mid_wacht,
aldh_speed)
if try_dict_keys(animation_objects[obj], "keyframe_rotation_frames"):
for frame in range(
len(animation_objects[obj]["keyframe_rotation_frames"])):
animation_objects = add_multipliers(
obj, frame, animation_objects, "keyframe_rotation_frames",
start_frame, ethanol_start_wacht, ethanol_mid_wacht,
aldh_speed)
if try_dict_keys(animation_objects[obj], "keyframe_shown_frames"):
for frame in range(
len(animation_objects[obj]["keyframe_shown_frames"])):
animation_objects = add_multipliers(
obj, frame, animation_objects, "keyframe_shown_frames",
start_frame, ethanol_start_wacht, ethanol_mid_wacht,
aldh_speed)
return animation_objects