def createMesh(self, color='w', opacity=0.15, silo=False):
_colors = dict(
w=(255, 255, 255, 255),
k=(0, 0, 0, 255),
gray=(175, 175, 175),
)
if silo:
v.AddPlot('Mesh', "mesh")
else:
v.AddPlot('Mesh', "Mesh")
ma = v.MeshAttributes()
ma.legendFlag = 0
ma.meshColor = _colors[color]
ma.meshColorSource = ma.MeshCustom
if (opacity < 1.):
ma.opaqueMode = ma.On
ma.opacity = opacity
v.SetPlotOptions(ma)
pname = v.GetPlotList().GetPlots(v.GetNumPlots() - 1).plotName
if silo:
plot = Plot(pname, 'mesh', ma)
else:
plot = Plot(pname, 'Mesh', ma)
self.nonplots.append(plot)
return plot
def setup_visit(plot_variable_data, db_name):
print 'Opening database...'
# Get the complete database name including directory path, db file
# pattern and extension, followed by the word database
# Example: db_filename = './output*.vtk database'
visit.OpenDatabase(db_name)
# Getting the list of current variables
db_meta_data = visit.GetMetaData(db_name)
scalar_list = [db_meta_data.GetScalars(i).name for i in range(db_meta_data.GetNumScalars())]
vector_list = [db_meta_data.GetVectors(i).name for i in range(db_meta_data.GetNumVectors())]
for vec in vector_list:
scalar_list.append(vec + '_magnitude')
# Check if current variable name exists in the database. If no, then
# res becomes 0. Hence, we need to define a scalar expression for the
# current variable
if plot_variable_data['plot variable'] in scalar_list or \
plot_variable_data['plot variable'] in vector_list:
visit.AddPlot(plot_variable_data['plot type'], \
plot_variable_data['plot variable'])
else:
print 'No existing variable of that name'
visit.DefineScalarExpression(plot_variable_data['plot variable'], \
plot_variable_data['plot variable definition'])
visit.AddPlot(plot_variable_data['plot type'], \
plot_variable_data['plot variable'])
if plot_variable_data['plot type'] == 'Pseudocolor':
p = visit.PseudocolorAttributes()
p.SetCentering(1)
p.colorTableName = 'hot_desaturated'
# p.colorTableName = 'rainbow'
visit.SetPlotOptions(p)
def make_slide(time):
plasma_file = vtk_path + plasma_file_head + str(time) +'.vtk'
paraxial_file = vtk_path + paraxial_file_head + str(time) + '.vtk'
fullwave_file = vtk_path + fullwave_file_head + str(time) + '.vtk'
print('opening plamsa file:' + plasma_file)
sts = vi.OpenDatabase(plasma_file,0,'VTK')
if (sts != 1):
print('open file failed! error code:' + str(sts))
return
sts = vi.AddPlot('Pseudocolor','cutoff')
vi.DrawPlots()
po = vi.GetPlotOptions()
vi.LoadAttribute(plasma_attr_file,po)
vi.SetPlotOptions(po)
print('opening paraxial file:' + paraxial_file)
sts = vi.OpenDatabase(paraxial_file,0,'VTK')
if (sts != 1):
print('open file failed! error code:' + str(sts))
return
sts = vi.AddPlot('Pseudocolor','Er_para')
vi.DrawPlots()
po = vi.GetPlotOptions()
vi.LoadAttribute(wave_attr_file,po)
vi.SetPlotOptions(po)
print('opening fullwave file:' + fullwave_file)
sts = vi.OpenDatabase(fullwave_file,0,'VTK')
if (sts != 1):
print('open file failed! error code:' + str(sts))
return
sts = vi.AddPlot('Pseudocolor','Er_fullw')
vi.DrawPlots()
po = vi.GetPlotOptions()
vi.LoadAttribute(wave_attr_file,po)
vi.SetPlotOptions(po)
view_attr = vi.GetView3D()
vi.LoadAttribute(view_attr_file,view_attr)
vi.SetView3D(view_attr)
anno_attr = vi.GetAnnotationAttributes()
vi.LoadAttribute(annotation_attr_file,anno_attr)
vi.SetAnnotationAttributes(anno_attr)
anno_names = vi.GetAnnotationObjectNames()
for name in anno_names:
legend = vi.GetAnnotationObject(name)
legend.numberFormat = "%# -9.2g"
legend.drawMinMax = 0
legend.controlTicks = 1
legend.numTicks = 3
vi.SaveWindow()
def setup_workspace(self, file):
define_flow_vpe("flow", pjoin(examples_dir, file), "pyocl_ops", 0, 0)
visit.AddPlot("Pseudocolor", "flow")
visit.DrawPlots()
visit.DefineScalarExpression("check",
"flow - ((d + p)^2.0 + (d-p)^2.0)")
visit.AddPlot("Pseudocolor", "check")
visit.DrawPlots()
def test_visit():
import visit
VISIT_ARGS = os.environ.get('VISIT_ARGS', ["-nosplash"])
if isinstance(VISIT_ARGS, str):
VISIT_ARGS = VISIT_ARGS.split()
for arg in VISIT_ARGS:
visit.AddArgument(arg)
visit.Launch()
print "visit is installed in", os.path.dirname(visit.__file__)
print "visit version", visit.Version()
visit.ResetView()
v3D = visit.GetView3D()
v3D.SetViewUp(0, 0, 1)
v3D.SetViewNormal(-0.5, -0.8, 0.4)
v3D.SetImageZoom(1.0)
visit.SetView3D(v3D)
aa = visit.AnnotationAttributes()
aa.SetAxesType(2) # outside edges
aa.SetDatabaseInfoFlag(False)
aa.SetUserInfoFlag(False)
visit.SetAnnotationAttributes(aa)
t = visit.CreateAnnotationObject("Text2D")
t.SetText("Hello VisIt!")
t.SetPosition(0.4, 0.9) # (0,0) is lower left corner
t.SetFontFamily(0) # 0: Arial, 1: Courier, 2: Times
t.SetWidth(0.25) # 25%
t.SetTextColor((0, 0, 0))
t.SetUseForegroundForTextColor(False)
t.SetVisible(True)
visit.OpenDatabase("tmp_.vtk")
visit.AddPlot("Mesh", "scalars")
ma = visit.MeshAttributes()
visit.SetPlotOptions(ma)
visit.AddPlot("Pseudocolor", "scalars")
pa = visit.PseudocolorAttributes()
visit.SetPlotOptions(pa)
visit.RedrawWindow()
visit.DrawPlots()
wait()
def test_get_isovol():
"""test get_isovol"""
r = np.full(3, False)
db = test_dir + "/test-isovol/"
iv = ivdb.IvDb(levels=levels, data=data, db=db)
if isdir(db):
shutil.rmtree(db)
mkdir(db)
mkdir(db + '/vols/')
# launch VisIt
import visit
try:
visit.LaunchNowin()
except:
pass
visit.OpenDatabase(test_mesh)
visit.AddPlot('Pseudocolor', data)
# run __get_isovol
lbound = 5
ubound = 15
i = 1
export_res, ubound_out = iv._IvDb__get_isovol(lbound, ubound, i)
# close VisIt
visit.CloseComputeEngine()
# check returned values
if export_res == 1:
r[0] = True
if ubound_out == ubound:
r[1] = True
# check that vol file produced are the same
gen_vol = db + "/vols/1.stl"
exp_vol = exp_vols_dir + "/1.stl"
r[2] = filecmp.cmp(gen_vol, exp_vol)
shutil.rmtree(db)
assert (all(r))
def generate_vols(self, filename):
"""Generates the isosurface volumes between the level values.
Data files are exported as STLs and saved in the folder db.
Files will be named based on their index corresponding to their
level values (0.stl is lowest values).
Input:
------
filename: string, path to vtk file with the mesh
"""
# create folder for database
self.__make_db_dir()
# launch VisIt
try:
v.LaunchNowin()
except:
pass
# open file
v.OpenDatabase(filename)
# read data using meshio to get min and max and make sure levels are
# within data bounds:
arbmin, arbmax, mins, maxs = self.__check_data(filename)
self.xmin = mins[0]
self.ymin = mins[1]
self.zmin = mins[2]
self.xmax = maxs[0]
self.ymax = maxs[1]
self.zmax = maxs[2]
self.levels.append(arbmax)
# plot the pseudocolor data in order to get volumes
v.AddPlot("Pseudocolor", self.data)
v.DrawPlots()
# iterate over all isovolume levels
for i, l in enumerate(self.levels):
res = 0
while res == 0:
# lower bound
if i == 0:
lbound = arbmin
else:
lbound = self.levels[i - 1]
# upper bound
ubound = self.levels[i]
# get volume
# res = 0 if no level found (should update to next level)
res, ubound = self.__get_isovol(lbound, ubound, i)
# delete plots
v.DeleteAllPlots()
# close visit
v.CloseComputeEngine()
def plotEnergyLinear(localPowerAllDB):
data = visit.OpenDatabase(localPowerAllDB, 0, 'Vs')
visit.AddPlot('Curve', 'Energy')
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.axes2D.yAxis.grid = 0
AnnotationAtts.axes2D.xAxis.grid = 0
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "z"
AnnotationAtts.axes2D.xAxis.title.units = "m"
AnnotationAtts.axes2D.yAxis.title.userTitle = 1
AnnotationAtts.axes2D.yAxis.title.userUnits = 1
AnnotationAtts.axes2D.yAxis.title.title = "Energy"
AnnotationAtts.axes2D.yAxis.title.units = "J"
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.databaseInfoFlag = 0
AnnotationAtts.legendInfoFlag = 0
visit.SetAnnotationAttributes(AnnotationAtts)
visit.DrawPlots()
CurveAtts = visit.CurveAttributes()
CurveAtts.showLines = 1
CurveAtts.lineStyle = CurveAtts.SOLID # SOLID, DASH, DOT, DOTDASH
CurveAtts.lineWidth = 2
CurveAtts.curveColorSource = CurveAtts.Custom # Cycle, Custom
CurveAtts.curveColor = (255, 0, 0, 255)
CurveAtts.showLabels = 0
CurveAtts.showLegend = 0
visit.SetPlotOptions(CurveAtts)
def DrawPlot(iWindow, plotInfo):
# choose window
visit.SetActiveWindow(iWindow)
# open database
visit.OpenDatabase(plotInfo.databaseName)
# create pseudocolor plot
visit.AddPlot("Pseudocolor", plotInfo.variableName)
# set pseudocolor attributes
SetPseudocolorAttributes(plotInfo.valMin, plotInfo.valMax)
# set view2d attributtes
SetView2dAttributes(plotInfo.domain, plotInfo.viewport)
# set annotation attributes
SetAnnotationAttributes(plotInfo.domain, plotInfo.legendInfo)
# set legend
SetLegend(plotInfo.legendInfo)
# set time text
SetTimeText(plotInfo.timeTextInfo)
# draw plot
visit.DrawPlots()
def plotPowNorm(localPowerAllDB):
data=visit.OpenDatabase(localPowerAllDB,0,'Vs')
visit.AddPlot('Pseudocolor','power_SI_Norm')
visit.DrawPlots()
View2DAtts = visit.View2DAttributes()
# View2DAtts.windowCoords = (0, 30, 0, 15.0796)
# View2DAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
# View2DAtts.fullFrameAutoThreshold = 100
View2DAtts.xScale = View2DAtts.LINEAR # LINEAR, LOG
View2DAtts.yScale = View2DAtts.LINEAR # LINEAR, LOG
View2DAtts.windowValid = 1
View2DAtts.fullFrameActivationMode = View2DAtts.On # On, Off, Auto
#View2DAtts.fullFrameAutoThreshold = 100
visit.SetView2D(View2DAtts)
visit.ResetView()
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.databaseInfoFlag = 0
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "ct-z"
AnnotationAtts.axes2D.xAxis.title.units = "m"
AnnotationAtts.axes2D.yAxis.title.userTitle = 1
AnnotationAtts.axes2D.yAxis.title.userUnits = 1
AnnotationAtts.axes2D.yAxis.title.title = "z"
AnnotationAtts.axes2D.yAxis.title.units = "m"
# AnnotationAtts.legendInfoFlag = 0
visit.SetAnnotationAttributes(AnnotationAtts)
def isosurfacePlot(self, stay=False, samples=100, contours=50):
visit.AddWindow()
returned = []
if len(visit.ListPlots()) > 0:
visit.SetActivePlots(0)
visit.HideActivePlots()
p = visit.PseudocolorAttributes()
q = visit.ResampleAttributes()
r = visit.IsosurfaceAttributes()
q.samplesX = samples
q.samplesY = samples
q.samplesZ = samples
r.contourNLevels = contours
plot = visit.AddPlot("Pseudocolor", "Heat")
visit.AddOperator("Resample")
# visit.AddOperator("Isosurface")
visit.SetOperatorOptions(q)
visit.SetOperatorOptions(r)
visit.SetPlotOptions(p)
visit.DrawPlots()
returned.append(visit.SaveWindow())
count = 0
visit.AddOperator("Isosurface")
visit.DrawPlots()
time.sleep(60)
returned.append(visit.SaveWindow())
return returned
def createContour(self, varname, value, color=None, linewidth=None):
"""Generic creation of a single contour without a legend"""
v.AddPlot('Contour', varname)
ca = v.ContourAttributes()
ca.contourMethod = ca.Value
ca.contourValue = (value,)
ca.colorType = ca.ColorBySingleColor
if color is None:
color = vrc.rcParams['contour.color']
if type(color) is str:
color = vc.common_colors[color]
ca.singleColor = color
if linewidth is None:
linewidth = vrc.rcParams['contour.linewidth']
ca.lineWidth = linewidth
# turn off legend for 2D surf
ca.legendFlag = 0
v.SetPlotOptions(ca)
pname = v.GetPlotList().GetPlots(v.GetNumPlots()-1).plotName
plot = Plot(pname, 'Contour', ca)
self.plots.append(plot)
return plot
def TimeSeriesS1():
visit.AddPlot('Curve', 's1')
visit.AddPlot('Curve', 's2')
visit.DrawPlots()
visit.AddWindow()
visit.AddPlot('Curve', 'pAverage')
visit.DrawPlots()
visit.SetActiveWindow(1)
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.axes2D.yAxis.grid = 1
AnnotationAtts.axes2D.xAxis.grid = 1
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "Position along the machine s"
AnnotationAtts.axes2D.xAxis.title.units = "m"
visit.SetAnnotationAttributes(AnnotationAtts)
visit.DrawPlots()
def LoadContourPlot(self):
(windowid,filename,var) = self.GetDetails()
if windowid is None: return
wid = viswinmapper[windowid]
visit.SetActiveWindow(wid)
visit.DeleteAllPlots()
visit.OpenDatabase(filename)
visit.AddPlot("Contour",var)
visit.DrawPlots()
def binPhase(eDB):
visit.OpenDatabase(eDB, 0)
visit.AddPlot("Pseudocolor", "operators/DataBinning/2D/electrons", 1, 1)
DataBinningAtts = visit.DataBinningAttributes()
DataBinningAtts.numDimensions = DataBinningAtts.Two # One, Two, Three
DataBinningAtts.dim1BinBasedOn = DataBinningAtts.Variable # X, Y, Z, Variable
DataBinningAtts.dim1Var = "electrons_zSI"
DataBinningAtts.dim1SpecifyRange = 1
DataBinningAtts.dim1MinRange = 0
DataBinningAtts.dim1MaxRange = 1.0E-7
DataBinningAtts.dim1NumBins = 100
DataBinningAtts.dim2BinBasedOn = DataBinningAtts.Variable # X, Y, Z, Variable
DataBinningAtts.dim2Var = "electrons_gamma"
DataBinningAtts.dim2SpecifyRange = 1
DataBinningAtts.dim2MinRange = 0.991
DataBinningAtts.dim2MaxRange = 1.005
DataBinningAtts.dim2NumBins = 100
DataBinningAtts.outOfBoundsBehavior = DataBinningAtts.Clamp # Clamp, Discard
DataBinningAtts.reductionOperator = DataBinningAtts.Sum # Average, Minimum, Maximum, StandardDeviation, Variance, Sum, Count, RMS, PDF
DataBinningAtts.varForReduction = "electrons_chargeSI"
DataBinningAtts.emptyVal = 0
DataBinningAtts.outputType = DataBinningAtts.OutputOnBins # OutputOnBins, OutputOnInputMesh
DataBinningAtts.removeEmptyValFromCurve = 1
visit.SetOperatorOptions(DataBinningAtts, 1)
visit.SetTimeSliderState(0)
visit.SetTimeSliderState(1)
PseudocolorAtts = visit.PseudocolorAttributes()
PseudocolorAtts.centering = PseudocolorAtts.Nodal # Natural, Nodal, Zonal
PseudocolorAtts.opacityType = PseudocolorAtts.Ramp # ColorTable, FullyOpaque, Constant, Ramp, VariableRange
PseudocolorAtts.colorTableName = "hot_desaturated"
visit.SetPlotOptions(PseudocolorAtts)
View2DAtts = visit.View2DAttributes()
View2DAtts.fullFrameActivationMode = View2DAtts.On
# View2DAtts.fullFrameAutoThreshold = 100
visit.SetView2D(View2DAtts)
visit.ResetView()
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.axes2D.yAxis.grid = 0
AnnotationAtts.axes2D.xAxis.grid = 0
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "ct-z"
AnnotationAtts.axes2D.xAxis.title.units = "m"
AnnotationAtts.axes2D.yAxis.title.userTitle = 1
AnnotationAtts.axes2D.yAxis.title.userUnits = 1
AnnotationAtts.axes2D.yAxis.title.title = "gamma"
AnnotationAtts.axes2D.yAxis.title.units = ""
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.databaseInfoFlag = 0
# AnnotationAtts.legendInfoFlag = 0
visit.SetAnnotationAttributes(AnnotationAtts)
visit.DrawPlots()
def pseudocolorPlot(self):
visit.AddWindow()
returned = []
if len(visit.ListPlots()) > 0:
visit.SetActivePlots(0)
visit.HideActivePlots()
p = visit.PseudocolorAttributes()
plot = visit.AddPlot("Pseudocolor", "Heat")
visit.SetPlotOptions(p)
visit.DrawPlots()
return visit.SaveWindow()
def plot(dbfile=None):
if not dbfile is None:
visit.OpenDatabase(dbfile)
else:
wi = visit.GetWindowInformation()
dbfile = wi.activeSource
md = visit.GetMetaData(dbfile)
ncrvs = md.GetNumCurves()
cnames = [md.GetCurves(i).name for i in xrange(ncrvs)]
cnames.sort()
for cname in cnames:
visit.AddPlot("Curve", cname)
visit.DrawPlots()
def setup_visit(plot_variable_data, db_name):
print 'Opening database...'
# Get the complete database name including directory path, db file
# pattern and extension, followed by the word database
# Example: db_filename = './output*.vtk database'
visit.OpenDatabase(db_name)
# Getting the list of current variables
db_meta_data = visit.GetMetaData(db_name)
scalar_list = [
db_meta_data.GetScalars(i).name
for i in range(db_meta_data.GetNumScalars())
]
vector_list = [
db_meta_data.GetVectors(i).name
for i in range(db_meta_data.GetNumVectors())
]
for vec in vector_list:
scalar_list.append(vec + '_magnitude')
# Check if current variable name exists in the database. If no, then
# res becomes 0. Hence, we need to define a scalar expression for the
# current variable
if plot_variable_data['plot variable'] in scalar_list or \
plot_variable_data['plot variable'] in vector_list:
visit.AddPlot(plot_variable_data['plot type'], \
plot_variable_data['plot variable'])
else:
print 'No existing variable of that name'
visit.DefineScalarExpression(plot_variable_data['plot variable'], \
plot_variable_data['plot variable definition'])
visit.AddPlot(plot_variable_data['plot type'], \
plot_variable_data['plot variable'])
# Making mesh transparent and overlaying it on the plot
visit.AddPlot('Mesh', 'mesh')
p = visit.MeshAttributes()
p.SetOpacity(0.25)
visit.SetPlotOptions(p)
def test_python(self):
visit.OpenDatabase(db)
visit.AddPlot("Pseudocolor", "d")
visit.DrawPlots()
exprs.clear()
exprs.define_python("test_vpe", file=vpe_file, args=["d"])
visit.Query("Max")
r1 = visit.GetQueryOutputValue()
visit.ChangeActivePlotsVar("test_vpe")
visit.Query("Max")
r2 = visit.GetQueryOutputValue()
visit.ChangeActivePlotsVar("d")
self.assertTrue(r1 * r1 - r2 < 1e-2)
exprs.clear()
visit.DeleteAllPlots()
visit.CloseDatabase(db)
def _plot_pseudocolor(self):
"""Plots the data on a pseudocolor plot to use."""
# add the pseudocolor plot to contour
v.AddPlot("Pseudocolor", self.data)
att = v.PseudocolorAttributes()
# min/max for the pseudocolor plot
att.minFlag = True
att.min = self.minN
att.maxFlag = True
att.max = self.maxN
# plot
v.SetPlotOptions(att)
v.DrawPlots()
def plotEnergy(localPowerAllDB):
# Get upper and lower limits for energy plots
h5in = tables.open_file(localPowerAllDB, 'r')
minZ = h5in.root.zSeries._v_attrs.vsLowerBounds
maxZ = h5in.root.zSeries._v_attrs.vsUpperBounds
h5in.close()
data = visit.OpenDatabase(localPowerAllDB, 0, 'Vs')
visit.AddPlot('Curve', 'Energy', 1, 1) # For log scale equivalent plot
ViewCurveAtts = visit.ViewCurveAttributes()
ViewCurveAtts.domainScale = ViewCurveAtts.LINEAR # LINEAR, LOG
ViewCurveAtts.rangeScale = ViewCurveAtts.LOG # LINEAR, LOG
visit.SetViewCurve(ViewCurveAtts)
visit.DrawPlots()
ViewCurveAtts.domainCoords = (minZ, maxZ)
ViewCurveAtts.rangeCoords = (-12, 2)
ViewCurveAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
visit.SetViewCurve(ViewCurveAtts)
visit.DrawPlots()
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.axes2D.yAxis.grid = 1
AnnotationAtts.axes2D.xAxis.grid = 1
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "z"
AnnotationAtts.axes2D.xAxis.title.units = "m"
AnnotationAtts.axes2D.yAxis.title.userTitle = 1
AnnotationAtts.axes2D.yAxis.title.userUnits = 1
AnnotationAtts.axes2D.yAxis.title.title = "Energy"
AnnotationAtts.axes2D.yAxis.title.units = "J"
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.databaseInfoFlag = 0
AnnotationAtts.legendInfoFlag = 0
visit.SetAnnotationAttributes(AnnotationAtts)
visit.DrawPlots()
CurveAtts = visit.CurveAttributes()
CurveAtts.showLines = 1
CurveAtts.lineStyle = CurveAtts.SOLID # SOLID, DASH, DOT, DOTDASH
CurveAtts.lineWidth = 2
CurveAtts.curveColorSource = CurveAtts.Custom # Cycle, Custom
CurveAtts.curveColor = (51, 153, 102, 255)
CurveAtts.showLegend = 0
CurveAtts.showLabels = 0
visit.SetPlotOptions(CurveAtts)
def current():
visit.OpenDatabase(iDB, 0)
visit.AddPlot("Curve", "beamCurrent", 1, 1)
visit.DrawPlots()
# Begin spontaneous state
ViewCurveAtts = visit.ViewCurveAttributes()
ViewCurveAtts.domainCoords = (-0.0240932, 29.972)
ViewCurveAtts.rangeCoords = (0, 22000)
ViewCurveAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
ViewCurveAtts.domainScale = ViewCurveAtts.LINEAR # LINEAR, LOG
ViewCurveAtts.rangeScale = ViewCurveAtts.LINEAR # LINEAR, LOG
visit.SetViewCurve(ViewCurveAtts)
# End spontaneous state
ViewCurveAtts = visit.ViewCurveAttributes()
ViewCurveAtts.domainCoords = (-0.0240932, 29.972)
ViewCurveAtts.rangeCoords = (0, 22000)
ViewCurveAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
ViewCurveAtts.domainScale = ViewCurveAtts.LINEAR # LINEAR, LOG
ViewCurveAtts.rangeScale = ViewCurveAtts.LINEAR # LINEAR, LOG
visit.SetViewCurve(ViewCurveAtts)
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.axes2D.yAxis.grid = 0
AnnotationAtts.axes2D.xAxis.grid = 0
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "z2bar"
AnnotationAtts.axes2D.xAxis.title.units = "cooperation lengths"
AnnotationAtts.axes2D.yAxis.title.userTitle = 1
AnnotationAtts.axes2D.yAxis.title.userUnits = 1
AnnotationAtts.axes2D.yAxis.title.title = "Current"
AnnotationAtts.axes2D.yAxis.title.units = "A"
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.databaseInfoFlag = 0
AnnotationAtts.legendInfoFlag = 0
visit.SetAnnotationAttributes(AnnotationAtts)
CurveAtts = visit.CurveAttributes()
CurveAtts.showLines = 1
CurveAtts.lineStyle = CurveAtts.SOLID # SOLID, DASH, DOT, DOTDASH
CurveAtts.lineWidth = 2
CurveAtts.curveColorSource = CurveAtts.Custom # Cycle, Custom
CurveAtts.curveColor = (51, 153, 102, 255)
CurveAtts.showLegend = 0
CurveAtts.showLabels = 0
visit.SetPlotOptions(CurveAtts)
def PhaseSpace(x1, x2, dumpNo):
visit.AddWindow()
ScatAttrs = visit.ScatterAttributes()
ScatAttrs.var1 = x1
ScatAttrs.var2 = x2
# ScatAttrs.var1Role = visit.ScatterAtts.Coordinate0
# ScatAttrs.var2Role = visit.ScatterAtts.Coordinate1
# ScatAttrs.var3Role = visit.ScatterAtts.None
# ScatAttsr.var4Role = visit.ScatterAtts.None
ScatAttrs.SetVar1Role(0) #coord 0
ScatAttrs.SetVar2Role(1) #coord 1
ScatAttrs.SetVar3Role(4) #none
ScatAttrs.SetVar4Role(4) #none
ScatAttrs.scaleCube = 0
visit.AddPlot('Scatter', x1, 1, 1)
visit.SetPlotOptions(ScatAttrs)
visit.SetTimeSliderState(dumpNo)
visit.DrawPlots()
def LoadExtremeValueAnalysisPlot(self):
(windowid,filename,var) = self.GetDetails()
if windowid is None: return
wid = viswinmapper[windowid]
visit.SetActiveWindow(wid)
visit.DeleteAllPlots()
visit.OpenDatabase(filename, 0)
visit.AddPlot("Pseudocolor", var, 1, 1)
#visit.AddOperator("Box", 1)
#visit.SetActivePlots(0)
#visit.SetActivePlots(0)
#BoxAtts = visit.BoxAttributes()
#BoxAtts.amount = BoxAtts.Some # Some, All
#BoxAtts.minx = 90
#BoxAtts.maxx = 100
#BoxAtts.miny = -10
#BoxAtts.maxy = 10
#BoxAtts.minz = 0
#BoxAtts.maxz = 1
#visit.SetOperatorOptions(BoxAtts, 1)
visit.AddOperator("ExtremeValueAnalysis")
visit.DrawPlots()
def test_get_isovol_nodata():
"""test get_isovol no data present"""
r = np.full(6, False)
db = test_dir + "/test-isovol-nodata/"
iv = ivdb.IvDb(levels=[5, 15, 25, 28, 35], data=data, db=db)
if isdir(db):
shutil.rmtree(db)
mkdir(db)
mkdir(db + '/vols/')
# launch VisIt
import visit
try:
visit.LaunchNowin()
except:
pass
visit.OpenDatabase(test_mesh)
visit.AddPlot('Pseudocolor', data)
# run __get_isovol
lbound = 25
ubound = 28
i = 3
with warnings.catch_warnings(record=True) as w:
export_res, ubound_out = iv._IvDb__get_isovol(lbound, ubound, i)
# close VisIt
visit.CloseComputeEngine()
# check returned/changed values
if export_res == 0:
r[0] = True
if ubound_out == 35:
r[1] = True
if iv.levels == [5, 15, 25, 35]:
r[2] = True
gen_vol = db + "/vols/3.stl"
if not isfile(gen_vol):
# no file should be generated
r[3] = True
r[4:6] = __check_warning(w, ["no data to export between"], 1)
shutil.rmtree(db)
assert (all(r))
def surfIntens(fDB):
visit.OpenDatabase(fDB, 0)
visit.AddPlot("Pseudocolor", "operators/DataBinning/2D/meshScaled", 1, 1)
DataBinningAtts = visit.DataBinningAttributes()
DataBinningAtts.numDimensions = DataBinningAtts.Two # One, Two, Three
DataBinningAtts.dim1BinBasedOn = DataBinningAtts.X # X, Y, Z, Variable
DataBinningAtts.dim1Var = "default"
DataBinningAtts.dim1SpecifyRange = 0
DataBinningAtts.dim1MinRange = 0
DataBinningAtts.dim1MaxRange = 1
DataBinningAtts.dim1NumBins = 85
DataBinningAtts.dim2BinBasedOn = DataBinningAtts.Y # X, Y, Z, Variable
DataBinningAtts.dim2Var = "default"
DataBinningAtts.dim2SpecifyRange = 0
DataBinningAtts.dim2MinRange = 0
DataBinningAtts.dim2MaxRange = 1
DataBinningAtts.dim2NumBins = 85
DataBinningAtts.dim3BinBasedOn = DataBinningAtts.Variable # X, Y, Z, Variable
DataBinningAtts.dim3Var = "default"
DataBinningAtts.dim3SpecifyRange = 0
DataBinningAtts.dim3MinRange = 0
DataBinningAtts.dim3MaxRange = 1
DataBinningAtts.dim3NumBins = 50
DataBinningAtts.outOfBoundsBehavior = DataBinningAtts.Clamp # Clamp, Discard
DataBinningAtts.reductionOperator = DataBinningAtts.Average # Average, Minimum, Maximum, StandardDeviation, Variance, Sum, Count, RMS, PDF
DataBinningAtts.varForReduction = "intensityScaled"
DataBinningAtts.emptyVal = 0
DataBinningAtts.outputType = DataBinningAtts.OutputOnBins # OutputOnBins, OutputOnInputMesh
DataBinningAtts.removeEmptyValFromCurve = 1
visit.SetOperatorOptions(DataBinningAtts, 1)
View2DAtts = visit.View2DAttributes()
View2DAtts.fullFrameActivationMode = View2DAtts.On
# View2DAtts.fullFrameAutoThreshold = 100
visit.SetView2D(View2DAtts)
visit.ResetView()
PseudocolorAtts = visit.PseudocolorAttributes()
PseudocolorAtts.centering = PseudocolorAtts.Nodal # Natural, Nodal, Zonal
visit.SetPlotOptions(PseudocolorAtts)
visit.DrawPlots()
def bunching():
#visit.OpenDatabase("localhost:/home/tml/tmp/test/build/examples/simple/1D/OptCommV165pp65-70/fig2/f2main_bunching1st_0_* database", 0)
visit.OpenDatabase(iDB, 0)
visit.AddPlot("Curve", "bunchingFundamental", 1, 1)
visit.SetTimeSliderState(0)
# Begin spontaneous state
ViewCurveAtts = visit.ViewCurveAttributes()
ViewCurveAtts.domainCoords = (0, 29.8745)
ViewCurveAtts.rangeCoords = (0, 0.75)
ViewCurveAtts.viewportCoords = (0.2, 0.95, 0.15, 0.95)
ViewCurveAtts.domainScale = ViewCurveAtts.LINEAR # LINEAR, LOG
ViewCurveAtts.rangeScale = ViewCurveAtts.LINEAR # LINEAR, LOG
visit.SetViewCurve(ViewCurveAtts)
AnnotationAtts = visit.AnnotationAttributes()
AnnotationAtts.axes2D.yAxis.grid = 0
AnnotationAtts.axes2D.xAxis.grid = 0
AnnotationAtts.axes2D.xAxis.title.userTitle = 1
AnnotationAtts.axes2D.xAxis.title.userUnits = 1
AnnotationAtts.axes2D.xAxis.title.title = "z2bar"
AnnotationAtts.axes2D.xAxis.title.units = "cooperation lengths"
AnnotationAtts.axes2D.yAxis.title.userTitle = 1
AnnotationAtts.axes2D.yAxis.title.userUnits = 1
AnnotationAtts.axes2D.yAxis.title.title = "bunching"
AnnotationAtts.axes2D.yAxis.title.units = ""
AnnotationAtts.userInfoFlag = 0
AnnotationAtts.databaseInfoFlag = 0
AnnotationAtts.legendInfoFlag = 0
visit.SetAnnotationAttributes(AnnotationAtts)
CurveAtts = visit.CurveAttributes()
CurveAtts.showLines = 1
CurveAtts.lineStyle = CurveAtts.SOLID # SOLID, DASH, DOT, DOTDASH
CurveAtts.lineWidth = 2
CurveAtts.curveColorSource = CurveAtts.Custom # Cycle, Custom
CurveAtts.curveColor = (51, 153, 102, 255)
CurveAtts.showLegend = 0
CurveAtts.showLabels = 0
visit.SetPlotOptions(CurveAtts)
visit.DrawPlots()
def main():
args = Argv()
wfile = args[0]
dbfile = pjoin("tests","_data","rect2d.silo")
fset = "pyocl_ops"
plat = 0
dev = 0
if len(args) > 1:
dbfile = args[1]
if len(args) > 2:
fset = args[2]
if len(args) > 3:
plat = int(args[3])
if len(args) > 4:
dev = int(args[4])
visit.OpenDatabase(dbfile)
define_flow_vpe("flow",
expr=wfile,
filter_set=fset,
platform_id=plat,
device_id=dev)
visit.AddPlot("Pseudocolor","flow")
visit.DrawPlots()
def scatterPlot(self,
coords=["var00", "var01", "var02", "var03"],
colorTable="hot",
pixelSize=5,
stay=False):
visit.AddWindow()
if len(visit.ListPlots()) > 0:
visit.SetActivePlots(0)
visit.HideActivePlots()
plot = visit.AddPlot("Scatter", coords[0])
p = visit.ScatterAttributes()
# Variables
if coords[1]:
p.var2 = coords[1]
if coords[2]:
p.var3 = coords[2]
if coords[3]:
p.var4 = coords[3]
#Role Variable Roles take intergers as inputs, not strings
p.var1Role = 0
p.var2Role = 1
p.var3Role = 2
p.var4Role = 3
p.scaleCube = 0
#p.colorType = "ColorByColorTable"
p.pointSizePixels = pixelSize
p.colorTableName = colorTable
#p.colorScaling = "Log"
v = visit.GetView3D()
v.viewNormal = (-0.571619, 0.405393, 0.713378)
v.viewUp = (0.308049, 0.911853, -0.271346)
visit.SetPlotOptions(p)
visit.SetView3D(v)
visit.DrawPlots()
count = 0
time.sleep(5)
return visit.SaveWindow()
with open('example.silo', 'wb') as f:
f.write(response.read())
print("Successfully downloaded example silo")
visit.LaunchNowin()
saveatts = visit.SaveWindowAttributes()
saveatts.fileName = 'result-visit.png'
saveatts.family = 0
saveatts.width = 1024
saveatts.height = 768
saveatts.resConstraint = saveatts.NoConstraint
saveatts.outputToCurrentDirectory = 1
visit.SetSaveWindowAttributes(saveatts)
visit.OpenDatabase('example.silo')
visit.AddPlot('Contour', 'density')
c = visit.ContourAttributes()
c.colorType = c.ColorByColorTable
c.colorTableName = "hot"
visit.SetPlotOptions(c)
visit.DrawPlots()
v = visit.GetView3D()
v.viewNormal = (-0.554924, 0.703901, 0.443377)
v.viewUp = (0.272066, -0.3501, 0.896331)
visit.SetView3D(v)
visit.SaveWindow()
visit.DeleteAllPlots()
visit.CloseDatabase('example.silo')
print("Successfully rendered output raster")