def test_experiment(
initial_biomass=1000,
total_time=2000,
):
agent_id = '1'
parameters = {
'agent_id': agent_id,
'inclusion_process': {
'damage_rate': 1e-4, # rapid damage
},
'growth_rate': {
'growth_rate': 0.001 # fast growth
},
}
# make the agent
agent_composer = InclusionBodyGrowth(parameters)
agent_composite = agent_composer.generate()
# make the environment
composer = Lattice(LATTICE_CONFIG)
composite = composer.generate()
# merge in the agent
composite.merge(composite=agent_composite, path=('agents', agent_id))
# get initial state
initial_state = composite.initial_state()
initial_state['agents'][agent_id]['molecules'] = {
'biomass': initial_biomass
}
# make the experiment
inclusion_experiment = Experiment({
'processes': composite['processes'],
'topology': composite['topology'],
'initial_state': initial_state
})
# run the experiment
inclusion_experiment.update(total_time)
# get the data
data = inclusion_experiment.emitter.get_data()
return data
def test_inclusion_body(
total_time=1000,
initial_biomass=1000,
):
agent_id = '0'
parameters = {
'agent_id': agent_id,
'inclusion_process': {
'damage_rate': 1e-4, # rapid damage
},
'growth_rate': {
'growth_rate': 0.001 # fast growth
},
}
composer = InclusionBodyGrowth(parameters)
composite = composer.generate(path=('agents', agent_id))
initial_state = composite.initial_state()
initial_state['agents'][agent_id]['molecules'] = {
'biomass': initial_biomass
}
# make the experiment
inclusion_experiment = Experiment({
'processes': composite['processes'],
'topology': composite['topology'],
'initial_state': initial_state
})
# run the experiment
inclusion_experiment.update(total_time)
# get the data
data = inclusion_experiment.emitter.get_data()
return data