def main(filenames, input_format='json', outfile="~/out.txt"):
"""
Parse PCBA assay descriptions.
Parameters
----------
filenames : list
Filenames containing assay descriptions.
input_format : str, optional (default 'json')
Input file format.
"""
for filename in filenames:
if input_format == 'json':
handler = PcbaPandasHandler()
handler.add_dataset(filename)
else:
raise NotImplementedError(
'Unrecognized input format "{}"'.format(input_format))
handler.write(out_file)
def setUp(self):
self.handler = PcbaPandasHandler()
self.data_dir = os.path.split(os.path.realpath(__file__))[0]
self.parser = PcbaJsonParser(
os.path.join(self.data_dir, 'data/aid1.json'))
