def test_valid(self):
"""Test loading valid settings"""
mySettings = settings.loadf(os.path.join(self.data, self.valid))
self.assertEqual(mySettings.barcode_format, "BBBNNNNBB")
self.assertEqual(mySettings.barcodes, {
"sample 1": "ACCTA",
"sample 2": "GCGAT"
})
self.assertEqual(mySettings.discard, [
('test/data/tophat_data/test_ref' , {'max_insertion_length':4,},),
('test/data/tophat_data/test_ref_two', {'max_insertion_length':5,},),
])
self.assertEqual(mySettings.target,
('test/data/tophat_data/test_ref', {'max_insertion_length':3,}))
def setUp(self): self.settings = settings.loadf(self.data)
