Ejemplo n.º 1
0
def taxonomic_coverage_select(filename=None):
    form = TaxonomicCoverageSelectForm(filename=filename)

    # Process POST
    if request.method == 'POST':
        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        url = select_post(filename, form, form_dict, 'POST',
                          PAGE_TAXONOMIC_COVERAGE_SELECT,
                          PAGE_TEMPORAL_COVERAGE_SELECT, PAGE_MAINTENANCE,
                          PAGE_TAXONOMIC_COVERAGE)
        return redirect(url)

    # Process GET
    title = "Taxonomic Coverage"
    txc_list = []

    eml_node = load_eml(filename=filename)
    if eml_node:
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            txc_list = list_taxonomic_coverages(dataset_node)

    set_current_page('taxonomic_coverage')
    help = [get_help('taxonomic_coverages')]
    return render_template('taxonomic_coverage_select.html',
                           title=title,
                           txc_list=txc_list,
                           form=form,
                           help=help)
Ejemplo n.º 2
0
def contact(filename=None, node_id=None):
    method = request.method
    set_current_page('contact')
    return responsible_party(filename=filename, node_id=node_id,
                             method=method, node_name=names.CONTACT,
                             back_page=PAGE_CONTACT_SELECT, next_page=PAGE_CONTACT_SELECT,
                             title='Contact')
Ejemplo n.º 3
0
def data_package_id(filename=None):
    form = DataPackageIDForm()
    eml_node = load_eml(filename=filename)

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            data_package_id = form.data_package_id.data
            create_data_package_id(data_package_id, filename)
            set_active_packageid(data_package_id)
            form.md5.data = form_md5(form)

        new_page = PAGE_TITLE
        this_page = PAGE_DATA_PACKAGE_ID
        new_page = handle_hidden_buttons(new_page, this_page)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    data_package_id = eml_node.attribute_value('packageId')
    form.data_package_id.data = data_package_id if data_package_id else ''
    form.md5.data = form_md5(form)

    set_current_page('data_package_id')
    help = get_helps(['data_package_id'])
    return render_template('data_package_id.html',
                           form=form,
                           help=help,
                           title='Data Package ID')
Ejemplo n.º 4
0
def geographic_coverage_select(filename=None):
    form = GeographicCoverageSelectForm(filename=filename)

    # Process POST
    if request.method == 'POST':
        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        url = select_post(filename, form, form_dict, 'POST',
                          PAGE_GEOGRAPHIC_COVERAGE_SELECT,
                          PAGE_INTELLECTUAL_RIGHTS,
                          PAGE_TEMPORAL_COVERAGE_SELECT,
                          PAGE_GEOGRAPHIC_COVERAGE)
        return redirect(url)

    # Process GET
    gc_list = []
    title = "Geographic Coverage"

    eml_node = load_eml(filename=filename)
    if eml_node:
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            gc_list = list_geographic_coverages(dataset_node)

    set_current_page('geographic_coverage')
    help = get_helps(['geographic_coverages', 'geographic_coverages_csv_file'])
    return render_template('geographic_coverage_select.html',
                           title=title,
                           gc_list=gc_list,
                           form=form,
                           help=help)
Ejemplo n.º 5
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def creator(filename=None, node_id=None):
    method = request.method
    set_current_page('creator')
    return responsible_party(filename=filename, node_id=node_id,
                             method=method, node_name=names.CREATOR,
                             back_page=PAGE_CREATOR_SELECT,
                             next_page=PAGE_CREATOR_SELECT,
                             title='Creator')
Ejemplo n.º 6
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def associated_party(filename=None, node_id=None):
    method = request.method
    set_current_page('associated_party')
    return responsible_party(filename=filename, node_id=node_id,
                             method=method, node_name=names.ASSOCIATEDPARTY,
                             back_page=PAGE_ASSOCIATED_PARTY_SELECT,
                             next_page=PAGE_ASSOCIATED_PARTY_SELECT,
                             title='Associated Party')
Ejemplo n.º 7
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def metadata_provider(filename=None, node_id=None):
    method = request.method
    set_current_page('metadata_provider')
    return responsible_party(filename=filename, node_id=node_id,
                             method=method, node_name=names.METADATAPROVIDER,
                             back_page=PAGE_METADATA_PROVIDER_SELECT,
                             next_page=PAGE_METADATA_PROVIDER_SELECT,
                             title='Metadata Provider')
Ejemplo n.º 8
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def project_personnel(filename=None, node_id=None, project_node_id=None):
    method = request.method
    set_current_page('project')
    return responsible_party(filename=filename, node_id=node_id,
                             method=method, node_name=names.PERSONNEL,
                             back_page=PAGE_PROJECT_PERSONNEL_SELECT,
                             next_page=PAGE_PROJECT_PERSONNEL_SELECT,
                             title='Project Personnel',
                             project_node_id=project_node_id)
Ejemplo n.º 9
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def render_get_maintenance_page(eml_node, form, filename):
    set_current_page('maintenance')
    help = [get_help('maintenance'), get_help('maintenance_description'), get_help('maintenance_freq')]
    return render_template('maintenance.html',
                           title='Maintenance',
                           filename=filename,
                           model_has_complex_texttypes=model_has_complex_texttypes(eml_node),
                           form=form,
                           help=help)
Ejemplo n.º 10
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def render_get_abstract_page(form, filename):
    eml_node = load_eml(filename)
    form.md5.data = form_md5(form)
    set_current_page('abstract')
    help = [get_help('abstract'), get_help('nav')]
    return render_template(
        'abstract.html',
        title='Abstract',
        model_has_complex_texttypes=model_has_complex_texttypes(eml_node),
        filename=filename,
        form=form,
        help=help)
Ejemplo n.º 11
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def publication_info(filename=None):
    form = PublicationInfoForm()

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        if 'Next' in request.form:
            new_page = PAGE_METHOD_STEP_SELECT
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_PUBLICATION_INFO
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE
        else:
            new_page = PAGE_PUBLISHER

        save = False
        if is_dirty_form(form):
            save = True

        if save:
            pubplace = form.pubplace.data
            pubdate = form.pubdate.data
            create_pubinfo(pubplace=pubplace,
                           pubdate=pubdate,
                           filename=filename)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    pubplace_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.PUBPLACE])
    if pubplace_node:
        form.pubplace.data = pubplace_node.content
    pubdate_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.PUBDATE])
    if pubdate_node:
        form.pubdate.data = pubdate_node.content
    form.md5.data = form_md5(form)
    set_current_page('publication_info')
    help = get_helps(['pubplace', 'pubdate'])
    return render_template('publication_info.html',
                           help=help,
                           form=form,
                           title='Publication Info')
Ejemplo n.º 12
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def render_get_intellectual_rights_page(form, filename, font_family):
    eml_node = load_eml(filename)
    form.md5.data = form_md5(form)
    set_current_page('intellectual_rights')
    help = [get_help('intellectual_rights')]

    return render_template(
        'intellectual_rights.html',
        title='Intellectual Rights',
        font_family=font_family,
        model_has_complex_texttypes=model_has_complex_texttypes(eml_node),
        filename=filename,
        form=form,
        help=help)
Ejemplo n.º 13
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def render_get_method_step_page(eml_node, form, filename):
    set_current_page('method_step')
    help = [
        get_help('method_step_description'),
        get_help('method_step_instrumentation'),
        get_help('method_step_data_sources')
    ]
    return render_template(
        'method_step.html',
        title='Method Step',
        model_has_complex_texttypes=model_has_complex_texttypes(eml_node),
        form=form,
        filename=filename,
        help=help)
Ejemplo n.º 14
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def title(filename=None):
    form = TitleForm()

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        new_page = PAGE_DATA_TABLE_SELECT
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            create_title(title=form.title.data, filename=filename)
            form.md5.data = form_md5(form)

        if 'Next' in request.form:
            new_page = PAGE_DATA_TABLE_SELECT
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_TITLE
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    dataset_node = eml_node.find_child(child_name=names.DATASET)
    title_node = dataset_node.find_child(names.TITLE)
    if title_node:
        form.title.data = title_node.content
    form.md5.data = form_md5(form)

    set_current_page('title')
    help = get_helps(['title', 'nav', 'welcome'])
    first_usage = is_first_usage()
    return render_template('title.html',
                           title='Title',
                           form=form,
                           help=help,
                           is_first_usage=first_usage)
Ejemplo n.º 15
0
def publisher(filename=None):
    method = request.method
    node_id = '1'
    if filename:
        eml_node = load_eml(filename=filename)
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            publisher_node = dataset_node.find_child(names.PUBLISHER)
            if publisher_node:
                node_id = publisher_node.id
    set_current_page('publisher')
    help = [get_help('publisher')]
    return responsible_party(filename=filename, node_id=node_id,
                             method=method, node_name=names.PUBLISHER,
                             back_page=PAGE_CONTACT_SELECT, title='Publisher',
                             next_page=PAGE_PUBLICATION_INFO,
                             save_and_continue=True, help=help)
Ejemplo n.º 16
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def creator_select(filename=None):
    form = ResponsiblePartySelectForm(filename=filename)

    # Process POST
    if request.method == 'POST':
        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        url = select_post(filename, form, form_dict,
                          'POST', PAGE_CREATOR_SELECT, PAGE_TITLE,
                          PAGE_CONTACT_SELECT, PAGE_CREATOR)
        return redirect(url)

    # Process GET
    set_current_page('creator')
    help = [get_help('creators')]
    return rp_select_get(filename=filename, form=form, rp_name=names.CREATOR,
                         rp_singular='Creator', rp_plural='Creators', help=help)
Ejemplo n.º 17
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def contact_select(filename=None):
    form = ResponsiblePartySelectForm(filename=filename)

    # Process POST
    if request.method == 'POST':
        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        url = select_post(filename, form, form_dict,
                          'POST', PAGE_CONTACT_SELECT, PAGE_CREATOR_SELECT,
                          PAGE_ASSOCIATED_PARTY_SELECT, PAGE_CONTACT)
        return redirect(url)

    # Process GET
    set_current_page('contact')
    help = [get_help('contacts')]
    return rp_select_get(filename=filename, form=form, rp_name='contact',
                         rp_singular='Contact', rp_plural='Contacts', help=help)
Ejemplo n.º 18
0
def data_package_id(filename=None):
    form = DataPackageIDForm()
    eml_node = load_eml(filename=filename)

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':
        new_page = PAGE_TITLE
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            data_package_id = form.data_package_id.data
            create_data_package_id(data_package_id, filename)
            set_active_packageid(data_package_id)
            form.md5.data = form_md5(form)

        if 'Next' in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_DATA_PACKAGE_ID
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    data_package_id = eml_node.attribute_value('packageId')
    form.data_package_id.data = data_package_id if data_package_id else ''
    form.md5.data = form_md5(form)

    set_current_page('data_package_id')
    help = get_helps(['data_package_id'])
    return render_template('data_package_id.html',
                           form=form,
                           help=help,
                           title='Data Package ID')
Ejemplo n.º 19
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def related_project_select_get(filename=None, form=None):
    # Process GET
    project_list = []
    title = 'Related Projects'
    eml_node = load_eml(filename=filename)

    if eml_node:
        project_list = list_related_projects(eml_node)

    set_current_page('project')
    help = [get_help('related_project')]
    return render_template('related_project_select.html',
                           title=title,
                           filename=filename,
                           project_list=project_list,
                           form=form,
                           help=help)
Ejemplo n.º 20
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def funding_award_select_get(filename=None, form=None, node_id=None):
    # Process GET
    title = 'Funding Awards'
    # entity_name = ''
    eml_node = load_eml(filename=filename)

    funding_award_list = list_funding_awards(eml_node, node_id)
    set_current_page('project')
    related_project = node_id is not None
    help = [get_help('awards')]
    return render_template('award_select.html',
                           title=title,
                           filename=filename,
                           award_list=funding_award_list,
                           form=form,
                           help=help,
                           related_project=related_project)
Ejemplo n.º 21
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def keyword_select_get(filename=None, form=None):
    # Process GET
    kw_list = []
    title = 'Keywords'
    eml_node = load_eml(filename=filename)

    if eml_node:
        kw_list = list_keywords(eml_node)

    set_current_page('keyword')
    help = [get_help('keywords')]
    return render_template('keyword_select.html',
                           title=title,
                           filename=filename,
                           kw_list=kw_list,
                           form=form,
                           help=help)
Ejemplo n.º 22
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def render_get_project_page(eml_node, form, filename, doing_related_project,
                            project_node_id):
    set_current_page('project')
    if not doing_related_project:
        help = [get_help('project'), get_help('project_title')]
    else:
        help = [get_help('related_project'), get_help('project_title')]
    if not project_node_id:
        page_title = 'Project'
    else:
        page_title = 'Related Project'
    return render_template(
        'project.html',
        title=page_title,
        filename=filename,
        model_has_complex_texttypes=model_has_complex_texttypes(eml_node),
        form=form,
        help=help)
Ejemplo n.º 23
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def abstract(filename=None):
    form = AbstractForm(filename=filename)

    # Process POST
    if request.method == 'POST':
        if 'Next' in request.form:
            new_page = PAGE_KEYWORD_SELECT
        elif BTN_HIDDEN_CHECK in request.form:
            new_page = PAGE_CHECK
        elif BTN_HIDDEN_SAVE in request.form:
            new_page = PAGE_ABSTRACT
        elif BTN_HIDDEN_DOWNLOAD in request.form:
            new_page = PAGE_DOWNLOAD
        elif BTN_HIDDEN_NEW in request.form:
            new_page = PAGE_CREATE
        elif BTN_HIDDEN_OPEN in request.form:
            new_page = PAGE_OPEN
        elif BTN_HIDDEN_CLOSE in request.form:
            new_page = PAGE_CLOSE
        else:
            submit_type = None
            new_page = PAGE_KEYWORD_SELECT

        if form.validate_on_submit():
            if is_dirty_form(form):
                abstract = add_paragraph_tags(form.abstract.data)
                create_abstract(filename=filename, abstract=abstract)
            return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    abstract_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.ABSTRACT])
    if abstract_node:
        form.abstract.data = remove_paragraph_tags(abstract_node.content)
    form.md5.data = form_md5(form)
    set_current_page('abstract')
    help = [get_help('abstract'), get_help('nav')]
    return render_template('abstract.html',
                           title='Abstract',
                           filename=filename,
                           form=form,
                           help=help)
Ejemplo n.º 24
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def metadata_provider_select(filename=None):
    form = ResponsiblePartySelectForm(filename=filename)

    # Process POST
    if request.method == 'POST':
        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        url = select_post(filename, form, form_dict,
                          'POST', PAGE_METADATA_PROVIDER_SELECT,
                          PAGE_ASSOCIATED_PARTY_SELECT, PAGE_ABSTRACT,
                          PAGE_METADATA_PROVIDER)
        return redirect(url)

    # Process GET
    set_current_page('metadata_provider')
    help = [get_help('metadata_providers')]
    return rp_select_get(filename=filename, form=form,
                         rp_name=names.METADATAPROVIDER,
                         rp_singular=non_breaking('Metadata Provider'),
                         rp_plural=non_breaking('Metadata Providers'), help=help)
Ejemplo n.º 25
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def publication_info(filename=None):
    form = PublicationInfoForm()

    # Process POST
    # if request.method == 'POST' and form.validate_on_submit():
    if request.method == 'POST':

        new_page = PAGE_METHOD_STEP_SELECT
        this_page = PAGE_PUBLICATION_INFO
        new_page = handle_hidden_buttons(new_page, this_page)

        save = False
        if is_dirty_form(form):
            save = True

        if save:
            pubplace = form.pubplace.data
            pubdate = form.pubdate.data
            create_pubinfo(pubplace=pubplace,
                           pubdate=pubdate,
                           filename=filename)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    pubplace_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.PUBPLACE])
    if pubplace_node:
        form.pubplace.data = pubplace_node.content
    pubdate_node = eml_node.find_single_node_by_path(
        [names.DATASET, names.PUBDATE])
    if pubdate_node:
        form.pubdate.data = pubdate_node.content
    form.md5.data = form_md5(form)
    set_current_page('publication_info')
    help = get_helps(['pubplace', 'pubdate'])
    return render_template('publication_info.html',
                           help=help,
                           form=form,
                           title='Publication Info')
Ejemplo n.º 26
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def associated_party_select(filename=None):
    form = ResponsiblePartySelectForm(filename=filename)

    # Process POST
    if request.method == 'POST':
        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        url = select_post(filename, form, form_dict,
                          'POST', PAGE_ASSOCIATED_PARTY_SELECT,
                          PAGE_CONTACT_SELECT,
                          PAGE_METADATA_PROVIDER_SELECT,
                          PAGE_ASSOCIATED_PARTY)
        return redirect(url)

    # Process GET
    set_current_page('associated_party')
    help = [get_help('associated_parties')]
    return rp_select_get(filename=filename, form=form,
                         rp_name=names.ASSOCIATEDPARTY,
                         rp_singular=non_breaking('Associated Party'),
                         rp_plural=non_breaking('Associated Parties'), help=help)
Ejemplo n.º 27
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def title(filename=None):
    log_info(f'Title')

    form = TitleForm()

    # Process POST
    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True

        if save:
            create_title(title=form.title.data, filename=filename)
            form.md5.data = form_md5(form)

        new_page = PAGE_DATA_TABLE_SELECT
        this_page = PAGE_TITLE
        new_page = handle_hidden_buttons(new_page, this_page)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    eml_node = load_eml(filename=filename)
    dataset_node = eml_node.find_child(child_name=names.DATASET)
    title_node = dataset_node.find_child(names.TITLE)
    if title_node:
        form.title.data = title_node.content
    form.md5.data = form_md5(form)

    set_current_page('title')
    help = get_helps(['title', 'nav', 'welcome'])
    first_usage = is_first_usage()
    return render_template('title.html',
                           title='Title',
                           form=form,
                           help=help,
                           is_first_usage=first_usage)
Ejemplo n.º 28
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def taxonomic_coverage(filename=None, node_id=None, taxon=None):
    form = TaxonomicCoverageForm(filename=filename)

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_TAXONOMIC_COVERAGE_SELECT, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True
        # flash(f'save: {save}')

        form_value = request.form
        have_links = False

        if 'Fill' in form_value:
            source = form.taxonomic_authority.data
            if source == 'ITIS':
                source_type = TaxonomySourceEnum.ITIS
            elif source == 'NCBI':
                source_type = TaxonomySourceEnum.NCBI
            elif source == "WORMS":
                source_type = TaxonomySourceEnum.WORMS
            try:
                source_name = ''
                for choice in form.taxonomic_authority.choices:
                    if choice[0] == source:
                        source_name = choice[1]
                        break
                hierarchy = fill_taxonomic_coverage(form.taxon_value.data,
                                                    source_type, source_name)
                if hierarchy:
                    # set the taxon rank dropdown appropriately
                    rank = hierarchy[0][0].capitalize()
                    if (rank, rank) in form.taxon_rank.choices:
                        form.taxon_rank.data = rank
                    # see if we should display a Links column
                    for taxon in hierarchy:
                        if taxon[4]:
                            have_links = True
                            break
            except ValueError as e:
                flash(str(e))
                hierarchy = [(form.taxon_rank.data, form.taxon_value.data, '',
                              '')]
            form.hierarchy.data = hierarchy
            form.hidden_taxon_rank.data = form.taxon_rank.data
            form.hidden_taxon_value.data = form.taxon_value.data
            form.hidden_taxonomic_authority.data = form.taxonomic_authority.data
            help = get_helps(['taxonomic_coverage_fill_hierarchy'])

            return render_template(
                'taxonomic_coverage.html',
                title='Taxonomic Coverage',
                form=form,
                hierarchy=hierarchy,
                taxon_rank=form.taxon_rank.data,
                taxon_value=form.taxon_value.data,
                taxonomic_authority=form.taxonomic_authority.data,
                help=help,
                have_links=have_links)

        form_dict = form_value.to_dict(flat=False)
        new_page = PAGE_TAXONOMIC_COVERAGE_SELECT
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element

                if val == BTN_HIDDEN_NEW:
                    new_page = PAGE_CREATE
                    break
                elif val == BTN_HIDDEN_OPEN:
                    new_page = PAGE_OPEN
                    break
                elif val == BTN_HIDDEN_CLOSE:
                    new_page = PAGE_CLOSE
                    break

        if save:
            if not form.taxon_value.data and not form.taxon_rank.data:
                return redirect(url_for(new_page, filename=filename))

            submitted_hierarchy = form_value.get('hierarchy')
            if isinstance(form_value.get('hierarchy'),
                          str) and form_value.get('hierarchy'):
                # convert hierarchy string to list
                submitted_hierarchy = ast.literal_eval(
                    form_value.get('hierarchy'))
                form.hierarchy.data = submitted_hierarchy

            # if we're saving after doing 'Fill Hierarchy', fill in the values we've been passed
            if form_value.get('hidden_taxon_rank'):
                form.taxon_rank.data = form_value.get('hidden_taxon_rank')
                form.taxon_value.data = form_value.get('hidden_taxon_value')
                form.taxonomic_authority.data = form_value.get(
                    'hidden_taxonomic_authority')
            elif not submitted_hierarchy:
                # we don't have a hierarchy, so construct a fake hierarchy to be used by create_taxonomic_coverage()
                form.hierarchy.data = [(form_value.get('taxon_rank'),
                                        form_value.get('taxon_value'), '', '',
                                        '', '')]

            if not form_value.get('taxon_rank'):
                flash('Taxon Rank is required.')
                return redirect(
                    url_for(PAGE_TAXONOMIC_COVERAGE,
                            filename=filename,
                            node_id=node_id,
                            taxon=form.taxon_value.data))

            eml_node = load_eml(filename=filename)

            dataset_node = eml_node.find_child(names.DATASET)
            if not dataset_node:
                dataset_node = Node(names.DATASET)

            coverage_node = dataset_node.find_child(names.COVERAGE)
            if not coverage_node:
                coverage_node = Node(names.COVERAGE, parent=dataset_node)
                add_child(dataset_node, coverage_node)

            txc_node = Node(names.TAXONOMICCOVERAGE, parent=coverage_node)

            create_taxonomic_coverage(txc_node,
                                      form.general_taxonomic_coverage.data,
                                      form.hierarchy.data,
                                      form.taxonomic_authority.data)

            if node_id and len(node_id) != 1:
                old_txc_node = Node.get_node_instance(node_id)
                if old_txc_node:
                    coverage_parent_node = old_txc_node.parent
                    coverage_parent_node.replace_child(old_txc_node, txc_node)
                else:
                    msg = f"No node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(coverage_node, txc_node)

            save_both_formats(filename=filename, eml_node=eml_node)

        return redirect(url_for(new_page, filename=filename))

    # Process GET
    have_links = False
    if node_id == '1':
        form.init_md5()
        if taxon:
            form.taxon_value.data = taxon
    else:
        eml_node = load_eml(filename=filename)
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            coverage_node = dataset_node.find_child(names.COVERAGE)
            if coverage_node:
                txc_nodes = coverage_node.find_all_children(
                    names.TAXONOMICCOVERAGE)
                if txc_nodes:
                    for txc_node in txc_nodes:
                        if node_id == txc_node.id:
                            have_links = populate_taxonomic_coverage_form(
                                form, txc_node)

    help = get_helps(['taxonomic_coverage_fill_hierarchy'])

    set_current_page('taxonomic_coverage')
    return render_template('taxonomic_coverage.html',
                           title='Taxonomic Coverage',
                           form=form,
                           hierarchy=form.hierarchy.data,
                           have_links=have_links,
                           help=help)
Ejemplo n.º 29
0
def temporal_coverage(filename=None, node_id=None):
    form = TemporalCoverageForm(filename=filename)
    tc_node_id = node_id

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_TEMPORAL_COVERAGE_SELECT, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        save = False
        if is_dirty_form(form):
            save = True

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        new_page = PAGE_TEMPORAL_COVERAGE_SELECT
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element

                if val == BTN_HIDDEN_NEW:
                    new_page = PAGE_CREATE
                    break
                elif val == BTN_HIDDEN_OPEN:
                    new_page = PAGE_OPEN
                    break
                elif val == BTN_HIDDEN_CLOSE:
                    new_page = PAGE_CLOSE
                    break
        url = url_for(new_page, filename=filename)

        if save:
            eml_node = load_eml(filename=filename)

            dataset_node = eml_node.find_child(names.DATASET)
            if not dataset_node:
                dataset_node = Node(names.DATASET)

            coverage_node = dataset_node.find_child(names.COVERAGE)
            if not coverage_node:
                coverage_node = Node(names.COVERAGE, parent=dataset_node)
                add_child(dataset_node, coverage_node)

            tc_node = Node(names.TEMPORALCOVERAGE, parent=coverage_node)

            begin_date_str = form.begin_date.data
            end_date_str = form.end_date.data
            create_temporal_coverage(tc_node, begin_date_str, end_date_str)

            if node_id and len(node_id) != 1:
                old_tc_node = Node.get_node_instance(node_id)
                if old_tc_node:
                    coverage_parent_node = old_tc_node.parent
                    coverage_parent_node.replace_child(old_tc_node, tc_node)
                else:
                    msg = f"No node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(coverage_node, tc_node)

            tc_node_id = tc_node.id

            flash_msg = compare_begin_end_dates(begin_date_str, end_date_str)
            if flash_msg:
                flash(flash_msg)
                url = (url_for(PAGE_TEMPORAL_COVERAGE,
                               filename=filename,
                               node_id=tc_node_id))

            save_both_formats(filename=filename, eml_node=eml_node)

        return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        eml_node = load_eml(filename=filename)
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            coverage_node = dataset_node.find_child(names.COVERAGE)
            if coverage_node:
                tc_nodes = coverage_node.find_all_children(
                    names.TEMPORALCOVERAGE)
                if tc_nodes:
                    for tc_node in tc_nodes:
                        if node_id == tc_node.id:
                            populate_temporal_coverage_form(form, tc_node)

    set_current_page('temporal_coverage')
    return render_template('temporal_coverage.html',
                           title='Temporal Coverage',
                           form=form)
Ejemplo n.º 30
0
def geographic_coverage(filename=None, node_id=None):
    form = GeographicCoverageForm(filename=filename)

    # Process POST
    if request.method == 'POST' and BTN_CANCEL in request.form:
        url = url_for(PAGE_GEOGRAPHIC_COVERAGE_SELECT, filename=filename)
        return redirect(url)

    if request.method == 'POST' and form.validate_on_submit():
        submit_type = None
        if is_dirty_form(form):
            submit_type = 'Save Changes'

        form_value = request.form
        form_dict = form_value.to_dict(flat=False)
        new_page = PAGE_GEOGRAPHIC_COVERAGE_SELECT
        if form_dict:
            for key in form_dict:
                val = form_dict[key][0]  # value is the first list element

                if val == BTN_HIDDEN_NEW:
                    new_page = PAGE_CREATE
                    break
                elif val == BTN_HIDDEN_OPEN:
                    new_page = PAGE_OPEN
                    break
                elif val == BTN_HIDDEN_CLOSE:
                    new_page = PAGE_CLOSE
                    break

        url = url_for(new_page, filename=filename)

        if submit_type == 'Save Changes':
            eml_node = load_eml(filename=filename)

            dataset_node = eml_node.find_child(names.DATASET)
            if not dataset_node:
                dataset_node = Node(names.DATASET)

            coverage_node = dataset_node.find_child(names.COVERAGE)
            if not coverage_node:
                coverage_node = Node(names.COVERAGE, parent=dataset_node)
                add_child(dataset_node, coverage_node)

            geographic_description = form.geographic_description.data
            wbc = form.wbc.data if form.wbc.data is not None else ''
            ebc = form.ebc.data if form.ebc.data is not None else ''
            nbc = form.nbc.data if form.nbc.data is not None else ''
            sbc = form.sbc.data if form.sbc.data is not None else ''

            gc_node = Node(names.GEOGRAPHICCOVERAGE, parent=coverage_node)

            create_geographic_coverage(gc_node, geographic_description, wbc,
                                       ebc, nbc, sbc)

            if node_id and len(node_id) != 1:
                old_gc_node = Node.get_node_instance(node_id)
                if old_gc_node:
                    coverage_parent_node = old_gc_node.parent
                    coverage_parent_node.replace_child(old_gc_node, gc_node)
                else:
                    msg = f"No node found in the node store with node id {node_id}"
                    raise Exception(msg)
            else:
                add_child(coverage_node, gc_node)

            if nbc and sbc and nbc < sbc:
                flash('North should be greater than or equal to South')
                url = (url_for(PAGE_GEOGRAPHIC_COVERAGE,
                               filename=filename,
                               node_id=gc_node.id))

            if ebc and wbc and ebc < wbc:
                flash('East should be greater than or equal to West')
                url = (url_for(PAGE_GEOGRAPHIC_COVERAGE,
                               filename=filename,
                               node_id=gc_node.id))

            save_both_formats(filename=filename, eml_node=eml_node)

        return redirect(url)

    # Process GET
    if node_id == '1':
        form.init_md5()
    else:
        eml_node = load_eml(filename=filename)
        dataset_node = eml_node.find_child(names.DATASET)
        if dataset_node:
            coverage_node = dataset_node.find_child(names.COVERAGE)
            if coverage_node:
                gc_nodes = coverage_node.find_all_children(
                    names.GEOGRAPHICCOVERAGE)
                if gc_nodes:
                    for gc_node in gc_nodes:
                        if node_id == gc_node.id:
                            populate_geographic_coverage_form(form, gc_node)

    set_current_page('geographic_coverage')
    help = [
        get_help('geographic_coverages'),
        get_help('geographic_description'),
        get_help('bounding_coordinates')
    ]
    return render_template('geographic_coverage.html',
                           title='Geographic Coverage',
                           form=form,
                           help=help)