def test_copy_past_rendering_settings_from_image(self):
# Create 2 images with 2 channels each
iid1 = self.createTestImage(sizeC=2, session=self.sf).id.val
iid2 = self.createTestImage(sizeC=2, session=self.sf).id.val
conn = omero.gateway.BlitzGateway(client_obj=self.client)
# image1 set color model
image1 = conn.getObject("Image", iid1)
image1.resetDefaults()
image1.setColorRenderingModel()
image1.saveDefaults()
image1 = conn.getObject("Image", iid1)
# image2 set greyscale model
image2 = conn.getObject("Image", iid2)
image2.setGreyscaleRenderingModel()
image2.saveDefaults()
image2 = conn.getObject("Image", iid2)
assert image1.isGreyscaleRenderingModel() is False
assert image2.isGreyscaleRenderingModel() is True
# copy rendering settings from image1 via ID
request_url = reverse('webgateway.views.copy_image_rdef_json')
data = {"fromid": iid1}
_get_response(self.django_client, request_url, data, status_code=200)
# paste rendering settings to image2
data = {'toids': iid2}
_csrf_post_response(self.django_client, request_url, data)
image2 = conn.getObject("Image", iid2)
assert image2.isGreyscaleRenderingModel() is False
def test_edit_tag_and_tagset(self, dtype):
"""
Creates Tag/Tagset and tests editing of name and description
"""
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {'folder_type': dtype, 'name': 'beforeEdit'}
response = _csrf_post_response(self.django_client, request_url, data)
tagId = json.loads(response.content).get("id")
# Edit name
request_url = reverse("manage_action_containers",
args=["savename", dtype, tagId])
data = {'name': 'afterEdit'}
response = _csrf_post_response(self.django_client, request_url, data)
# Edit description
request_url = reverse("manage_action_containers",
args=["savedescription", dtype, tagId])
data = {'description': 'New description after editing'}
response = _csrf_post_response(self.django_client, request_url, data)
# check edited name and description
tagset = self.query.get('TagAnnotationI', tagId)
assert tagset is not None
if dtype == "tagset":
assert tagset.ns.val == omero.constants.metadata.NSINSIGHTTAGSET
assert tagset.textValue.val == 'afterEdit'
assert tagset.description.val == 'New description after editing'
def test_edit_share(self):
# create images
images = [self.createTestImage(session=self.sf),
self.createTestImage(session=self.sf)]
sid = self.sf.getShareService().createShare(
"foobar", rtime(None), images, [self.user], [], True)
request_url = reverse("manage_action_containers",
args=["save", "share", sid])
data = {
'enable': 'on',
'image': [i.id.val for i in images],
'members': self.user.id.val,
'message': 'another foobar'
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# remove image from share
request_url = reverse("manage_action_containers",
args=["removefromshare", "share", sid])
data = {
'source': images[1].id.val,
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_paste_move_remove_deletamany_image(self):
# Add dataset
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {'folder_type': 'dataset', 'name': 'foobar'}
_post_response(self.django_client, request_url, data)
response = _csrf_post_response(self.django_client, request_url, data)
did = json.loads(response.content).get("id")
img = self.make_image()
print img
# Link image to Dataset
request_url = reverse("api_links")
data = {'dataset': {did: {'image': [img.id.val]}}}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client,
request_url,
json.dumps(data),
content_type="application/json")
# Unlink image from Dataset
request_url = reverse("api_links")
data = {'dataset': {did: {'image': [img.id.val]}}}
_delete_response(self.django_client, request_url, data)
response = _csrf_delete_response(self.django_client,
request_url,
json.dumps(data),
content_type="application/json")
# Response will contain remaining links from image (see test_links.py)
response = json.loads(response.content)
assert response == {"success": True}
def test_edit_share(self):
# create images
images = [
self.createTestImage(session=self.sf),
self.createTestImage(session=self.sf)
]
sid = self.sf.getShareService().createShare("foobar", rtime(None),
images, [self.user], [],
True)
request_url = reverse("manage_action_containers",
args=["save", "share", sid])
data = {
'enable': 'on',
'image': [i.id.val for i in images],
'members': self.user.id.val,
'message': 'another foobar'
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# remove image from share
request_url = reverse("manage_action_containers",
args=["removefromshare", "share", sid])
data = {
'source': images[1].id.val,
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_attach_file(self):
# Due to EOF both posts must be test separately
# Bad post
img = self.image_with_channels()
try:
temp = tempfile.NamedTemporaryFile(suffix='.csrf')
temp.write("Testing without csrf token")
temp.seek(0)
request_url = reverse('annotate_file')
data = {
'image': img.id.val,
'index': 0,
'annotation_file': temp
}
_post_response(self.django_client, request_url, data)
finally:
temp.close()
# Good post
try:
temp = tempfile.NamedTemporaryFile(suffix='.csrf')
temp.write("Testing csrf token")
temp.seek(0)
request_url = reverse('annotate_file')
data = {
'image': img.id.val,
'index': 0,
'annotation_file': temp
}
_csrf_post_response(self.django_client, request_url, data)
finally:
temp.close()
def test_create_tag_and_tagset(self):
"""
Creates a Tagset then a Tag within the Tagset
"""
tsValue = 'testTagset'
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {'folder_type': 'tagset', 'name': tsValue}
response = _csrf_post_response(self.django_client, request_url, data)
tagsetId = json.loads(response.content).get("id")
# check creation
tagset = self.query.get('TagAnnotationI', tagsetId)
assert tagset is not None
assert tagset.ns.val == omero.constants.metadata.NSINSIGHTTAGSET
assert tagset.textValue.val == tsValue
# Add tag to the tagset
request_url = reverse("manage_action_containers",
args=["addnewcontainer", "tagset", tagsetId])
data = {'folder_type': 'tag', 'name': 'tagInTagset'}
_post_response(self.django_client, request_url, data)
response2 = _csrf_post_response(self.django_client, request_url, data)
tagId = json.loads(response2.content).get("id")
# Check that tag is listed under tagset...
request_url = reverse("api_tags_and_tagged")
data = {'id': tagsetId}
data = _get_response_json(self.django_client, request_url, data)
assert len(data['tags']) == 1
assert data['tags'][0]['id'] == tagId
def test_attach_file(self):
# Due to EOF both posts must be test separately
# Bad post
img = self.image_with_channels()
try:
temp = tempfile.NamedTemporaryFile(suffix='.csrf')
temp.write("Testing without csrf token")
temp.seek(0)
request_url = reverse('annotate_file')
data = {'image': img.id.val, 'index': 0, 'annotation_file': temp}
_post_response(self.django_client, request_url, data)
finally:
temp.close()
# Good post
try:
temp = tempfile.NamedTemporaryFile(suffix='.csrf')
temp.write("Testing csrf token")
temp.seek(0)
request_url = reverse('annotate_file')
data = {'image': img.id.val, 'index': 0, 'annotation_file': temp}
_csrf_post_response(self.django_client, request_url, data)
finally:
temp.close()
def test_create_group(self):
uuid = self.uuid()
request_url = reverse('wamanagegroupid', args=["create"])
data = {"name": uuid, "description": uuid, "permissions": 0}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client,
request_url,
data,
status_code=302)
def test_add_and_remove_comment(self):
request_url = reverse('annotate_comment')
data = {
'comment': 'foobar',
'image': self.image_with_channels().id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_apply_owners_rendering_settings(self):
img = self.createTestImage(session=self.sf)
request_url = reverse('reset_owners_rdef_json')
data = {'toids': img.id.val, 'to_type': 'image'}
_post_response(self.django_client, request_url, data, status_code=403)
_csrf_post_response(self.django_client, request_url, data)
def test_forgot_password(self):
request_url = reverse('waforgottenpassword')
data = {
'username': "******",
'email': "email"
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_add_and_remove_comment(self):
request_url = reverse('annotate_comment')
data = {
'comment': 'foobar',
'image': self.image_with_channels().id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_create_group(self):
uuid = self.uuid()
request_url = reverse('wamanagegroupid', args=["create"])
data = {
"name": uuid,
"description": uuid,
"permissions": 0
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client, request_url, data,
status_code=302)
def test_avatar(self):
user_id = self.user.id.val
# Due to EOF both posts must be test separately
# Bad post
try:
temp = tempfile.NamedTemporaryFile(suffix='.png')
img = Image.new("RGB", (200, 200), "#FFFFFF")
draw = ImageDraw.Draw(img)
r, g, b = rint(0, 255), rint(0, 255), rint(0, 255)
for i in range(200):
draw.line((i, 0, i, 200), fill=(int(r), int(g), int(b)))
img.save(temp, "PNG")
temp.seek(0)
request_url = reverse('wamanageavatar', args=[user_id, "upload"])
data = {'filename': 'avatar.png', "photo": temp}
_post_response(self.django_client, request_url, data)
finally:
temp.close()
# Good post
try:
temp = tempfile.NamedTemporaryFile(suffix='.png')
img = Image.new("RGB", (200, 200), "#FFFFFF")
draw = ImageDraw.Draw(img)
r, g, b = rint(0, 255), rint(0, 255), rint(0, 255)
for i in range(200):
draw.line((i, 0, i, 200), fill=(int(r), int(g), int(b)))
img.save(temp, "PNG")
temp.seek(0)
request_url = reverse('wamanageavatar', args=[user_id, "upload"])
data = {'filename': 'avatar.png', "photo": temp}
_csrf_post_response(self.django_client,
request_url,
data,
status_code=302)
finally:
temp.close()
# Crop avatar
request_url = reverse('wamanageavatar', args=[user_id, "crop"])
data = {'x1': 50, 'x2': 150, 'y1': 50, 'y2': 150}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client,
request_url,
data,
status_code=302)
def test_change_password(self):
user = self.new_user()
request_url = reverse('wamanagechangepasswordid', args=[user.id.val])
data = {
"old_password": self.root.ic.getProperties().getProperty(
'omero.rootpass'),
"password": "******",
"confirmation": "new"
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client, request_url, data)
def test_edit_group(self):
group = self.new_group(perms="rw----")
request_url = reverse('wamanagegroupid', args=["save", group.id.val])
data = {
"name": group.name.val,
"description": "description",
"permissions": 0
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client, request_url, data,
status_code=302)
def test_move_data(self):
group_id = self.new_group(experimenters=[self.user]).id.val
request_url = reverse('chgrp')
data = {
'image': self.image_with_channels().id.val,
'group_id': group_id
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client, request_url, data)
def test_move_data(self):
group_id = self.new_group(experimenters=[self.user]).id.val
request_url = reverse('chgrp')
data = {
'image': self.image_with_channels().id.val,
'group_id': group_id
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client, request_url, data)
def test_change_password(self):
user = self.new_user()
request_url = reverse('wamanagechangepasswordid', args=[user.id.val])
data = {
"old_password":
self.root.ic.getProperties().getProperty('omero.rootpass'),
"password":
"******",
"confirmation":
"new"
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client, request_url, data)
def test_myaccount(self):
request_url = reverse('wamyaccount', args=["save"])
data = {
"omename": self.user.omeName.val,
"first_name": self.user.omeName.val,
"last_name": self.user.lastName.val,
"institution": "foo bar",
"default_group": self.group.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data,
status_code=302)
def test_edit_group(self):
group = self.new_group(perms="rw----")
request_url = reverse('wamanagegroupid', args=["save", group.id.val])
data = {
"name": group.name.val,
"description": "description",
"permissions": 0
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client,
request_url,
data,
status_code=302)
def test_apply_owners_rendering_settings(self):
img = self.createTestImage(session=self.sf)
request_url = reverse('reset_owners_rdef_json')
data = {
'toids': img.id.val,
'to_type': 'image'
}
_post_response(self.django_client, request_url, data,
status_code=403)
_csrf_post_response(self.django_client, request_url, data)
def test_edit_channel_names(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
img = self.image_with_channels()
query_string = data = {'channel0': 'foobar'}
request_url = reverse('edit_channel_names', args=[img.id.val])
_csrf_get_response(self.django_client,
request_url,
query_string,
status_code=405)
_csrf_post_response(self.django_client, request_url, data)
def test_create_share(self):
img = self.make_image()
request_url = reverse("manage_action_containers",
args=["add", "share"])
data = {
'enable': 'on',
'image': img.id.val,
'members': self.user.id.val,
'message': 'foobar'
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_create_share(self):
img = self.make_image()
request_url = reverse("manage_action_containers",
args=["add", "share"])
data = {
'enable': 'on',
'image': img.id.val,
'members': self.user.id.val,
'message': 'foobar'
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_su(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
user = self.new_user()
request_url = reverse('webgateway_su', args=[user.omeName.val])
_csrf_get_response(self.django_root_client, request_url, {})
_post_response(self.django_root_client, request_url, {})
_csrf_post_response(self.django_root_client, request_url, {})
def test_edit_user(self):
user = self.new_user()
request_url = reverse('wamanageexperimenterid',
args=["save", user.id.val])
data = {
"omename": user.omeName.val,
"first_name": user.firstName.val,
"last_name": user.lastName.val,
"default_group": user.copyGroupExperimenterMap()[0].parent.id.val,
"other_groups": user.copyGroupExperimenterMap()[0].parent.id.val,
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client, request_url, data,
status_code=302)
def test_edit_group_by_owner(self):
self.add_groups(experimenter=self.user, groups=[self.group],
owner=True)
request_url = reverse('wamanagegroupownerid',
args=["save", self.group.id.val])
data = {
"members": self.user.id.val,
"owners": self.user.id.val,
"permissions": 0
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data,
status_code=302)
def test_edit_channel_names(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
img = self.image_with_channels()
query_string = data = {'channel0': 'foobar'}
request_url = reverse(
'edit_channel_names', args=[img.id.val]
)
_csrf_get_response(self.django_client, request_url, query_string,
status_code=405)
_csrf_post_response(self.django_client, request_url, data)
def test_myaccount(self):
request_url = reverse('wamyaccount', args=["save"])
data = {
"omename": self.user.omeName.val,
"first_name": self.user.omeName.val,
"last_name": self.user.lastName.val,
"institution": "foo bar",
"default_group": self.group.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client,
request_url,
data,
status_code=302)
def test_su(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
user = self.new_user()
request_url = reverse('webgateway_su', args=[user.omeName.val])
_csrf_get_response(self.django_root_client, request_url, {})
_post_response(self.django_root_client, request_url, {})
_csrf_post_response(self.django_root_client, request_url, {})
def test_ome_tiff_script(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
img = self.createTestImage(session=self.sf)
request_url = reverse('ome_tiff_script', args=[img.id.val])
_post_response(self.django_client, request_url, {})
_csrf_post_response(self.django_client, request_url, {})
_csrf_get_response(self.django_client, request_url, {},
status_code=405)
def test_ome_tiff_script(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
img = self.createTestImage(session=self.sf)
request_url = reverse('ome_tiff_script', args=[img.id.val])
_post_response(self.django_client, request_url, {})
_csrf_post_response(self.django_client, request_url, {})
_csrf_get_response(self.django_client,
request_url, {},
status_code=405)
def test_edit_user(self):
user = self.new_user()
request_url = reverse('wamanageexperimenterid',
args=["save", user.id.val])
data = {
"omename": user.omeName.val,
"first_name": user.firstName.val,
"last_name": user.lastName.val,
"default_group": user.copyGroupExperimenterMap()[0].parent.id.val,
"other_groups": user.copyGroupExperimenterMap()[0].parent.id.val,
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client,
request_url,
data,
status_code=302)
def test_create_user(self):
uuid = self.uuid()
groupid = self.new_group().id.val
request_url = reverse('wamanageexperimenterid', args=["create"])
data = {
"omename": uuid,
"first_name": uuid,
"last_name": uuid,
"active": "on",
"default_group": groupid,
"other_groups": groupid,
"password": uuid,
"confirmation": uuid
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client, request_url, data,
status_code=302)
def test_add_and_rename_container(self):
# Add project
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {'folder_type': 'project', 'name': 'foobar'}
_post_response(self.django_client, request_url, data)
response = _csrf_post_response(self.django_client, request_url, data)
pid = json.loads(response.content).get("id")
# Add dataset to the project
request_url = reverse("manage_action_containers",
args=["addnewcontainer", "project", pid])
data = {'folder_type': 'dataset', 'name': 'foobar'}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Rename project
request_url = reverse("manage_action_containers",
args=["savename", "project", pid])
data = {'name': 'anotherfoobar'}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Change project description
request_url = reverse("manage_action_containers",
args=["savedescription", "project", pid])
data = {'description': 'anotherfoobar'}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_paste_move_remove_deletamany_image(self):
# Add dataset
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {
'folder_type': 'dataset',
'name': 'foobar'
}
_post_response(self.django_client, request_url, data)
response = _csrf_post_response(self.django_client, request_url, data)
did = json.loads(response.content).get("id")
# Copy image
img = self.image_with_channels()
request_url = reverse("manage_action_containers",
args=["paste", "image", img.id.val])
data = {
'destination': "dataset-%i" % did
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Move image
request_url = reverse("manage_action_containers",
args=["move", "image", img.id.val])
data = {
'destination': 'orphaned-0',
'parent': 'dataset-%i' % did
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Remove image
request_url = reverse("manage_action_containers",
args=["remove", "image", img.id.val])
data = {
'parent': 'dataset-%i' % did
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Delete image
request_url = reverse("manage_action_containers", args=["deletemany"])
data = {
'child': 'on',
'dataset': did
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_edit_group_by_owner(self):
self.add_groups(experimenter=self.user,
groups=[self.group],
owner=True)
request_url = reverse('wamanagegroupownerid',
args=["save", self.group.id.val])
data = {
"members": self.user.id.val,
"owners": self.user.id.val,
"permissions": 0
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client,
request_url,
data,
status_code=302)
def test_create_user(self):
uuid = self.uuid()
groupid = self.new_group().id.val
request_url = reverse('wamanageexperimenterid', args=["create"])
data = {
"omename": uuid,
"first_name": uuid,
"last_name": uuid,
"active": "on",
"default_group": groupid,
"other_groups": groupid,
"password": uuid,
"confirmation": uuid
}
_post_response(self.django_root_client, request_url, data)
_csrf_post_response(self.django_root_client,
request_url,
data,
status_code=302)
def test_paste_move_remove_deletamany_image(self):
# Add dataset
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {
'folder_type': 'dataset',
'name': 'foobar'
}
_post_response(self.django_client, request_url, data)
response = _csrf_post_response(self.django_client, request_url, data)
did = json.loads(response.content).get("id")
img = self.make_image()
print img
# Link image to Dataset
request_url = reverse("api_links")
data = {
'dataset': {did: {'image': [img.id.val]}}
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client,
request_url,
json.dumps(data),
content_type="application/json")
# Unlink image from Dataset
request_url = reverse("api_links")
data = {
'dataset': {did: {'image': [img.id.val]}}
}
_delete_response(self.django_client, request_url, data)
response = _csrf_delete_response(self.django_client,
request_url,
json.dumps(data),
content_type="application/json")
# Response will contain remaining links from image (see test_links.py)
response = json.loads(response.content)
assert response == {"success": True}
def test_script(self):
img = self.createTestImage(session=self.sf)
script_path = "omero/export_scripts/Batch_Image_Export.py"
script = self.sf.getScriptService().getScriptID(script_path)
request_url = reverse('script_run', args=[script])
data = {
"Data_Type": "Image",
"IDs": img.id.val,
"Choose_T_Section": "Default-T (last-viewed)",
"Choose_Z_Section": "Default-Z (last-viewed)",
"Export_Individual_Channels": "on",
"Export_Merged_Image": "on",
"Folder_Name": "Batch_Image_Export",
"Format": "JPEG",
"Zoom": "100%"
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_script(self):
img = self.createTestImage(session=self.sf)
script_path = "omero/export_scripts/Batch_Image_Export.py"
script = self.sf.getScriptService().getScriptID(script_path)
request_url = reverse('script_run', args=[script])
data = {
"Data_Type": "Image",
"IDs": img.id.val,
"Choose_T_Section": "Default-T (last-viewed)",
"Choose_Z_Section": "Default-Z (last-viewed)",
"Export_Individual_Channels": "on",
"Export_Merged_Image": "on",
"Folder_Name": "Batch_Image_Export",
"Format": "JPEG",
"Zoom": "100%"
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def doDryRun(data):
request_url = reverse('chgrpDryRun')
rsp = _csrf_post_response(django_client, request_url, data)
jobId = rsp.content
# Keep polling activities until dry-run job completed
activities_url = reverse('activities_json')
data = {'jobId': jobId}
rsp = _get_response_json(django_client, activities_url, data)
while rsp['finished'] is not True:
time.sleep(0.5)
rsp = _get_response_json(django_client, activities_url, data)
return rsp
def test_reset_rendering_settings(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
img = self.createTestImage(session=self.sf)
# Reset through webclient as it is calling directly
# webgateway.reset_image_rdef_json
request_url = reverse('reset_rdef_json')
data = {'toids': img.id.val, 'to_type': 'image'}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
_get_response(self.django_client, request_url, data)
_csrf_get_response(self.django_client,
request_url,
data,
status_code=405)
def test_add_edit_and_remove_tag(self):
# Add tag
img = self.make_image()
tag = self.new_tag()
request_url = reverse('annotate_tags')
data = {
'image': img.id.val,
'filter_mode': 'any',
'filter_owner_mode': 'all',
'index': 0,
'newtags-0-description': '',
'newtags-0-tag': 'foobar',
'newtags-0-tagset': '',
'newtags-INITIAL_FORMS': 0,
'newtags-MAX_NUM_FORMS': 1000,
'newtags-TOTAL_FORMS': 1,
'tags': tag.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Remove tag
request_url = reverse("manage_action_containers",
args=["remove", "tag", tag.id.val])
data = {'index': 0, 'parent': "image-%i" % img.id.val}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Delete tag
request_url = reverse("manage_action_containers",
args=["delete", "tag", tag.id.val])
_post_response(self.django_client, request_url, {})
_csrf_post_response(self.django_client, request_url, {})
def test_copy_past_rendering_settings_from_image(self):
# Create 2 images with 2 channels each
iid1 = self.createTestImage(sizeC=2, session=self.sf).id.val
iid2 = self.createTestImage(sizeC=2, session=self.sf).id.val
conn = omero.gateway.BlitzGateway(client_obj=self.client)
# image1 set color model
image1 = conn.getObject("Image", iid1)
image1.resetDefaults()
image1.setColorRenderingModel()
image1.saveDefaults()
image1 = conn.getObject("Image", iid1)
# image2 set greyscale model
image2 = conn.getObject("Image", iid2)
image2.setGreyscaleRenderingModel()
image2.saveDefaults()
image2 = conn.getObject("Image", iid2)
assert image1.isGreyscaleRenderingModel() is False
assert image2.isGreyscaleRenderingModel() is True
# copy rendering settings from image1 via ID
request_url = reverse('webgateway.views.copy_image_rdef_json')
data = {
"fromid": iid1
}
_get_response(self.django_client, request_url, data, status_code=200)
# paste rendering settings to image2
data = {
'toids': iid2
}
_csrf_post_response(self.django_client, request_url, data)
image2 = conn.getObject("Image", iid2)
assert image2.isGreyscaleRenderingModel() is False
def test_create_tag_and_tagset(self):
"""
Creates a Tagset then a Tag within the Tagset
"""
tsValue = 'testTagset'
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {
'folder_type': 'tagset',
'name': tsValue
}
response = _csrf_post_response(self.django_client, request_url, data)
tagsetId = json.loads(response.content).get("id")
# check creation
tagset = self.query.get('TagAnnotationI', tagsetId)
assert tagset is not None
assert tagset.ns.val == omero.constants.metadata.NSINSIGHTTAGSET
assert tagset.textValue.val == tsValue
# Add tag to the tagset
request_url = reverse("manage_action_containers",
args=["addnewcontainer", "tagset", tagsetId])
data = {
'folder_type': 'tag',
'name': 'tagInTagset'
}
_post_response(self.django_client, request_url, data)
response2 = _csrf_post_response(self.django_client, request_url, data)
tagId = json.loads(response2.content).get("id")
# Check that tag is listed under tagset...
request_url = reverse("api_tags_and_tagged")
data = {'id': tagsetId}
data = _get_response_json(self.django_client, request_url, data)
assert len(data['tags']) == 1
assert data['tags'][0]['id'] == tagId
def test_copy_past_rendering_settings(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
img = self.createTestImage(session=self.sf)
# put image id into session
session = self.django_client.session
session['fromid'] = img.id.val
session.save()
request_url = reverse('webgateway.views.copy_image_rdef_json')
data = {'toids': img.id.val}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
_csrf_get_response(self.django_client,
request_url,
data,
status_code=405)
def test_reset_rendering_settings(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
img = self.createTestImage(session=self.sf)
# Reset through webclient as it is calling directly
# webgateway.reset_image_rdef_json
request_url = reverse('reset_rdef_json')
data = {
'toids': img.id.val,
'to_type': 'image'
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
_get_response(self.django_client, request_url, data)
_csrf_get_response(self.django_client, request_url, data,
status_code=405)
def test_edit_tag_and_tagset(self, dtype):
"""
Creates Tag/Tagset and tests editing of name and description
"""
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {
'folder_type': dtype,
'name': 'beforeEdit'
}
response = _csrf_post_response(self.django_client, request_url, data)
tagId = json.loads(response.content).get("id")
# Edit name
request_url = reverse("manage_action_containers",
args=["savename", dtype, tagId])
data = {
'name': 'afterEdit'
}
response = _csrf_post_response(self.django_client, request_url, data)
# Edit description
request_url = reverse("manage_action_containers",
args=["savedescription", dtype, tagId])
data = {
'description': 'New description after editing'
}
response = _csrf_post_response(self.django_client, request_url, data)
# check edited name and description
tagset = self.query.get('TagAnnotationI', tagId)
assert tagset is not None
if dtype == "tagset":
assert tagset.ns.val == omero.constants.metadata.NSINSIGHTTAGSET
assert tagset.textValue.val == 'afterEdit'
assert tagset.description.val == 'New description after editing'
def test_copy_past_rendering_settings(self):
"""
CSRF protection does not check `GET` requests so we need to be sure
that this request results in an HTTP 405 (method not allowed) status
code.
"""
img = self.createTestImage(session=self.sf)
# put image id into session
session = self.django_client.session
session['fromid'] = img.id.val
session.save()
request_url = reverse('webgateway.views.copy_image_rdef_json')
data = {
'toids': img.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
_csrf_get_response(self.django_client, request_url, data,
status_code=405)
def test_add_and_rename_container(self):
# Add project
request_url = reverse("manage_action_containers",
args=["addnewcontainer"])
data = {
'folder_type': 'project',
'name': 'foobar'
}
_post_response(self.django_client, request_url, data)
response = _csrf_post_response(self.django_client, request_url, data)
pid = json.loads(response.content).get("id")
# Add dataset to the project
request_url = reverse("manage_action_containers",
args=["addnewcontainer", "project", pid])
data = {
'folder_type': 'dataset',
'name': 'foobar'
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Rename project
request_url = reverse("manage_action_containers",
args=["savename", "project", pid])
data = {
'name': 'anotherfoobar'
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Change project description
request_url = reverse("manage_action_containers",
args=["savedescription", "project", pid])
data = {
'description': 'anotherfoobar'
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
def test_add_edit_and_remove_tag(self):
# Add tag
img = self.image_with_channels()
tag = self.new_tag()
request_url = reverse('annotate_tags')
data = {
'image': img.id.val,
'filter_mode': 'any',
'filter_owner_mode': 'all',
'index': 0,
'newtags-0-description': '',
'newtags-0-tag': 'foobar',
'newtags-0-tagset': '',
'newtags-INITIAL_FORMS': 0,
'newtags-MAX_NUM_FORMS': 1000,
'newtags-TOTAL_FORMS': 1,
'tags': tag.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Edit tag, see save container name and description
# http://localhost/webclient/action/savename/tag/ID/
# http://localhost/webclient/action/savedescription/tag/ID/
# Remove tag
request_url = reverse("manage_action_containers",
args=["remove", "tag", tag.id.val])
data = {
'index': 0,
'parent': "image-%i" % img.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Delete tag
request_url = reverse("manage_action_containers",
args=["delete", "tag", tag.id.val])
_post_response(self.django_client, request_url, {})
_csrf_post_response(self.django_client, request_url, {})
def test_add_edit_and_remove_tag(self):
# Add tag
img = self.image_with_channels()
tag = self.new_tag()
request_url = reverse('annotate_tags')
data = {
'image': img.id.val,
'filter_mode': 'any',
'filter_owner_mode': 'all',
'index': 0,
'newtags-0-description': '',
'newtags-0-tag': 'foobar',
'newtags-0-tagset': '',
'newtags-INITIAL_FORMS': 0,
'newtags-MAX_NUM_FORMS': 1000,
'newtags-TOTAL_FORMS': 1,
'tags': tag.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Edit tag, see save container name and description
# http://localhost/webclient/action/savename/tag/ID/
# http://localhost/webclient/action/savedescription/tag/ID/
# Remove tag
request_url = reverse("manage_action_containers",
args=["remove", "tag", tag.id.val])
data = {'index': 0, 'parent': "image-%i" % img.id.val}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Delete tag
request_url = reverse("manage_action_containers",
args=["delete", "tag", tag.id.val])
_post_response(self.django_client, request_url, {})
_csrf_post_response(self.django_client, request_url, {})
def test_add_edit_and_remove_tag(self):
# Add tag
img = self.make_image()
tag = self.new_tag()
request_url = reverse('annotate_tags')
data = {
'image': img.id.val,
'filter_mode': 'any',
'filter_owner_mode': 'all',
'index': 0,
'newtags-0-description': '',
'newtags-0-tag': 'foobar',
'newtags-0-tagset': '',
'newtags-INITIAL_FORMS': 0,
'newtags-MAX_NUM_FORMS': 1000,
'newtags-TOTAL_FORMS': 1,
'tags': tag.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Remove tag
request_url = reverse("manage_action_containers",
args=["remove", "tag", tag.id.val])
data = {
'index': 0,
'parent': "image-%i" % img.id.val
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data)
# Delete tag
request_url = reverse("manage_action_containers",
args=["delete", "tag", tag.id.val])
_post_response(self.django_client, request_url, {})
_csrf_post_response(self.django_client, request_url, {})
def _csrf_post_response_json(django_client, request_url,
query_string, status_code=200):
rsp = _csrf_post_response(django_client, request_url,
query_string, status_code)
assert rsp.get('Content-Type') == 'application/json'
return json.loads(rsp.content)
def test_copy_past_rendering_settings_from_url(self):
# Create 2 images with 2 channels each
iid1 = self.createTestImage(sizeC=2, session=self.sf).id.val
iid2 = self.createTestImage(sizeC=2, session=self.sf).id.val
conn = omero.gateway.BlitzGateway(client_obj=self.client)
# image1 set color model
image1 = conn.getObject("Image", iid1)
image1.resetDefaults()
image1.setColorRenderingModel()
image1.saveDefaults()
image1 = conn.getObject("Image", iid1)
# image2 set greyscale model
image2 = conn.getObject("Image", iid2)
image2.setGreyscaleRenderingModel()
image2.saveDefaults()
image2 = conn.getObject("Image", iid2)
assert image1.isGreyscaleRenderingModel() is False
assert image2.isGreyscaleRenderingModel() is True
def buildParamC(im):
chs = []
for i, ch in enumerate(im.getChannels()):
act = "" if ch.isActive() else "-"
start = ch.getWindowStart()
end = ch.getWindowEnd()
color = ch.getColor().getHtml()
chs.append("%s%s|%s:%s$%s" % (act, i+1, start, end, color))
return ",".join(chs)
# build channel parameter e.g. 1|0:15$FF0000...
old_c1 = buildParamC(image1)
# copy rendering settings from image1 via URL
request_url = reverse('webgateway.views.copy_image_rdef_json')
data = {
"imageId": iid1,
"c": old_c1,
"ia": 0,
"m": "c",
"p": "normal",
"q": 0.9,
"t": 1,
"x": 0,
"y": 0,
"z": 1,
"zm": 100
}
_get_response(self.django_client, request_url, data, status_code=200)
# paste rendering settings to image2
data = {
'toids': iid2
}
_csrf_post_response(self.django_client, request_url, data)
# reload image1
image1 = conn.getObject("Image", iid1)
# reload image2
image2 = conn.getObject("Image", iid2)
new_c2 = buildParamC(image2)
# compare Channels
# old image1 1|0:15$FF0000,2|0:15$00FF00
# image2 1|0:15$00FF00,2|0:15$00FF00
# new image1 1|0:15$FF0000,2|0:15$00FF00
# image2 1|0:15$FF0000,2|0:15$00FF00
assert old_c1 == new_c2
# check if image2 rendering model changed from greyscale to color
assert image2.isGreyscaleRenderingModel() is False
def test_avatar(self):
user_id = self.user.id.val
# Due to EOF both posts must be test separately
# Bad post
try:
temp = tempfile.NamedTemporaryFile(suffix='.png')
img = Image.new("RGB", (200, 200), "#FFFFFF")
draw = ImageDraw.Draw(img)
r, g, b = rint(0, 255), rint(0, 255), rint(0, 255)
for i in range(200):
draw.line((i, 0, i, 200), fill=(int(r), int(g), int(b)))
img.save(temp, "PNG")
temp.seek(0)
request_url = reverse('wamanageavatar', args=[user_id, "upload"])
data = {
'filename': 'avatar.png',
"photo": temp
}
_post_response(self.django_client, request_url, data)
finally:
temp.close()
# Good post
try:
temp = tempfile.NamedTemporaryFile(suffix='.png')
img = Image.new("RGB", (200, 200), "#FFFFFF")
draw = ImageDraw.Draw(img)
r, g, b = rint(0, 255), rint(0, 255), rint(0, 255)
for i in range(200):
draw.line((i, 0, i, 200), fill=(int(r), int(g), int(b)))
img.save(temp, "PNG")
temp.seek(0)
request_url = reverse('wamanageavatar', args=[user_id, "upload"])
data = {
'filename': 'avatar.png',
"photo": temp
}
_csrf_post_response(self.django_client, request_url, data,
status_code=302)
finally:
temp.close()
# Crop avatar
request_url = reverse('wamanageavatar', args=[user_id, "crop"])
data = {
'x1': 50,
'x2': 150,
'y1': 50,
'y2': 150
}
_post_response(self.django_client, request_url, data)
_csrf_post_response(self.django_client, request_url, data,
status_code=302)
