def test_generate_mutations_simple(self):
mismatches = generate_mutations_for_kmer("A", 1)
self.assertEqual(["C", "G", "T"], mismatches)
mismatches = generate_mutations_for_kmer("AC", 1)
self.assertEqual(["AA", "AG", "AT", "CC", "GC", "TC"],
sorted(mismatches))
def test_generate_mutations(self):
mismatches = generate_mutations_for_kmer("ACG", 2)
print(sorted(mismatches))
#self.assertEqual(["AAA", "AAG", "ACC", "ACT", "CCG", "GC", "TC"], sorted(mismatches))
expected_values = ["AAA", "AAG", "ACC", "ACT", "CCG", "GCG", "GGG", "TCT"]
for ev in expected_values:
self.assertTrue(ev in mismatches, ev)
for mm in mismatches:
self.assertEqual(3, len(mm))
def test_generate_mutations(self):
mismatches = generate_mutations_for_kmer("ACG", 2)
print(sorted(mismatches))
#self.assertEqual(["AAA", "AAG", "ACC", "ACT", "CCG", "GC", "TC"], sorted(mismatches))
expected_values = [
"AAA", "AAG", "ACC", "ACT", "CCG", "GCG", "GGG", "TCT"
]
for ev in expected_values:
self.assertTrue(ev in mismatches, ev)
for mm in mismatches:
self.assertEqual(3, len(mm))
def test_generate_mutations_simple(self):
mismatches = generate_mutations_for_kmer("A", 1)
self.assertEqual(["C", "G", "T"], mismatches)
mismatches = generate_mutations_for_kmer("AC", 1)
self.assertEqual(["AA", "AG", "AT", "CC", "GC", "TC"], sorted(mismatches))
