def processOneQuery(self, precomputed_query):
"""
Runs the retrieval and evaluation for a single query
"""
if self.exp.get("queries_classification", "") not in ["", None]:
q_type = precomputed_query[self.exp.get("queries_classification")]
if self.per_class_count[q_type] < self.max_per_class_results:
self.per_class_count[q_type] += 1
else:
print("Too many queries of type %s already" % q_type)
return
guid = precomputed_query["file_guid"]
self.logger.total_citations += self.files_dict[guid]["resolvable_citations"]
all_doc_methods = deepcopy(self.main_all_doc_methods)
# If we're running per-file resolution and we are now on a different file, load its model
if not self.exp["full_corpus"] and guid != self.previous_guid:
self.previous_guid = guid
self.loadModel(guid)
# create a dict where every field gets a weight of 1
for method in self.main_all_doc_methods:
all_doc_methods[method]["runtime_parameters"] = {
x: 1 for x in self.main_all_doc_methods[method]["runtime_parameters"]
}
self.current_all_doc_methods = all_doc_methods
# for every method used for extracting BOWs
for doc_method in all_doc_methods:
# Log everything if the logger is enabled
## self.logger.logReport("Citation: "+precomputed_query["citation_id"]+"\n Query method:"+precomputed_query["query_method"]+" \nDoc method: "+doc_method +"\n")
## self.logger.logReport(precomputed_query["query_text"]+"\n")
# ACTUAL RETRIEVAL HAPPENING - run query
retrieved = self.tfidfmodels[doc_method].runQuery(
precomputed_query,
addExtraWeights(all_doc_methods[doc_method]["runtime_parameters"], self.exp),
guid,
max_results=exp.get("max_results_recall", MAX_RESULTS_RECALL),
)
if not retrieved: # the query was empty or something
self.addEmptyResult(guid, precomputed_query, doc_method)
else:
self.addResult(guid, precomputed_query, doc_method, retrieved)
if self.exp.get("add_random_control_result", False):
self.addRandomControlResult(guid, precomputed_query)
self.logger.showProgressReport(guid) # prints out info on how it's going
def dynamicWeightValues(self, split_fold):
"""
Find the best combination of weights using a greedy heuristic, not
testing every possible one, but selecting the best one at each stage
"""
all_doc_methods = getDictOfTestingMethods(self.exp["doc_methods"])
annotated_boost_methods = [x for x in all_doc_methods if all_doc_methods[x]["type"] in ["annotated_boost"]]
initialization_methods = [1]
## initialization_methods=[1,"random"]
MIN_WEIGHT = 0
## self.exp["movements"]=[-1,3]
self.exp["movements"] = [-1, 6, -2]
best_weights = {}
numfolds = self.exp.get("cross_validation_folds", 2)
## counter=weightCounterList(exp["weight_values"])
print("Processing zones ", self.exp["train_weights_for"])
for query_type in self.exp["train_weights_for"]:
best_weights[query_type] = {}
results_compare = []
retrieval_results = self.loadPrecomputedFormulas(query_type)
if len(retrieval_results) == 0:
print("No precomputed formulas for ", query_type)
continue
if len(retrieval_results) < numfolds:
print("Number of results is smaller than number of folds for zone type ", query_type)
continue
cv = cross_validation.KFold(
len(retrieval_results), n_folds=numfolds, shuffle=False, random_state=None
) # indices=True, k=None
cv = [k for k in cv]
traincv, testcv = cv[split_fold]
if isinstance(retrieval_results, ResultIncrementalReader):
train_set = retrieval_results.subset(traincv)
elif isinstance(retrieval_results, list):
train_set = [retrieval_results[i] for i in traincv]
else:
raise ValueError("Unkown class of results")
## train_set=retrieval_results.subset(traincv)
## train_set=[retrieval_results[i] for i in traincv]
if len(train_set) == 0:
print("Training set len is 0!")
return defaultdict(lambda: 1)
print("Training for citations in ", query_type, "zones:", len(train_set), "/", len(retrieval_results))
for method in annotated_boost_methods:
res = {}
for weight_initalization in initialization_methods:
if weight_initalization == 1:
## counter.initWeights(all_doc_methods[method]["runtime_parameters"])
weights = {x: 1 for x in all_doc_methods[method]["runtime_parameters"]}
elif weight_initalization == "random":
weights = {x: random.randint(-10, 10) for x in all_doc_methods[method]["runtime_parameters"]}
## counter.weights={x:random.randint(-10,10) for x in all_doc_methods[method]["runtime_parameters"]}
all_doc_methods[method]["runtime_parameters"] = weights
print("Computing initial score...")
scores = self.measurePrecomputedResolution(
train_set, method, addExtraWeights(weights, self.exp), query_type
)
score_baseline = scores[0][self.exp["metric"]]
previous_score = score_baseline
first_baseline = score_baseline
score_progression = [score_baseline]
global GLOBAL_FILE_COUNTER
## drawWeights(self.exp,weights,query_type+"_weights_"+str(GLOBAL_FILE_COUNTER))
## drawScoreProgression(self.exp,score_progression,query_type+"_"+str(GLOBAL_FILE_COUNTER))
GLOBAL_FILE_COUNTER += 1
overall_improvement = score_baseline
passes = 0
print("Finding best weights...")
while passes < 3 or overall_improvement > 0:
for direction in self.exp["movements"]: # [-1,6,-2]
print("Direction: ", direction)
for index in range(len(weights)):
## print("Weight: ", index)
weight_name = weights.keys()[index]
prev_weight = weights[weight_name]
# hard lower limit of 0 for weights
weights[weight_name] = max(MIN_WEIGHT, weights[weight_name] + direction)
scores = self.measurePrecomputedResolution(
train_set, method, addExtraWeights(weights, self.exp), query_type
)
this_score = scores[0][self.exp["metric"]]
if this_score <= previous_score:
weights[weight_name] = prev_weight
else:
previous_score = this_score
overall_improvement = this_score - score_baseline
score_baseline = this_score
score_progression.append(this_score)
# This is to export the graphs as weights are trained
## drawWeights(self.exp,weights,query_type+"_weights_"+str(GLOBAL_FILE_COUNTER))
## drawScoreProgression(self.exp,{self.exp["metric"]:score_progression},query_type+"_"+str(GLOBAL_FILE_COUNTER))
GLOBAL_FILE_COUNTER += 1
passes += 1
scores = self.measurePrecomputedResolution(
train_set, method, addExtraWeights(weights, self.exp), query_type
)
this_score = scores[0][self.exp["metric"]]
## if split_fold is not None:
## split_set_str="_s"+str(split_fold)
## else:
## split_set_str=""
## print "Weight inialization:",weight_initalization
improvement = (
100 * ((this_score - first_baseline) / float(first_baseline)) if first_baseline > 0 else 0
)
print(
" Weights found, with score: {:.5f}".format(this_score),
" Improvement: {:.2f}%".format(improvement),
)
best_weights[query_type][method] = addExtraWeights(weights, self.exp)
print(" ", weights.values())
if self.exp.get("smooth_weights", None):
# this is to smooth a bit the weights in case they're too crazy
for weight in best_weights[query_type][method]:
amount = abs(min(1, best_weights[query_type][method][weight]) / float(3))
if best_weights[query_type][method][weight] > 1:
best_weights[query_type][method][weight] -= amount
elif best_weights[query_type][method][weight] < 1:
best_weights[query_type][method][weight] += amount
res[weight_initalization] = this_score
results_compare.append(res)
## better=0
## diff=0
## for res in results_compare:
## if res["random"] > res[1]:
## better+=1
## diff+=res[1]-res["random"]
## print "Random inialization better than dynamic setting",better,"times"
## print "Avg difference between methods:",diff/float(len(results_compare))
for init_method in initialization_methods:
if len(results_compare) > 0:
avg = sum([res[init_method] for res in results_compare]) / float(len(results_compare))
else:
avg = 0
print("Avg for ", init_method, ":", avg)
## if split_set is not None:
## split_set_str="_s"+str(split_set)
## else:
## split_set_str=""
## filename=getSafeFilename(self.exp["exp_dir"]+"weights_"+query_type+"_"+str(counter.getPossibleValues())+split_set_str+filename_add+".csv")
## data.to_csv(filename)
return best_weights
def measureScoresOfWeights(self, best_weights):
"""
Using precomputed weights from another split set, apply and report score
"""
numfolds = self.exp.get("cross_validation_folds", 2)
results = []
fold_results = []
metrics = ["avg_mrr", "avg_ndcg", "avg_precision", "precision_total"]
print("Experiment:", self.exp["name"])
print("Metric:", self.exp["metric"])
print("Weight movements:", self.exp.get("movements", None))
for split_fold in range(numfolds):
weights = best_weights[split_fold]
improvements = []
better_zones = []
better_zones_details = []
for query_type in self.exp["train_weights_for"]:
retrieval_results = self.loadPrecomputedFormulas(query_type)
if len(retrieval_results) == 0:
continue
if len(retrieval_results) < numfolds:
print("Number of results is smaller than number of folds for zone type ", query_type)
continue
cv = cross_validation.KFold(len(retrieval_results), n_folds=numfolds, shuffle=False, random_state=None)
cv = [k for k in cv] # run the generator
traincv, testcv = cv[split_fold]
if isinstance(retrieval_results, ResultIncrementalReader):
test_set = retrieval_results.subset(testcv)
elif isinstance(retrieval_results, list):
test_set = [retrieval_results[i] for i in testcv]
else:
raise ValueError("Unkown class of results")
for method in weights[query_type]:
weights_baseline = addExtraWeights(
{x: 1 for x in self.all_doc_methods[method]["runtime_parameters"]}, self.exp
)
scores = self.measurePrecomputedResolution(test_set, method, weights_baseline, query_type)
baseline_score = scores[0][self.exp["metric"]]
## print "Score for "+query_type+" weights=1:", baseline_score
result = {
"query_type": query_type,
"fold": split_fold,
"score": baseline_score,
"method": method,
"type": "baseline",
"improvement": None,
"pct_improvement": None,
"num_data_points": len(retrieval_results),
}
for metric in metrics:
result[metric] = scores[0][metric]
for weight in weights[query_type][method]:
result[weight] = 1
results.append(result)
scores = self.measurePrecomputedResolution(
test_set, method, weights[query_type][method], query_type
)
this_score = scores[0][self.exp["metric"]]
## print "Score with trained weights:",this_score
impro = this_score - baseline_score
pct_impro = 100 * (impro / baseline_score) if baseline_score != 0 else 0
improvements.append((impro * len(test_set)) / len(retrieval_results))
result = {
"query_type": query_type,
"fold": split_fold,
"score": this_score,
"method": method,
"type": "weight",
"improvement": impro,
"pct_improvement": pct_impro,
"num_data_points": len(retrieval_results),
}
if impro > 0:
better_zones.append(query_type)
better_zones_details.append((query_type, pct_impro))
for metric in metrics:
result[metric] = scores[0][metric]
for weight in weights[query_type][method]:
result[weight] = weights[query_type][method][weight]
results.append(result)
fold_result = {
"fold": split_fold,
"avg_improvement": sum(improvements) / float(len(improvements)) if len(improvements) > 0 else 0,
"num_improved_zones": len([x for x in improvements if x > 0]),
"num_zones": len(improvements),
"better_zones": better_zones,
"better_zones_details": better_zones_details,
}
fold_results.append(fold_result)
print("For fold", split_fold)
print("Average improvement:", fold_result["avg_improvement"])
print("Weights better than default in", fold_result["num_improved_zones"], "/", fold_result["num_zones"])
## print("Better zones:",better_zones)
print("Better zones, pct improvement:", better_zones_details)
xtra = "_".join(self.exp["train_weights_for"])
data = pd.DataFrame(results)
data.to_csv(self.exp["exp_dir"] + self.exp["name"] + "_improvements_" + xtra + ".csv")
fold_data = pd.DataFrame(fold_results)
fold_data.to_csv(self.exp["exp_dir"] + self.exp["name"] + "_folds_" + xtra + ".csv")
