def test_model(self, test_data, empty_solution, evaluate = False):
model_weka = None
if os.path.isfile(self.prediction_file):
print 'Model ' + self.name + ' already tested.'
elif not os.path.isfile(self.model_file):
print 'Impossible testing this model. It should be trained first.'
return
else:
print 'Starting to test_model model ' + self.name + '.'
model_weka = Classifier(jobject = serialization.read(self.model_file))
evaluation = Evaluation(data = test_data)
evaluation.test_model(classifier = model_weka, data = test_data)
predictions = evaluation.predictions()
rows = read_sheet(file_name = empty_solution)
solutions = []
for row in rows:
solution = [row['userid'], row['tweetid'], predictions.pop(0).predicted()]
solutions.append(solution)
write_the_solution_file(solutions, self.prediction_file)
print 'Model ' + self.name + ' tested.'
if evaluate == True:
if os.path.isfile(self.evaluation_file):
print 'Model ' + self.name + ' already evaluated.'
return
elif model_weka == None:
model_weka = Classifier(jobject = serialization.read(self.model_file))
evaluation = Evaluation(data = test_data)
evaluation.test_model(classifier = model_weka, data = test_data)
save_file(file_name = self.evaluation_file, content = evaluation.to_summary())
print 'Model ' + self.name + ' evaluated.'
def read_file(file_name):
tile_set_list = []
characteristic = []
jvm.start()
nmrClass = Classifier(jobject=serialization.read("models/lmt_3sd.model"))
with open(file_name) as f: # opens file
# reads in characteristic protein sequence and coverts it to expected chemical shift values
tile_characteristic = f.readline()
characteristic = re.findall(r'\b[A-Za-z]{3,4}\b', tile_characteristic)
characteristic = letters_to_numbers(characteristic)
for line in f: # reads in NMR Data
#reads each line and grabs numbers and na data
#file format "a b c d"
a, b, c, d = re.findall(r'\b\d+\.\d*\b|\bna\b', line)
# Dealing with missing data
if (a == "na"):
a = -1
if (b == "na"):
b = -1
if (c == "na"):
c = -1
if (d == "na"):
d = -1
# adds a new Tile to tile_set_list
if (not (a==-1 and b==-1 and c==-1 and d==-1)):
tile_set_list.append(Tile(a, b, c, d, nmrClass))
return tile_set_list, characteristic, nmrClass
def assign_cluster(file_location, file_out="clustered.csv", model="kmeans.model", last_filename=False):
data = read_csv_file(file_location)
check_jvm()
# load clusters
obj = serialization.read(model)
clusterer = Clusterer(jobject=obj)
# create file with cluster group
with open(file_out, 'w') as output:
for index, attrs in enumerate(data):
tmp = []
if last_filename:
inst = Instance.create_instance(attrs[:-2])
else:
inst = Instance.create_instance(attrs[1:])
pred = clusterer.cluster_instance(inst)
dist = clusterer.distribution_for_instance(inst)
if last_filename :
tmp.append(attrs[-1])
tmp.append(pred)
tmp.extend(attrs[:-2])
else:
tmp.append(attrs[0])
tmp.append(pred)
tmp.extend(attrs[1:])
print(str(index + 1) + ": label index=" +
str(pred) + ", class distribution=" + str(dist))
output.write('%s\n'%(','.join(map(str,tmp)) ))
def main():
"""
Just runs some example code.
"""
# load a dataset
iris_file = helper.get_data_dir() + os.sep + "iris.arff"
helper.print_info("Loading dataset: " + iris_file)
loader = Loader("weka.core.converters.ArffLoader")
iris_data = loader.load_file(iris_file)
iris_data.class_is_last()
# train classifier
classifier = Classifier("weka.classifiers.trees.J48")
classifier.build_classifier(iris_data)
# save and read object
helper.print_title("I/O: single object")
outfile = tempfile.gettempdir() + os.sep + "j48.model"
serialization.write(outfile, classifier)
model = Classifier(jobject=serialization.read(outfile))
print(model)
# save classifier and dataset header (multiple objects)
helper.print_title("I/O: single object")
serialization.write_all(outfile, [classifier, Instances.template_instances(iris_data)])
objects = serialization.read_all(outfile)
for i, obj in enumerate(objects):
helper.print_info("Object #" + str(i+1) + ":")
if javabridge.get_env().is_instance_of(obj, javabridge.get_env().find_class("weka/core/Instances")):
obj = Instances(jobject=obj)
elif javabridge.get_env().is_instance_of(obj, javabridge.get_env().find_class("weka/classifiers/Classifier")):
obj = Classifier(jobject=obj)
print(obj)
def assign_classify(file_location, output="classified.out", model="naivebayes.model"):
data = read_csv_file(file_location)
jvm.start()
# load clusters
obj = serialization.read(model)
classifier = Classifier(jobject=obj)
# create file with cluster group
with open(output, 'w') as cluster_file:
for index, attrs in enumerate(data):
inst = Instance.create_instance(attrs[1:])
pred = classifier.classify_instance(inst)
print(str(index + 1) + ": label index=" + str(pred))
jvm.stop()
def query_instance(attributes, model="kmeans.model"):
"""
get the cluster for defined attributes
:params attributes: array or list
:returns: cluster id
"""
check_jvm()
# create instance
inst = Instance.create_instance(attributes)
# load model
obj = serialization.read(model)
# load cluster and get the cluster_id
cluster = Clusterer(jobject=obj)
cluster_id = cluster.cluster_instance(inst)
return cluster_id
def train_model(self, training_data):
model_weka = None
if os.path.isfile(self.model_file):
print 'Model ' + self.name + ' already trained.'
else:
print 'Starting to train_model model ' + self.name + '.'
model_weka = Classifier(classname = self.classname, options = self.options)
model_weka.build_classifier(data = training_data)
serialization.write(filename = self.model_file, jobject = model_weka)
print 'Model ' + self.name + ' trained and saved.'
if os.path.isfile(self.parameter_file):
print 'Parameters of the model ' + self.name + ' already saved.'
else:
if model_weka == None:
model_weka = Classifier(jobject = serialization.read(self.model_file))
save_file(file_name = self.parameter_file, content = str(model_weka))
print 'Parameters of the model ' + self.name + ' saved.'
def test_read_write(self):
"""
Tests methods read and write.
"""
fname = self.tempfile("readwrite.ser")
self.delfile(fname)
lin = ["A", "B", "C", "D"]
vin = javabridge.make_instance("java/util/Vector", "()V")
for element in lin:
javabridge.call(vin, "add", "(Ljava/lang/Object;)Z", element)
serialization.write(fname, vin)
self.assertTrue(os.path.exists(fname), msg="Failed to write to " + fname + "?")
vout = serialization.read(fname)
self.assertIsNotNone(vout, msg="Failed to read from " + fname + "?")
enm = javabridge.call(vin, "elements", "()Ljava/util/Enumeration;")
lout = typeconv.enumeration_to_list(enm)
self.delfile(fname)
self.assertEqual(lin, lout, msg="Input/output differ")
def read_model_weka(path):
return Classifier(jobject=serialization.read(path))
def load_prediction_model(self, path_prediction_model):
return read(path_prediction_model)
def load_model(fname, dir_name):
outfile = realpath(join(dir_name, fname))
model = Classifier(jobject=serialization.read(outfile))
return model
def classify():
loader = Loader(classname="weka.core.converters.ArffLoader")
dataset20x20 = loader.load_file("preprocessed/notes/20x20.arff")
dataset20x20.class_is_last()
dataset20x50 = loader.load_file("preprocessed/notes/20x50.arff")
dataset20x50.class_is_last()
dataset50x20 = loader.load_file("preprocessed/notes/50x20.arff")
dataset50x20.class_is_last()
model20x20 = Classifier(jobject=serialization.read("nn20x20.model"))
model35x20 = Classifier(jobject=serialization.read("nn20x50.model"))
model50x20 = Classifier(jobject=serialization.read("nn50x20.model"))
nn1 = model20x20
nn2 = model35x20
nn3 = model50x20
class1 = []
class2 = []
class3 = []
for index, inst in enumerate(dataset20x20):
pred1 = nn1.classify_instance(inst)
class1.append(pred1)
for index, inst in enumerate(dataset20x50):
pred2 = nn2.classify_instance(inst)
class2.append(pred2)
for index, inst in enumerate(dataset50x20):
pred3 = nn3.classify_instance(inst)
class3.append(pred3)
for i in range(len(class1)):
if os.path.isfile('preprocessed/notes/note' + '%s' % (i) + '.png'):
img = cv2.imread('preprocessed/notes/note' + '%s' % (i) + '.png',
0)
#cv2.imshow('Note' + '%s' % (i) , cv2.resize(img,(200,200)))
if not os.path.isfile("classified/vote_log.csv"):
header()
values = []
print "NOTE", i, ":"
print " nn1:", noteName(class1[i])
print " nn2:", noteName(class2[i])
print " nn3:", noteName(class3[i])
values.append("note" + str(i) + ".png")
values.append(" ")
values.append(noteName(class1[i]))
values.append(noteName(class2[i]))
values.append(noteName(class3[i]))
cv2.imwrite("1_%s" % noteName(class1[i]) + "/note%s" % i + ".png",
img)
cv2.imwrite("2_%s" % noteName(class2[i]) + "/note%s" % i + ".png",
img)
cv2.imwrite("3_%s" % noteName(class2[i]) + "/note%s" % i + ".png",
img)
if class1[i] == class2[i]:
print "MAJORITY VOTE:", noteName(class1[i])
cv2.imwrite(
"classified/" + "%s" % noteName(class1[i]) +
"/note%s" % i + ".png", img)
values.append(noteName(class1[i]))
elif class1[i] == class3[i]:
print "MAJORITY VOTE:", noteName(class1[i])
cv2.imwrite(
"classified/" + "%s" % noteName(class1[i]) +
"/note%s" % i + ".png", img)
values.append(noteName(class1[i]))
elif class2[i] == class3[i]:
print "MAJORITY VOTE:", noteName(class2[i])
cv2.imwrite(
"classified/" + "%s" % noteName(class2[i]) +
"/note%s" % i + ".png", img)
values.append(noteName(class2[i]))
else:
print "No classification"
cv2.imwrite("noClassification/note%s" % i + ".png", img)
values.append("no classification")
print "\n"
writer = csv.writer(open("classified/vote_log.csv", 'ab'))
writer.writerows([values])
cv2.waitKey(0)
def loadModel(modelPath):
model = Classifier(jobject=sr.read(modelPath))
return model
def main():
global stop_spinning, name, upper_clothing, lower_clothing, outer_clothing, shoes_clothing, upper_indices, lower_indices, outer_indices, shoes_indices
'''
Classifies clothing using stored classification models for each user
'''
FSM = ClothingFSM()
#FSM.username_server()
clothingdb = MySQLdb.connect(host="localhost",
user="******",
passwd="mypassword", # Change to your SQL DB password
db = "userprofiles")
cursor = clothingdb.cursor()
cursor.execute("SELECT * FROM clothing")
name = "Study"
#Populate clothing dictionaries with user's wardrobe
for row in cursor.fetchall():
print str(row[2])
print str(row[6])
if str(row[0]) == name:
if str(row[1]) == "Upper Body":
try:
upper_clothing[row[2]].append(row[6])
except:
print "Problem appending clothing to dictionary"
if str(row[1]) == "Lower Body":
try:
lower_clothing[row[3]].append(row[6])
except:
print "Problem appending clothing to dictionary"
if str(row[1]) == "Outerwear":
try:
outer_clothing[row[4]].append(row[6])
except:
print "Problem appending clothing to dictionary"
if str(row[1]) == "Shoes":
try:
shoes_clothing[row[5]].append(row[6])
except:
print "Problem appending clothing to dictionary"
print upper_clothing, lower_clothing, outer_clothing, shoes_clothing
# FSM.received_user_info()
#In final program, we will receive this information from database
#Set to true or false if receiving features vs testing defaults
receive_features = True
if receive_features == False:
#Wait to Receive input
#Example inputs from user/weather API
features['casual_formal'] = 3
#5 is very comfortable 1 is not comfortable
features['comfort'] = 3
#1 is not snowing 2 is light snow 3 is heavy snow
features['snow'] = 1
#1 is not raining 3 is raining(no medium)
features['rain'] = 3
#If user is spending their time mostly outside, set warmth to outsidewarmth. If not, set warmth
features['warmth'] = 1
features['outside_warmth'] = 4
#1 is no 0 is yes
features['athletic'] = 1
snowstring = ''
rainstring = ''
athleticstring = ''
else:
FSM.features_server()
upper_array = [None] * 14
lower_array = [None] * 7
outer_array = [None] * 3
shoes_array = [None] * 4
upper_prediction_array = []
lower_prediction_array = []
outer_prediction_array = []
shoes_prediction_array = []
warmth_att = Attribute.create_numeric("Warmth")
comfort_att = Attribute.create_numeric("Comfort")
casual_att = Attribute.create_numeric("Casual")
rain_att = Attribute.create_numeric("Rain")
snow_att = Attribute.create_numeric("Snow")
athletic_att = Attribute.create_numeric("Athletic")
upper_attributes = [warmth_att, casual_att, comfort_att, athletic_att]
lower_attributes = [warmth_att, casual_att, comfort_att, athletic_att]
outer_attributes = [warmth_att, casual_att, comfort_att, snow_att, rain_att]
shoes_attributes = [casual_att, comfort_att, athletic_att]
Instances.create_instances("upper_instances", upper_attributes, 0)
Instances.create_instances("lower_instances", lower_attributes, 0)
Instances.create_instances("outer_instances", outer_attributes, 0)
Instances.create_instances("shoes_instances", shoes_attributes, 0)
#Simulate their wardrobe
#Upper
# Tank Top
if len(upper_clothing['Tank Top']) == 0:
upper_array[0] = 0
else:
upper_array[0] = 1
# T-Shirt
if len(upper_clothing['T-Shirt']) == 0:
upper_array[1] = 0
else:
upper_array[1] = 1
# Long-Sleeved Shirt
if len(upper_clothing['Long-sleeved Shirt']) == 0:
upper_array[2] = 0
else:
upper_array[2] = 1
# Athletic Top
if len(upper_clothing['Athletic Top']) == 0:
upper_array[3] = 0
else:
upper_array[3] = 1
# Button-down Shirt
if len(upper_clothing['Button-down Shirt']) == 0:
upper_array[4] = 0
else:
upper_array[4] = 1
# Polo Shirt
if len(upper_clothing['Polo Shirt']) == 0:
upper_array[5] = 0
else:
upper_array[5] = 1
# Dress Shirt
if len(upper_clothing['Dress Shirt']) == 0:
upper_array[6] = 0
else:
upper_array[6] = 1
# Suit Jacket
if len(upper_clothing['Suit Jacket']) == 0:
upper_array[7] = 0
else:
upper_array[7] = 1
# Blazer
if len(upper_clothing['Blazer']) == 0:
upper_array[8] = 0
else:
upper_array[8] = 1
# Hoodie
if len(upper_clothing['Hoodie']) == 0:
upper_array[9] = 0
else:
upper_array[9] = 1
# Sweater
if len(upper_clothing['Sweater']) == 0:
upper_array[10] = 0
else:
upper_array[10] = 1
# Blouse
if len(upper_clothing['Blouse']) == 0:
upper_array[11] = 0
else:
upper_array[11] = 1
# Day Dress
if len(upper_clothing['Day Dress']) == 0:
upper_array[12] = 0
else:
upper_array[12] = 1
# Evening Dress
if len(upper_clothing['Evening Dress']) == 0:
upper_array[13] = 0
else:
upper_array[13] = 1
#Lower
# Regular Shorts
if len(lower_clothing['Shorts']) == 0:
lower_array[0] = 0
else:
lower_array[0] = 1
# Athletic Shorts
if len(lower_clothing['Athletic Shorts']) == 0:
lower_array[1] = 0
else:
lower_array[1] = 1
# Athletic Pants
if len(lower_clothing['Athletic Pants']) == 0:
lower_array[2] = 0
else:
lower_array[2] = 1
# Jeans
if len(lower_clothing['Jeans']) == 0:
lower_array[3] = 0
else:
lower_array[3] = 1
# Trousers
if len(lower_clothing['Trousers']) == 0:
lower_array[4] = 0
else:
lower_array[4] = 1
# Skirt
if len(lower_clothing['Skirt']) == 0:
lower_array[5] = 0
else:
lower_array[5] = 1
# Dress Pants
if len(lower_clothing['Dress Pants']) == 0:
lower_array[6] = 0
else:
lower_array[6] = 1
#Outer
# Light Jacket
if len(outer_clothing['Light Jacket']) == 0:
outer_array[0] = 0
else:
outer_array[0] = 1
# Heavy Jacket
if len(outer_clothing['Winter Jacket']) == 0:
outer_array[1] = 0
else:
outer_array[1] = 1
# Rain Jacket
if len(outer_clothing['Rain Jacket']) == 0:
outer_array[2] = 0
else:
outer_array[2] = 1
#Shoes
# Casual Shoes
if len(shoes_clothing['Casual Shoes']) == 0:
shoes_array[0] = 0
else:
shoes_array[0] = 1
# Athletic Shoes
if len(shoes_clothing['Athletic Shoes']) == 0:
shoes_array[1] = 0
else:
shoes_array[1] = 1
# Dress Shoes
if len(shoes_clothing['Dress Shoes']) == 0:
shoes_array[2] = 0
else:
shoes_array[2] = 1
# Dressy Casual Shoes
if len(shoes_clothing['Business Casual Shoes']) == 0:
shoes_array[3] = 0
else:
shoes_array[3] = 1
upper_list = [features['outside_warmth'], features['casual_formal'], features['comfort'], features['athletic']]
lower_list = [features['outside_warmth'], features['casual_formal'], features['comfort'], math.fabs(1-features['athletic'])]
outer_list = [features['outside_warmth'], features['casual_formal'], features['comfort'], features['rain'], features['snow']]
shoes_list = [features['casual_formal'], features['comfort'], math.fabs(1-features['athletic'])]
upper_instance = Instance.create_instance(upper_list, classname='weka.core.DenseInstance', weight= 1.0)
lower_instance = Instance.create_instance(lower_list, classname='weka.core.DenseInstance', weight= 1.0)
outer_instance = Instance.create_instance(outer_list, classname='weka.core.DenseInstance', weight= 1.0)
shoes_instance = Instance.create_instance(shoes_list, classname='weka.core.DenseInstance', weight= 1.0)
upper_path = '/home/leo/models/uppermodel2.model'
lower_path = '/home/leo/models/lowermodel2.model'
outer_path = '/home/leo/models/outermodel2.model'
shoes_path = '/home/leo/models/shoesmodel7.model'
upper_classifier = Classifier(jobject=serialization.read(upper_path))
lower_classifier = Classifier(jobject=serialization.read(lower_path))
outer_classifier = Classifier(jobject=serialization.read(outer_path))
shoes_classifier = Classifier(jobject=serialization.read(shoes_path))
upper_predictions = upper_classifier.distribution_for_instance(upper_instance)
lower_predictions = lower_classifier.distribution_for_instance(lower_instance)
outer_predictions = outer_classifier.distribution_for_instance(outer_instance)
shoes_predictions = shoes_classifier.distribution_for_instance(shoes_instance)
if features['rain'] == 1:
rainstring = 'No'
if features['rain'] == 3:
rainstring = 'Yes'
if features['snow'] == 1:
snowstring = 'No'
if features['snow'] == 3:
snowstring = 'Yes'
if features['athletic'] == 1:
athleticstring = 'No'
if features['athletic'] == 0:
athleticstring = 'Yes'
print "Features being Classified:"
print "Outside Warmth:", features['outside_warmth'], "Inside-Outside:", features['inside_outside'], "Casual-Formal:", features['casual_formal'], "Comfort:", features['comfort'], "Athletic:", athleticstring, "Rain:", rainstring, "Snow:", snowstring
#Remove Clothing Options User Doesn't Own
for i in range(len(upper_array)):
if upper_array[i] == 0:
upper_prediction_array.append(0)
else:
upper_prediction_array.append(upper_predictions[i])
for i in range(len(lower_array)):
if lower_array[i] == 0:
lower_prediction_array.append(0)
else:
lower_prediction_array.append(lower_predictions[i])
for i in range(len(outer_array)):
if outer_array[i] == 0:
outer_prediction_array.append(0)
else:
outer_prediction_array.append(outer_predictions[i])
for i in range(len(shoes_array)):
if shoes_array[i] == 0:
shoes_prediction_array.append(0)
else:
shoes_prediction_array.append(shoes_predictions[i])
#Find the top 3 options for each classifier
max_index_upper1 = 0
max_index_upper2 = 0
max_index_upper3 = 0
max_index_upper4 = 0
max_index_upper5 = 0
for i in range(1,len(upper_prediction_array)):
n = upper_prediction_array[max_index_upper1]
if upper_prediction_array[i] > n:
max_index_upper1 = i
upper_prediction_array[max_index_upper1] = 0
for i in range(1, len(upper_prediction_array)):
n = upper_prediction_array[max_index_upper2]
if upper_prediction_array[i] > n:
max_index_upper2 = i
upper_prediction_array[max_index_upper2] = 0
for i in range(1, len(upper_prediction_array)):
n = upper_prediction_array[max_index_upper3]
if upper_prediction_array[i] > n:
max_index_upper3 = i
upper_prediction_array[max_index_upper3] = 0
for i in range(1, len(upper_prediction_array)):
n = upper_prediction_array[max_index_upper4]
if upper_prediction_array[i] > n:
max_index_upper4 = i
upper_prediction_array[max_index_upper4] = 0
for i in range(1, len(upper_prediction_array)):
n = upper_prediction_array[max_index_upper5]
if upper_prediction_array[i] > n:
max_index_upper5 = i
upper_indices = [max_index_upper1, max_index_upper2, max_index_upper3, max_index_upper4, max_index_upper5]
max_index_lower1 = 0
max_index_lower2 = 0
max_index_lower3 = 0
max_index_lower4 = 0
max_index_lower5 = 0
for i in range(1,len(lower_prediction_array)):
n = lower_prediction_array[max_index_lower1]
if lower_prediction_array[i] > n:
max_index_lower1 = i
lower_prediction_array[max_index_lower1] = 0
for i in range(1,len(lower_prediction_array)):
n = lower_prediction_array[max_index_lower2]
if lower_prediction_array[i] > n:
max_index_lower2 = i
lower_prediction_array[max_index_lower2] = 0
for i in range(1,len(lower_prediction_array)):
n = lower_prediction_array[max_index_lower3]
if lower_prediction_array[i] > n:
max_index_lower3 = i
lower_prediction_array[max_index_lower3] = 0
for i in range(1, len(lower_prediction_array)):
n = lower_prediction_array[max_index_lower4]
if lower_prediction_array[i] > n:
max_index_upper4 = i
lower_prediction_array[max_index_lower4] = 0
for i in range(1, len(lower_prediction_array)):
n = lower_prediction_array[max_index_lower5]
if lower_prediction_array[i] > n:
max_index_lower5 = i
lower_indices = [max_index_lower1, max_index_lower2, max_index_lower3, max_index_lower4, max_index_lower5]
max_index_outer1 = 0
max_index_outer2 = 0
max_index_outer3 = 0
for i in range(1, len(outer_prediction_array)):
n = outer_prediction_array[max_index_outer1]
if outer_prediction_array[i] > n:
max_index_outer1 = i
outer_prediction_array[max_index_outer1] = 0
for i in range(1, len(outer_prediction_array)):
n = outer_prediction_array[max_index_outer2]
if outer_prediction_array[i] > n:
max_index_outer2 = i
outer_prediction_array[max_index_outer2] = 0
for i in range(1, len(outer_prediction_array)):
n = outer_prediction_array[max_index_outer3]
if outer_prediction_array[i] > n:
max_index_outer3 = i
outer_indices = [max_index_outer1, max_index_outer2, max_index_outer3]
max_index_shoes1 = 0
max_index_shoes2 = 0
max_index_shoes3 = 0
max_index_shoes4 = 0
for i in range(1, len(shoes_prediction_array)):
n = shoes_prediction_array[max_index_shoes1]
if shoes_prediction_array[i] > n:
max_index_shoes1 = i
shoes_prediction_array[max_index_shoes1] = 0
for i in range(1, len(shoes_prediction_array)):
n = shoes_prediction_array[max_index_shoes2]
if shoes_prediction_array[i] > n:
max_index_shoes2 = i
shoes_prediction_array[max_index_shoes2] = 0
for i in range(1, len(shoes_prediction_array)):
n = shoes_prediction_array[max_index_shoes3]
if shoes_prediction_array[i] > n:
max_index_shoes3 = i
shoes_prediction_array[max_index_shoes3] = 0
for i in range(1, len(shoes_prediction_array)):
n = shoes_prediction_array[max_index_shoes4]
if shoes_prediction_array[i] > n:
max_index_shoes4 = i
shoes_indices = [max_index_shoes1, max_index_shoes2, max_index_shoes3, max_index_shoes4]
print "Outer Indices:", outer_indices
FSM.received_inputs()
print "Exiting Program"
def test(objs, paras, testfile1, pred, real):
testfile = preprocess(testfile1, True)
xref = {'x_nT':1,'x_nT_delta':0,'x_nK':1,'x_nK_delta':0,'x_long':1,'x_str':0,'x_strsum':0}
add_features(xref, 'x')
zeroref = []
for k in ['long', 'nK', 'nK_delta', 'nT', 'nT_delta', 'str', 'strsum']:
zeroref.append(xref['x_%s' % k])
zeroref.append(0) # should be obj
for k in addf():
zeroref.append(xref['x_%s' % k])
with open(testfile) as fin:
reader = csv.DictReader(fin)
linecount = 0
for line in reader:
ops = []
for h in line:
if h.startswith('op'): ops.append(h[:h.find('_')])
for op in ops: add_features(line, op)
stats = {}
valid = True
real_line = {}
for h in line:
if h.startswith('op'):
k = h[:h.find('_')]
v = h[h.find('_')+1:]
if k not in stats: stats[k] = {}
stats[k][v] = pfloat(line[h])
if stats[k][v] is None:
valid = False
elif h in objs:
real_line[h] = pfloat(line[h])
if real_line[h] is None:
valid = False
if not valid: continue
linecount += 1
if linecount > 250: continue
#for k in stats:
# assert len(paras) == len(stats[k])
# for v in stats[k]:
# assert v in paras
for obj in objs:
c = Classifier(jobject=serialization.read(model_file('hash', obj)))
zerovalue = c.classify_instance(Instance.create_instance(zeroref))
#s = 0
s = zerovalue
for op in stats:
values = []
for k in ['long', 'nK', 'nK_delta', 'nT', 'nT_delta', 'str', 'strsum']:
values.append(stats[op][k])
values.append(0) # should be obj
for k in addf():
values.append(stats[op][k])
ins = Instance.create_instance(values)
prediction = c.classify_instance(ins)
#print ' ', obj, op, values, prediction, prediction - zerovalue
#s += pred
s = s + max(prediction - zerovalue, 0)
#print obj, 'real', real_line[obj], 'pred', s
pred[obj].append(s)
real[obj].append(real_line[obj])
print 'test', testfile, 'linecount', linecount
subprocess.call('rm %s' % testfile, shell=True)
def loadClusterModel(self, method, mname):
finalname = "%s_%s.model" % (method, mname)
cluster = Clusterer(jobject=serialization.read(os.path.join(self.modelDir, finalname)))
logger.info('[%s] : [INFO] Loaded clusterer mode %s ',
datetime.fromtimestamp(time.time()).strftime('%Y-%m-%d %H:%M:%S'), finalname)
return cluster
def loadFilter(filterPath):
filter = Filter(jobject=sr.read(filterPath))
return filter
def train(request):
jvm.start()
d_att1 = Attribute.create_numeric("bodydearword.feature")
d_att2 = Attribute.create_numeric("bodyform.feature")
d_att3 = Attribute.create_numeric("bodyhtml.feature")
d_att4 = Attribute.create_numeric("bodymultipart.feature")
d_att5 = Attribute.create_numeric("bodynumchars.feature")
d_att6 = Attribute.create_numeric("bodynumfunctionwords.feature")
d_att7 = Attribute.create_numeric("bodynumuniqwords.feature")
d_att8 = Attribute.create_numeric("bodynumwords.feature")
d_att9 = Attribute.create_numeric("bodyrichness.feature")
d_att10 = Attribute.create_numeric("bodysuspensionword.feature")
d_att11 = Attribute.create_numeric("bodyverifyyouraccountphrase.feature")
d_att12 = Attribute.create_numeric("externalsabinary.feature")
d_att13 = Attribute.create_numeric("externalsascore.feature")
d_att14 = Attribute.create_numeric("scriptjavascript.feature")
d_att15 = Attribute.create_numeric("scriptonclick.feature")
d_att16 = Attribute.create_numeric("scriptpopup.feature")
d_att17 = Attribute.create_numeric("scriptstatuschange.feature")
d_att18 = Attribute.create_numeric("scriptunmodalload.feature")
d_att19 = Attribute.create_numeric("senddiffreplyto.feature")
d_att20 = Attribute.create_numeric("sendnumwords.feature")
d_att21 = Attribute.create_numeric("sendunmodaldomain.feature")
d_att22 = Attribute.create_numeric("subjectbankword.feature")
d_att23 = Attribute.create_numeric("subjectdebitword.feature")
d_att24 = Attribute.create_numeric("subjectfwdword.feature")
d_att25 = Attribute.create_numeric("subjectnumchars.feature")
d_att26 = Attribute.create_numeric("subjectnumwords.feature")
d_att27 = Attribute.create_numeric("subjectreplyword.feature")
d_att28 = Attribute.create_numeric("subjectrichness.feature")
d_att29 = Attribute.create_numeric("subjectverifyword.feature")
d_att30 = Attribute.create_numeric("urlatchar.feature")
d_att31 = Attribute.create_numeric("urlbaglink.feature")
d_att32 = Attribute.create_numeric("urlip.feature")
d_att33 = Attribute.create_numeric("urlnumdomains.feature")
d_att34 = Attribute.create_numeric("urlnumexternallink.feature")
d_att35 = Attribute.create_numeric("urlnumimagelink.feature")
d_att36 = Attribute.create_numeric("urlnuminternallink.feature")
d_att37 = Attribute.create_numeric("urlnumip.feature")
d_att38 = Attribute.create_numeric("urlnumlink.feature")
d_att39 = Attribute.create_numeric("urlnumperiods.feature")
d_att40 = Attribute.create_numeric("urlnumport.feature")
d_att41 = Attribute.create_numeric("urlport.feature")
d_att42 = Attribute.create_numeric("urltwodoains.feature")
d_att43 = Attribute.create_numeric("urlunmodalbaglink.feature")
d_att44 = Attribute.create_numeric("urlwordclicklink.feature")
d_att45 = Attribute.create_numeric("urlwordherelink.feature")
d_att46 = Attribute.create_numeric("urlwordloginlink.feature")
d_att47 = Attribute.create_numeric("urlwordupdatelink.feature")
d_att48 = Attribute.create_nominal("class", {'phish', 'ham'})
#
data_dir = settings.BASE_DIR + "/phishing/public/datasets/"
#
loader = Loader(classname="weka.core.converters.ArffLoader")
data = loader.load_file(data_dir + "dataset.arff")
data.class_is_last()
cls = Classifier(classname="weka.classifiers.trees.J48")
cls.options = ["-C", "0.3"]
cls.build_classifier(data)
serialization.write(data_dir + "out.model", cls)
classifier = Classifier(jobject=serialization.read(data_dir + "out.model"))
dataset = Instances.create_instances("test", [
d_att1, d_att2, d_att3, d_att4, d_att5, d_att6, d_att7, d_att8, d_att9,
d_att10, d_att11, d_att12, d_att13, d_att14, d_att15, d_att16, d_att17,
d_att18, d_att19, d_att20, d_att21, d_att22, d_att23, d_att24, d_att25,
d_att26, d_att27, d_att28, d_att29, d_att30, d_att31, d_att32, d_att33,
d_att34, d_att35, d_att36, d_att37, d_att38, d_att39, d_att40, d_att41,
d_att42, d_att43, d_att44, d_att45, d_att46, d_att47, d_att48
], 0)
values = [
0, 0, 0, 0, 890, 1, 124, 198, 0.22247191011236, 0, 0, 0, 0.0, 0, 0, 0,
0, 0, 1, 4, 0, 0, 0, 0, 21, 4, 1, 0.19047619047619, 0, 0, 0, 0, 2, 0,
0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
Instance.missing_value()
]
inst = Instance.create_instance(values)
dataset.add_instance(inst)
dataset.class_is_last()
# print(str(dataset))
var = ''
for inst1 in dataset:
pred = classifier.classify_instance(inst1)
var = inst1.class_attribute.value(int(pred))
if var == 'ham':
print('No es pishing')
# do somthing
else:
print('Es pishing')
# do somthing
print(var)
jvm.stop()
return HttpResponse(str(var))
def __init__(self, model_path, senti_path, stop_words, ngrams_path):
self.loader = Loader(classname="weka.core.converters.ArffLoader")
self.features_calculator = FeaturesCalculator(ngrams_path)
self.classifier = Classifier(jobject=serialization.read(model_path))
self.normalizer = Preprocessor(senti_path)
self.stop_words = stop_words
print(t)
jvm.start(max_heap_size="4g",packages=True)
Wtrain = converters.load_any_file("train.csv")
Wtest = converters.load_any_file("test.csv")
Wtrain.class_is_last()
Wtest.class_is_last()
if(Path('lmt.model').exists()):
lmt = Classifier(jobject=serialization.read("lmt.model"))
else:
lmt = Classifier(classname="weka.classifiers.trees.LMT")
lmt.build_classifier(Wtrain)
serialization.write("lmt.model", lmt)
evlmt = Evaluation(Wtrain)
evlmt.crossvalidate_model(lmt, Wtrain, 5, Random(1))
print("Error is",evlmt.error_rate)
cm2e = evlmt.confusion_matrix
cm2E = pd.DataFrame(cm2e, index = ["neg","pos"],columns = ["neg","pos"])
plt.figure(figsize = (7,7))
axis = sns.heatmap(cm2E, annot=True, cbar=False, cmap="Reds")