class RYR1Tests(unittest.TestCase):
def setUp(self):
reference_db = pymongo.MongoClient()['xbrowse_reference']
self.reference = Reference(reference_db,
ensembl_db_port=3001,
ensembl_db_user="******")
gene_id = self.reference.get_gene_id_from_symbol('RYR1')
self.gene = self.reference.get_gene(gene_id)
def test_biotype(self):
self.assertEqual(self.gene['biotype'], 'protein_coding')
def test_description(self):
self.assertEqual(
self.gene['description'],
'ryanodine receptor 1 (skeletal) [Source:HGNC Symbol;Acc:10483]')
def test_symbol(self):
self.assertEqual(self.gene['symbol'], 'RYR1')
def test_num_transcripts(self):
self.assertEqual(len(self.gene['transcripts']), 13)
def test_num_exons(self):
self.assertEqual(len(self.gene['exons']), 158)
class RYR1Tests(unittest.TestCase):
def setUp(self):
reference_db = pymongo.Connection().xbrowse_reference
self.reference = Reference(reference_db, ensembl_db_port=3001, ensembl_db_user="******")
gene_id = self.reference.get_gene_id_from_symbol('RYR1')
self.gene = self.reference.get_gene(gene_id)
def test_biotype(self):
self.assertEqual(self.gene['biotype'], 'protein_coding')
def test_description(self):
self.assertEqual(self.gene['description'], 'ryanodine receptor 1 (skeletal) [Source:HGNC Symbol;Acc:10483]')
def test_symbol(self):
self.assertEqual(self.gene['symbol'], 'RYR1')
def test_num_transcripts(self):
self.assertEqual(len(self.gene['transcripts']), 13)
def test_num_exons(self):
self.assertEqual(len(self.gene['exons']), 158)
