def edit(request, slug):
_gene_list = get_object_or_404(GeneList, slug=slug)
authorized = False
if _gene_list.owner == request.user:
authorized = True
if not authorized:
raise PermissionDenied
if request.method == 'POST':
form = GeneListForm(request.POST)
if form.is_valid():
_gene_list.slug=form.cleaned_data['slug']
_gene_list.name=form.cleaned_data['name']
_gene_list.description=form.cleaned_data['description']
_gene_list.is_public=form.cleaned_data['is_public']
_gene_list.last_updated = datetime.datetime.now()
_gene_list.save()
GeneListItem.objects.filter(gene_list=_gene_list).delete()
for gene_id in form.cleaned_data['gene_ids']:
GeneListItem.objects.create(gene_list=_gene_list, gene_id=gene_id)
return redirect('gene_list', slug=_gene_list.slug)
else:
form = GeneListForm(initial={
'name': _gene_list.name,
'description': _gene_list.description,
'is_public': _gene_list.is_public,
'genes': '\n'.join([g['symbol'] for g in _gene_list.get_genes()]),
})
return render(request, 'gene_lists/edit.html', {
'form': form,
'gene_list': _gene_list,
})
def add(request):
if request.method == 'POST':
form = GeneListForm(request.POST)
if form.is_valid():
unique_slug = form.cleaned_data['slug']
while GeneList.objects.filter(slug=unique_slug):
unique_slug += "_"
new_list = GeneList.objects.create(
slug=unique_slug,
name=form.cleaned_data['name'],
description=form.cleaned_data['description'],
is_public=form.cleaned_data['is_public'],
owner=request.user,
last_updated=datetime.datetime.now(),
)
for gene_id in form.cleaned_data['gene_ids']:
GeneListItem.objects.create(gene_list=new_list, gene_id=gene_id)
return redirect('gene_list', slug=new_list.slug)
else:
form = GeneListForm()
return render(request, 'gene_lists/add.html', {
'form': form,
})
def edit(request, slug):
_gene_list = get_object_or_404(GeneList, slug=slug)
authorized = False
if _gene_list.owner == request.user:
authorized = True
if not authorized:
return HttpResponse('unauthorized')
if request.method == 'POST':
form = GeneListForm(request.POST)
if form.is_valid():
_gene_list.slug=form.cleaned_data['slug']
_gene_list.name=form.cleaned_data['name']
_gene_list.description=form.cleaned_data['description']
_gene_list.is_public=form.cleaned_data['is_public']
_gene_list.last_updated = datetime.datetime.now()
_gene_list.save()
GeneListItem.objects.filter(gene_list=_gene_list).delete()
for gene_id in form.cleaned_data['gene_ids']:
GeneListItem.objects.create(gene_list=_gene_list, gene_id=gene_id)
return redirect('gene_list', slug=_gene_list.slug)
else:
form = GeneListForm(initial={
'name': _gene_list.name,
'description': _gene_list.description,
'is_public': _gene_list.is_public,
'genes': '\n'.join([g['symbol'] for g in _gene_list.get_genes()]),
})
return render(request, 'gene_lists/edit.html', {
'form': form,
'gene_list': _gene_list,
})
def add(request):
if request.method == 'POST':
form = GeneListForm(request.POST)
if form.is_valid():
unique_slug = form.cleaned_data['slug']
while GeneList.objects.filter(slug=unique_slug):
unique_slug += "_"
new_list = create_xbrowse_model(GeneList,
slug=unique_slug,
name=form.cleaned_data['name'],
description=form.cleaned_data['description'],
is_public=form.cleaned_data['is_public'],
owner=request.user,
last_updated=datetime.datetime.now(),
)
for gene_id in form.cleaned_data['gene_ids']:
create_xbrowse_model(GeneListItem, gene_list=new_list, gene_id=gene_id)
return redirect('gene_list', slug=new_list.slug)
else:
form = GeneListForm()
return render(request, 'gene_lists/add.html', {
'form': form,
'new_page_url': '/gene_lists',
})
def add(request):
if request.method == 'POST':
form = GeneListForm(request.POST)
if form.is_valid():
new_list = GeneList.objects.create(
slug=form.cleaned_data['slug'],
name=form.cleaned_data['name'],
description=form.cleaned_data['description'],
is_public=form.cleaned_data['is_public'],
owner=request.user,
last_updated=datetime.datetime.now(),
)
for gene_id in form.cleaned_data['gene_ids']:
GeneListItem.objects.create(gene_list=new_list, gene_id=gene_id)
return redirect('gene_list', slug=new_list.slug)
else:
form = GeneListForm()
return render(request, 'gene_lists/add.html', {
'form': form,
})
def edit(request, slug):
gene_list = get_object_or_404(GeneList, slug=slug)
authorized = False
if gene_list.owner == request.user:
authorized = True
if not authorized:
raise PermissionDenied
if request.method == 'POST':
form = GeneListForm(request.POST)
if form.is_valid():
update_xbrowse_model(gene_list,
slug=form.cleaned_data['slug'],
name=form.cleaned_data['name'],
description=form.cleaned_data['description'],
is_public=form.cleaned_data['is_public'],
last_updated = datetime.datetime.now())
for gene_list_item in GeneListItem.objects.filter(gene_list=gene_list):
delete_xbrowse_model(gene_list_item)
for gene_id in form.cleaned_data['gene_ids']:
create_xbrowse_model(GeneListItem, gene_list=gene_list, gene_id=gene_id)
return redirect('gene_list', slug=gene_list.slug)
else:
form = GeneListForm(initial={
'name': gene_list.name,
'description': gene_list.description,
'is_public': gene_list.is_public,
'genes': '\n'.join([g['symbol'] for g in gene_list.get_genes()]),
})
return render(request, 'gene_lists/edit.html', {
'form': form,
'gene_list': gene_list,
'new_page_url': '/gene_lists/{}'.format(gene_list.seqr_locus_list.guid) if gene_list.seqr_locus_list else None,
})
