Ejemplo n.º 1
0
    def convertToDaveXMLPrimitives(self, primitives_xml, flat_sequence):
        if self.verbose:
            print "---------------------------------------------------------"
            print "Converting to Dave Primitives"

        # Loop over all children
        for child in flat_sequence:
            if child.tag == "branch":  # Generate block and call recursively to handle elements in blocks
                branch = ElementTree.SubElement(primitives_xml, "branch")
                branch.attrib["name"] = child.attrib["name"]
                self.convertToDaveXMLPrimitives(branch, child)

            elif child.tag == "movie":  # Handle <movie> tag
                movie_block = ElementTree.SubElement(primitives_xml, "branch")
                name = child.find("name")

                # Determine name.
                if name is not None:
                    movie_block.set("name", name.text)
                else:
                    movie_block.set("name", "No Name Provided")

                # Determine dictionary
                movie_dict = nodeToDict.movieNodeToDict(child)
                for action in self.movie_da_actions:
                    new_node = action.createETree(movie_dict)
                    if new_node is not None:
                        movie_block.append(new_node)

            elif child.tag == "valve_protocol":  # Handle <valve_protocol> tag
                new_node = daveActions.DAValveProtocol().createETree(
                    {"name": child.text})
                if new_node is not None:
                    primitives_xml.append(new_node)

            elif child.tag == "change_directory":  # Handle change_directory tag
                new_node = daveActions.DASetDirectory().createETree(
                    {"directory": child.text})
                if new_node is not None:
                    primitives_xml.append(new_node)

            elif child.tag == "clear_warnings":  # Handle the clear_warnings tag
                new_node = daveActions.DAClearWarnings().createETree({})
                if new_node is not None:
                    primitives_xml.append(new_node)

            elif child.tag == "email":  # Handle the email tag
                # Grab the elements of this node and create a dictionary
                dictionary = {"subject": None, "body": None}
                for subChild in child:
                    dictionary[subChild.tag] = subChild.text

                # Create node
                new_node = daveActions.DAEmail().createETree(dictionary)

                if new_node is not None:
                    primitives_xml.append(new_node)
            else:
                pass
Ejemplo n.º 2
0
    def convertToDaveXMLPrimitives(self, primitives_xml, flat_sequence, base_dir = "", create_dir = False):
        if self.verbose:
            print "---------------------------------------------------------"
            print "Converting to Dave Primitives"
        
        # Loop over all children
        for child in flat_sequence:
            if child.tag == "branch": # Generate block and call recursively to handle elements in blocks
                branch = ElementTree.SubElement(primitives_xml, "branch")
                branch.attrib["name"] = child.attrib["name"]
                self.convertToDaveXMLPrimitives(branch, child, base_dir = base_dir, create_dir = create_dir)
            
            elif child.tag == "movie": # Handle <movie> tag
                movie_block = ElementTree.SubElement(primitives_xml, "branch")
                name = child.find("name")

                # Determine name.
                if name is not None:
                    movie_block.set("name", name.text)
                else:
                    movie_block.set("name", "No Name Provided")

                # Determine dictionary
                movie_dict = nodeToDict.movieNodeToDict(child)
                for action in self.movie_da_actions:
                    new_node = action.createETree(movie_dict)
                    if new_node is not None:
                        movie_block.append(new_node)
            
            elif child.tag == "valve_protocol": # Handle <valve_protocol> tag
                new_node = daveActions.DAValveProtocol().createETree({"name": child.text})
                if new_node is not None:
                    primitives_xml.append(new_node)

            elif child.tag == "change_directory": # Handle change_directory tag
                directory_path = os.path.join(base_dir, child.text) if base_dir is not None else child.text
                new_node = daveActions.DASetDirectory().createETree({"directory": directory_path})
                if create_dir:
                    if create_dir == "error" and os.path.isdir(directory_path):
                        raise Exception, "Directory already exists: %s" % directory_path

                    try:
                        os.makedirs(directory_path)
                    except:
                        pass
                if new_node is not None:
                    primitives_xml.append(new_node)

            elif child.tag == "clear_warnings": # Handle the clear_warnings tag
                new_node = daveActions.DAClearWarnings().createETree({})
                if new_node is not None:
                    primitives_xml.append(new_node)
            else:
                pass
Ejemplo n.º 3
0
    def convertToDaveXMLPrimitives(self, primitives_xml, flat_sequence):
        if self.verbose:
            print "---------------------------------------------------------"
            print "Converting to Dave Primitives"
        
        # Loop over all children
        for child in flat_sequence:
            if child.tag == "branch": # Generate block and call recursively to handle elements in blocks
                branch = ElementTree.SubElement(primitives_xml, "branch")
                branch.attrib["name"] = child.attrib["name"]
                self.convertToDaveXMLPrimitives(branch, child)
            
            elif child.tag == "movie": # Handle <movie> tag
                movie_block = ElementTree.SubElement(primitives_xml, "branch")
                name = child.find("name")

                # Determine name.
                if name is not None:
                    movie_block.set("name", name.text)
                else:
                    movie_block.set("name", "No Name Provided")

                # Determine dictionary
                movie_dict = nodeToDict.movieNodeToDict(child)
                for action in self.movie_da_actions:
                    new_node = action.createETree(movie_dict)
                    if new_node is not None:
                        movie_block.append(new_node)
            
            elif child.tag == "valve_protocol": # Handle <valve_protocol> tag
                new_node = daveActions.DAValveProtocol().createETree({"name": child.text})
                if new_node is not None:
                    primitives_xml.append(new_node)

            elif child.tag == "change_directory": # Handle change_directory tag
                new_node = daveActions.DASetDirectory().createETree({"directory": child.text})
                if new_node is not None:
                    primitives_xml.append(new_node)

            elif child.tag == "clear_warnings": # Handle the clear_warnings tag
                new_node = daveActions.DAClearWarnings().createETree({})
                if new_node is not None:
                    primitives_xml.append(new_node)
            else:
                pass
Ejemplo n.º 4
0
def generate(parent, xml_file, position_file, generated_file):

    directory = os.path.dirname(xml_file)
    pause = True

    # Load position data
    pos_fp = open(position_file, "r")
    x_pos = []
    y_pos = []
    while 1:
        line = pos_fp.readline()
        if not line: break
        [x, y] = line.split(",")
        x_pos.append(float(x))
        y_pos.append(float(y))
    pos_fp.close()

    xml_in = ElementTree.parse(xml_file).getroot()

    # Load "header" info.
    x_offset = nodeToDict.gf("x_offset", [float], 0.0)(xml_in)
    y_offset = nodeToDict.gf("y_offset", [float], 0.0)(xml_in)
    delay = nodeToDict.gf("delay", [int], 0)(xml_in)

    # Create instances of all the supported actions
    # in the order in which they should occur.
    da_actions = [
        daveActions.DAMoveStage(),
        daveActions.DASetFocusLockTarget(),
        daveActions.DAFindSum(),
        daveActions.DARecenterPiezo(),
        daveActions.DASetParameters(),
        daveActions.DASetProgression(),
        daveActions.DASetDirectory(),
        daveActions.DADelay(),
        daveActions.DAPause(),
        daveActions.DATakeMovie()
    ]

    # Generate output xml tree.
    xml_out = ElementTree.Element("sequence")
    first_movie = True
    for pass_number, pass_node in enumerate(
        [x for x in xml_in if (x.tag == "pass")]):

        # Create a new block for this pass.
        pass_block = ElementTree.SubElement(xml_out, "branch")
        pass_block.set("name", "pass " + str(pass_number))

        for i in range(len(x_pos)):
            mx = x_pos[i] + x_offset
            my = y_pos[i] + y_offset

            for movie_number, movie_node in enumerate(
                [x for x in pass_node if (x.tag == "movie")]):

                #
                # Check if we need to get a filename for a power progression.
                #
                # This modifies the original node so that we don't have to keep
                # selecting a filename.
                #
                pnode = movie_node.find("progression")
                if pnode is not None:
                    if (pnode.find("type").text == "file"):
                        if pnode.find("filename") is None:
                            filename = str(
                                QtGui.QFileDialog.getOpenFileName(
                                    parent,
                                    movie_node.find("name").text +
                                    " Power File", directory, "*.power"))
                            directory = os.path.dirname(filename)
                            field = ElementTree.SubElement(pnode, "filename")
                            field.text = filename

                # Create dictionary for node.
                movie_dict = nodeToDict.movieNodeToDict(movie_node)

                # Add extra information to complete the movie node.
                total_delay = delay
                if "delay" in movie_dict:
                    total_delay += movie_dict["delay"]
                if (total_delay > 0):
                    movie_dict["delay"] = total_delay

                if first_movie:
                    movie_dict["pause"] = True
                    first_movie = False

                if (movie_number == 0):
                    movie_dict["stage_x"] = mx
                    movie_dict["stage_y"] = my

                if "name" in movie_dict:
                    # Create new block for this movie.
                    movie_block = ElementTree.SubElement(pass_block, "branch")
                    movie_block.set(
                        "name", movie_dict["name"] + " " + str(pass_number) +
                        " " + str(i))
                    movie_dict["name"] += "_" + str(pass_number) + "_" + str(i)

                    for action in da_actions:
                        node = action.createETree(movie_dict)
                        if node is not None:
                            movie_block.append(node)

    # Save to output XML file.
    out_fp = open(generated_file, "w")

    #
    # Thank you StackOverflow..
    # http://stackoverflow.com/questions/17402323/use-xml-etree-elementtree-to-write-out-nicely-formatted-xml-files
    #
    rough_string = ElementTree.tostring(xml_out, 'utf-8')

    reparsed = minidom.parseString(rough_string)
    out_fp.write(reparsed.toprettyxml(indent="  ", encoding="ISO-8859-1"))
    out_fp.close()

    return generated_file
Ejemplo n.º 5
0
    def convertToDaveXMLPrimitives(self, primitives_xml, flat_sequence):
        if self.verbose:
            print "---------------------------------------------------------"
            print "Converting to Dave Primitives"
        
        # Loop over all children
        for child in flat_sequence:
            if child.tag == "branch": # Generate block and call recursively to handle elements in blocks
                branch = ElementTree.SubElement(primitives_xml, "branch")
                branch.attrib["name"] = child.attrib["name"]
                self.convertToDaveXMLPrimitives(branch, child)
            
            elif child.tag == "movie": # Handle <movie> tag
                movie_block = ElementTree.SubElement(primitives_xml, "branch")
                name = child.find("name")

                # Determine name.
                if name is not None:
                    movie_block.set("name", name.text)
                else:
                    movie_block.set("name", "No Name Provided")

                # Determine dictionary
                movie_dict = nodeToDict.movieNodeToDict(child)
                for action in self.movie_da_actions:
                    new_node = action.createETree(movie_dict)
                    if not movie_dict.get("movestage",True) and type(action) is daveActions.DAMoveStage:
                        new_node = None
                    if new_node is not None:
                        movie_block.append(new_node)
            
            elif child.tag == "valve_protocol": # Handle <valve_protocol> tag
                new_node = daveActions.DAValveProtocol().createETree({"name": child.text})
                if new_node is not None:
                    primitives_xml.append(new_node)
                    
            elif child.tag == "delay": # Handle <delay> tag
                new_node = daveActions.DADelay().createETree({"delay": child.text})
                if new_node is not None:
                    primitives_xml.append(new_node)
            elif child.tag == "copy_directory": # Handle <copy_directory> tag
                print "copy_directory"
                source_path = child.find("source_path").text
                target_path = child.find("target_path").text
                delete_source = eval(child.find("delete_source").text)
                dict_ = {"source_path":source_path,"target_path":target_path,"delete_source":delete_source}
                print dict_
                new_node = daveActions.DACopyFolders().createETree(dict_)
                if new_node is not None:
                    primitives_xml.append(new_node)
            elif child.tag == "change_directory": # Handle change_directory tag
                new_node = daveActions.DASetDirectory().createETree({"directory": child.text})
                if new_node is not None:
                    primitives_xml.append(new_node)

            elif child.tag == "clear_warnings": # Handle the clear_warnings tag
                new_node = daveActions.DAClearWarnings().createETree({})
                if new_node is not None:
                    primitives_xml.append(new_node)
            else:
                pass
Ejemplo n.º 6
0
def generate(parent, xml_file, position_file, generated_file):

    directory = os.path.dirname(xml_file)
    pause = True

    # Load position data
    pos_fp = open(position_file, "r")
    x_pos = []
    y_pos = []
    while 1:
        line = pos_fp.readline()
        if not line: break
        [x, y] = line.split(",")
        x_pos.append(float(x))
        y_pos.append(float(y))
    pos_fp.close()

    xml_in = ElementTree.parse(xml_file).getroot()

    # Load "header" info.
    x_offset = nodeToDict.gf("x_offset", [float], 0.0)(xml_in)
    y_offset = nodeToDict.gf("y_offset", [float], 0.0)(xml_in)
    delay = nodeToDict.gf("delay", [int], 0)(xml_in)

    # Create instances of all the supported actions
    # in the order in which they should occur.
    da_actions = [daveActions.DAMoveStage(),
                  daveActions.DASetFocusLockTarget(),
                  daveActions.DAFindSum(),
                  daveActions.DARecenterPiezo(),
                  daveActions.DASetParameters(),
                  daveActions.DASetProgression(),
                  daveActions.DASetDirectory(),
                  daveActions.DADelay(),
                  daveActions.DAPause(),
                  daveActions.DATakeMovie()]

    # Generate output xml tree.
    xml_out = ElementTree.Element("sequence")
    first_movie = True
    for pass_number, pass_node in enumerate([x for x in xml_in if (x.tag == "pass")]):

        # Create a new block for this pass.
        pass_block = ElementTree.SubElement(xml_out, "branch")
        pass_block.set("name", "pass " + str(pass_number))

        for i in range(len(x_pos)):
            mx = x_pos[i] + x_offset
            my = y_pos[i] + y_offset
            
            for movie_number, movie_node in enumerate([x for x in pass_node if (x.tag == "movie")]):

                #
                # Check if we need to get a filename for a power progression.
                #
                # This modifies the original node so that we don't have to keep
                # selecting a filename.
                #
                pnode = movie_node.find("progression")
                if pnode is not None:
                    if (pnode.find("type").text == "file"):
                        if pnode.find("filename") is None:
                            filename = str(QtGui.QFileDialog.getOpenFileName(parent,
                                                                             movie_node.find("name").text + " Power File",
                                                                             directory,
                                                                             "*.power"))
                            directory = os.path.dirname(filename)
                            field = ElementTree.SubElement(pnode, "filename")
                            field.text = filename

                # Create dictionary for node.
                movie_dict = nodeToDict.movieNodeToDict(movie_node)

                # Add extra information to complete the movie node.
                total_delay = delay
                if "delay" in movie_dict:
                    total_delay += movie_dict["delay"]
                if (total_delay > 0):
                    movie_dict["delay"] = total_delay

                if first_movie:
                    movie_dict["pause"] = True
                    first_movie = False

                if (movie_number == 0):
                    movie_dict["stage_x"] = mx
                    movie_dict["stage_y"] = my

                if "name" in movie_dict:
                    # Create new block for this movie.
                    movie_block = ElementTree.SubElement(pass_block, "branch")
                    movie_block.set("name", movie_dict["name"] + " " + str(pass_number) + " " + str(i))
                    movie_dict["name"] += "_" + str(pass_number) + "_" + str(i)

                    for action in da_actions:
                        node = action.createETree(movie_dict)
                        if node is not None:
                            movie_block.append(node)

    # Save to output XML file.
    out_fp = open(generated_file, "w")

    #
    # Thank you StackOverflow..
    # http://stackoverflow.com/questions/17402323/use-xml-etree-elementtree-to-write-out-nicely-formatted-xml-files
    #
    rough_string = ElementTree.tostring(xml_out, 'utf-8')

    reparsed = minidom.parseString(rough_string)
    out_fp.write(reparsed.toprettyxml(indent="  ", encoding = "ISO-8859-1"))
    out_fp.close()

    return generated_file