def __xml__(self,
use_viz=True,
use_dot=True,
output='svg',
figsize=None,
**format):
viz = None
dot = None
if use_viz:
try:
import pygraphviz as viz
except ImportError:
if use_dot:
try:
import pydot as dot
except ImportError:
pass
elif use_dot:
try:
import pydot as dot
except ImportError:
pass
if viz is None and dot is None:
import warnings
if use_viz and use_dot:
msg = "neither pydot nor pygraphviz modules are installed, unable to draw nesting tree"
elif use_viz:
msg = "pygraphviz module not installed, unable to draw nesting tree"
elif use_dot:
msg = "pydot module not installed, unable to draw nesting tree"
else:
msg = "no drawing module used, unable to draw nesting tree"
warnings.warn(msg)
raise NotImplementedError(msg)
if viz is not None:
existing_format_keys = list(format.keys())
for key in existing_format_keys:
if key.upper() != key: format[key.upper()] = format[key]
if 'SUPPRESSGRAPHSIZE' not in format:
if 'GRAPHWIDTH' not in format: format['GRAPHWIDTH'] = 6.5
if 'GRAPHHEIGHT' not in format: format['GRAPHHEIGHT'] = 4
if 'UNAVAILABLE' not in format: format['UNAVAILABLE'] = True
# x = XML_Builder("div", {'class':"nesting_graph larch_art"})
# x.h2("Nesting Structure", anchor=1, attrib={'class':'larch_art_xhtml'})
from io import BytesIO
if 'SUPPRESSGRAPHSIZE' not in format:
G = viz.AGraph(
name='Tree',
directed=True,
size="{GRAPHWIDTH},{GRAPHHEIGHT}".format(**format))
else:
G = viz.AGraph(name='Tree', directed=True)
for n in self.nodes:
nname = self.nodes[n].get('name', n)
if nname == n:
G.add_node(n,
label='<{1}>'.format(n, nname),
style='rounded,solid',
shape='box')
else:
G.add_node(
n,
label='<{1} <FONT COLOR="#999999">({0})</FONT>>'.
format(n, nname),
style='rounded,solid',
shape='box')
eG = G.add_subgraph(name='cluster_elemental',
nbunch=self.elementals,
color='#cccccc',
bgcolor='#eeeeee',
label='Elemental Alternatives',
labelloc='b',
style='rounded,solid')
unavailable_nodes = set()
# if format['UNAVAILABLE']:
# if self.is_provisioned():
# try:
# for n, ncode in enumerate(self.alternative_codes()):
# if numpy.sum(self.Data('Avail'),axis=0)[n,0]==0: unavailable_nodes.add(ncode)
# except: raise
# try:
# legible_avail = not isinstance(self.df.queries.avail, str)
# except:
# legible_avail = False
# if legible_avail:
# for ncode,navail in self.df.queries.avail.items():
# try:
# if navail=='0': unavailable_nodes.add(ncode)
# except: raise
# eG.add_subgraph(name='cluster_elemental_unavailable', nbunch=unavailable_nodes, color='#bbbbbb', bgcolor='#dddddd',
# label='Unavailable Alternatives', labelloc='b', style='rounded,solid')
G.add_node(self.root_id, label="Root")
up_nodes = set()
down_nodes = set()
for i, j in self.edges:
G.add_edge(i, j)
down_nodes.add(j)
up_nodes.add(i)
pyg_imgdata = BytesIO()
try:
G.draw(
pyg_imgdata, format=output,
prog='dot') # write postscript in k5.ps with neato layout
except ValueError as err:
if 'in path' in str(err):
import warnings
warnings.warn(
str(err) + "; unable to draw nesting tree in report")
raise NotImplementedError()
if output == 'svg':
import xml.etree.ElementTree as ET
ET.register_namespace("", "http://www.w3.org/2000/svg")
ET.register_namespace("xlink", "http://www.w3.org/1999/xlink")
return ET.fromstring(pyg_imgdata.getvalue().decode())
else:
raise NotImplementedError(f"output {output} with use_viz")
else:
pydot = dot
# set Graphviz graph type
if self.is_directed():
graph_type = 'digraph'
else:
graph_type = 'graph'
strict = nx.number_of_selfloops(
self) == 0 and not self.is_multigraph()
name = self.name
graph_defaults = self.graph.get('graph', {})
if name == '':
P = pydot.Dot('',
graph_type=graph_type,
strict=strict,
**graph_defaults)
else:
P = pydot.Dot('"%s"' % name,
graph_type=graph_type,
strict=strict,
**graph_defaults)
try:
P.set_node_defaults(**self.graph['node'])
except KeyError:
pass
try:
P.set_edge_defaults(**self.graph['edge'])
except KeyError:
pass
cluster_elemental = pydot.Cluster(
'elemental',
style='rounded',
bgcolor='lightgrey',
color='white',
rank='same',
rankdir="LR",
)
for n, nodedata in self.nodes(data=True):
str_nodedata = dict(
(k if k != 'name' else 'name_', '"' + str(v) + '"')
for k, v in nodedata.items())
if 'parameter' in nodedata:
param_label = '<BR ALIGN="CENTER" /><FONT COLOR="#999999" POINT-SIZE="9"><I>{0}</I></FONT>'.format(
nodedata['parameter'])
else:
param_label = ''
if 'name' in nodedata and n != self.root_id:
name = nodedata['name']
str_nodedata['label'] = '<' \
'<FONT COLOR="#999999" POINT-SIZE="9">({1}) </FONT>' \
'{0}' \
'{2}>'.format(name,n,param_label)
# Default styling for nodes can have been overridden
if n in self.elementals:
str_nodedata['style'] = str_nodedata.get('style', 'filled')
str_nodedata['fillcolor'] = str_nodedata.get(
'fillcolor', 'white')
elif n == self.root_id:
str_nodedata['shape'] = str_nodedata.get(
'shape', 'invhouse')
else:
str_nodedata['style'] = str_nodedata.get(
'style', 'rounded')
str_nodedata['shape'] = str_nodedata.get(
'shape', 'rectangle')
p = pydot.Node(str(n), **str_nodedata)
P.add_node(p)
if n in self.elementals:
cluster_elemental.add_node(p)
P.add_subgraph(cluster_elemental)
if self.is_multigraph():
for u, v, key, edgedata in self.edges(data=True, keys=True):
str_edgedata = dict((k, str(v_))
for k, v_ in edgedata.items()
if k != 'key')
if v in self.elementals:
str_edgedata['constraint'] = 'false'
edge = pydot.Edge(str(u),
str(v),
key=str(key),
**str_edgedata)
P.add_edge(edge)
else:
for u, v, edgedata in self.edges(data=True):
str_edgedata = dict(
(k, '"' + str(v) + '"') for k, v in edgedata.items())
edge = pydot.Edge(str(u), str(v), **str_edgedata)
P.add_edge(edge)
###
from xmle import Elem
prog = None
if output == 'svg':
import xml.etree.ElementTree as ET
ET.register_namespace("", "http://www.w3.org/2000/svg")
ET.register_namespace("xlink", "http://www.w3.org/1999/xlink")
elif output == 'png':
prog = [P.prog, '-Gdpi=300']
if figsize is not None:
prog.append(f"-Gsize={figsize[0]},{figsize[1]}\!")
e = Elem.from_any(P.create(prog=prog, format=output, **format))
e.attrib['dpi'] = (300, 300)
return e
return Elem.from_any(P.create(prog=prog, format=output, **format))
def __xml__(self, **format):
viz = None
dot = None
try:
import pygraphviz as viz
except ImportError:
try:
import pydot as dot
except ImportError:
pass
if viz is None and dot is None:
import warnings
warnings.warn(
"pygraphviz module not installed, unable to draw nesting tree")
raise NotImplementedError(
"pygraphviz module not installed, unable to draw nesting tree")
if viz is not None:
existing_format_keys = list(format.keys())
for key in existing_format_keys:
if key.upper() != key: format[key.upper()] = format[key]
if 'SUPPRESSGRAPHSIZE' not in format:
if 'GRAPHWIDTH' not in format: format['GRAPHWIDTH'] = 6.5
if 'GRAPHHEIGHT' not in format: format['GRAPHHEIGHT'] = 4
if 'UNAVAILABLE' not in format: format['UNAVAILABLE'] = True
# x = XML_Builder("div", {'class':"nesting_graph larch_art"})
# x.h2("Nesting Structure", anchor=1, attrib={'class':'larch_art_xhtml'})
from io import BytesIO
if 'SUPPRESSGRAPHSIZE' not in format:
G = viz.AGraph(
name='Tree',
directed=True,
size="{GRAPHWIDTH},{GRAPHHEIGHT}".format(**format))
else:
G = viz.AGraph(name='Tree', directed=True)
for n in self.nodes:
nname = self.nodes[n].get('name', n)
if nname == n:
G.add_node(n,
label='<{1}>'.format(n, nname),
style='rounded,solid',
shape='box')
else:
G.add_node(
n,
label='<{1} <FONT COLOR="#999999">({0})</FONT>>'.
format(n, nname),
style='rounded,solid',
shape='box')
eG = G.add_subgraph(name='cluster_elemental',
nbunch=self.elementals,
color='#cccccc',
bgcolor='#eeeeee',
label='Elemental Alternatives',
labelloc='b',
style='rounded,solid')
unavailable_nodes = set()
# if format['UNAVAILABLE']:
# if self.is_provisioned():
# try:
# for n, ncode in enumerate(self.alternative_codes()):
# if numpy.sum(self.Data('Avail'),axis=0)[n,0]==0: unavailable_nodes.add(ncode)
# except: raise
# try:
# legible_avail = not isinstance(self.df.queries.avail, str)
# except:
# legible_avail = False
# if legible_avail:
# for ncode,navail in self.df.queries.avail.items():
# try:
# if navail=='0': unavailable_nodes.add(ncode)
# except: raise
# eG.add_subgraph(name='cluster_elemental_unavailable', nbunch=unavailable_nodes, color='#bbbbbb', bgcolor='#dddddd',
# label='Unavailable Alternatives', labelloc='b', style='rounded,solid')
G.add_node(self.root_id, label="Root")
up_nodes = set()
down_nodes = set()
for i, j in self.edges:
G.add_edge(i, j)
down_nodes.add(j)
up_nodes.add(i)
pyg_imgdata = BytesIO()
try:
G.draw(
pyg_imgdata, format='svg',
prog='dot') # write postscript in k5.ps with neato layout
except ValueError as err:
if 'in path' in str(err):
import warnings
warnings.warn(
str(err) + "; unable to draw nesting tree in report")
raise NotImplementedError()
import xml.etree.ElementTree as ET
ET.register_namespace("", "http://www.w3.org/2000/svg")
ET.register_namespace("xlink", "http://www.w3.org/1999/xlink")
return ET.fromstring(pyg_imgdata.getvalue().decode())
else:
N = self
pydot = dot
# set Graphviz graph type
if N.is_directed():
graph_type = 'digraph'
else:
graph_type = 'graph'
strict = nx.number_of_selfloops(N) == 0 and not N.is_multigraph()
name = N.name
graph_defaults = N.graph.get('graph', {})
if name is '':
P = pydot.Dot('',
graph_type=graph_type,
strict=strict,
**graph_defaults)
else:
P = pydot.Dot('"%s"' % name,
graph_type=graph_type,
strict=strict,
**graph_defaults)
try:
P.set_node_defaults(**N.graph['node'])
except KeyError:
pass
try:
P.set_edge_defaults(**N.graph['edge'])
except KeyError:
pass
for n, nodedata in N.nodes(data=True):
str_nodedata = dict((k if k != 'name' else 'name_', str(v))
for k, v in nodedata.items())
p = pydot.Node(str(n), **str_nodedata)
P.add_node(p)
if N.is_multigraph():
for u, v, key, edgedata in N.edges(data=True, keys=True):
str_edgedata = dict(
(k, str(v)) for k, v in edgedata.items() if k != 'key')
edge = pydot.Edge(str(u),
str(v),
key=str(key),
**str_edgedata)
P.add_edge(edge)
else:
for u, v, edgedata in N.edges(data=True):
str_edgedata = dict(
(k, str(v)) for k, v in edgedata.items())
edge = pydot.Edge(str(u), str(v), **str_edgedata)
P.add_edge(edge)
###
from xmle import Elem
return Elem.from_any(P.create_svg())