def test_filtering(self):
tmpdir = tempfile.mkdtemp()
get('{}_..._MR01'.format(self.test_proj), tmpdir,
with_scans=['two'], without_scans=['source'])
matching = ['{}_{:03}_MR01'.format(self.test_proj, i)
for i in (3, 4, 5)]
self.assertEqual(sorted(os.listdir(tmpdir)), matching)
shutil.rmtree(tmpdir)
def test_filtering(self):
get('{}_..._MR01'.format(self.test_proj),
self.tmpdir,
with_scans=['two'],
without_scans=['source'],
project_id=self.test_proj)
matching = [
'{}_{:03}_MR01'.format(self.test_proj, i) for i in (3, 4, 5)
]
self.assertEqual(sorted(os.listdir(self.tmpdir)), matching)
def test_select_scans(self):
tmpdir = tempfile.mkdtemp()
get(self.test_proj, tmpdir,
with_scans=['source'], scans=['source'])
matching = ['{}_{:03}_MR01'.format(self.test_proj, i)
for i in (1, 2, 6)]
self.assertEqual(sorted(os.listdir(tmpdir)), matching)
for d in matching:
self.assertEqual(os.listdir(os.path.join(tmpdir, d)),
['source-source.nii.gz'])
shutil.rmtree(tmpdir)
def test_select_scans(self):
get(self.test_proj,
self.tmpdir,
with_scans=['source'],
scans=['source'])
matching = [
'{}_{:03}_MR01'.format(self.test_proj, i) for i in (1, 2, 6)
]
self.assertEqual(sorted(os.listdir(self.tmpdir)), matching)
for d in matching:
self.assertEqual(os.listdir(os.path.join(self.tmpdir, d)),
['source-source.nii.gz'])
def test_no_scan_id(self):
self.tmpdir = tempfile.mkdtemp()
get('MMH008_CON007_MRPT01', self.tmpdir, scans='JPG_.*')
get('MMH008_CON007_MRPT01', self.tmpdir, scans='Localiser')
print(os.listdir(os.path.join(self.tmpdir, 'MMH008_CON007_MRPT01')))
def test_secondary(self):
get('MRH084_025_MR01', self.tmpdir)
print(os.listdir(os.path.join(self.tmpdir, 'MRH084_025_MR01')))
print('done')
def test_non_dicom(self):
get('MRH017_100_MR01', self.tmpdir)
print(os.listdir(os.path.join(self.tmpdir, 'MRH017_100_MR01')))
print('done')
def test_get(self):
get(self.test_proj, self.tmpdir, subject_dirs=True)
self.assertEqual(sorted(os.listdir(self.tmpdir)), self._subjects)
def test_secondary(self):
tmpdir = tempfile.mkdtemp()
get('MRH084_025_MR01', tmpdir)
print(os.listdir(os.path.join(tmpdir, 'MRH084_025_MR01')))
print('done')
def test_non_dicom(self):
tmpdir = tempfile.mkdtemp()
get('MRH017_100_MR01', tmpdir)
print(os.listdir(os.path.join(tmpdir, 'MRH017_100_MR01')))
print('done')
def test_get(self):
tmpdir = tempfile.mkdtemp()
get(self.test_proj, tmpdir, subject_dirs=True)
self.assertEqual(sorted(os.listdir(tmpdir)), self._subjects)
shutil.rmtree(tmpdir)