def prepare_STAGE2_job_queue(target_pkgs, pkg_deps_list, installed_pkgs):
print "BBS> Preparing STAGE2 job queue ... ",
stage = 'install'
jobs = []
nb_target_pkgs_in_queue = nb_skipped_pkgs = 0
for pkg in pkg_deps_list.keys():
version = None
pkgdumps_prefix = pkg + '.' + stage
pkgdumps = BBSbase.PkgDumps(None, pkgdumps_prefix)
if pkg in target_pkgs:
try:
version = bbs.parse.getVersionFromDir(pkg)
except IOError:
print "BBS> Can't read %s/DESCRIPTION file!" % pkg
cmd = BBSbase.getSTAGE2cmd(pkg, version)
nb_target_pkgs_in_queue += 1
else:
if pkg in installed_pkgs:
cmd = pkgdumps = None
nb_skipped_pkgs += 1
else:
cmd = BBSbase.getSTAGE2cmdForNonTargetPkg(pkg)
job = BBSbase.InstallPkg_Job(pkg, version, cmd,
pkgdumps, BBSvars.install_rdir)
jobs.append(job)
nb_jobs = len(jobs)
print "OK"
nb_not_needed = len(target_pkgs) - nb_target_pkgs_in_queue
nb_non_target_pkgs_in_queue = nb_jobs - nb_target_pkgs_in_queue
nb_non_target_pkgs_to_install = nb_non_target_pkgs_in_queue - \
nb_skipped_pkgs
nb_pkgs_to_install = nb_jobs - nb_skipped_pkgs
print "BBS> Job summary:"
print "BBS> | %d (out of %d) target pkgs are not supporting pkgs" % \
(nb_not_needed, len(target_pkgs))
print "BBS> | => no need to install them"
print "BBS> | => they're not going in the installation queue"
print "BBS> | %d pkgs in the installation queue (all supporting pkgs):" % \
nb_jobs
print "BBS> | o %d are target pkgs" % nb_target_pkgs_in_queue
print "BBS> | => will (re-)install them with 'R CMD INSTALL'"
print "BBS> | o %d are non-target pkgs:" % nb_non_target_pkgs_in_queue
print "BBS> | - %d are already installed" % nb_skipped_pkgs
print "BBS> | => won't re-install them (job will be skipped)"
print "BBS> | - %d are not already installed" % \
nb_non_target_pkgs_to_install
print "BBS> | => will install them with"
print "BBS> | install.packages(pkg, repos=non_target_repos,"
print "BBS> | dep=FALSE, ...)"
print "BBS> | Total nb of packages to install: %d" % nb_pkgs_to_install
print "BBS>"
job_queue = bbs.jobs.JobQueue(stage, jobs, pkg_deps_list)
job_queue._nb_pkgs_to_install = nb_pkgs_to_install
return job_queue
def prepare_STAGE2_job_queue(target_pkgs, pkg_dep_graph, installed_pkgs,
out_dir):
print('BBS> Preparing STAGE2 job queue ...', end=' ')
sys.stdout.flush()
stage = 'install'
jobs = []
nb_target_pkgs_in_queue = nb_skipped_pkgs = 0
for pkg in pkg_dep_graph.keys():
version = None
pkgdumps_prefix = pkg + '.' + stage
pkgdumps = BBSbase.PkgDumps(None, pkgdumps_prefix)
if pkg in target_pkgs:
version = bbs.parse.get_Version_from_pkgsrctree(pkg)
cmd = BBSbase.getSTAGE2cmd(pkg, version)
nb_target_pkgs_in_queue += 1
else:
if pkg in installed_pkgs:
cmd = pkgdumps = None
nb_skipped_pkgs += 1
else:
cmd = BBSbase.get_install_cmd_for_non_target_pkg(pkg)
job = BBSbase.InstallPkg_Job(pkg, version, cmd, pkgdumps, out_dir)
jobs.append(job)
nb_jobs = len(jobs)
print('OK')
sys.stdout.flush()
nb_not_needed = len(target_pkgs) - nb_target_pkgs_in_queue
nb_non_target_pkgs_in_queue = nb_jobs - nb_target_pkgs_in_queue
nb_non_target_pkgs_to_install = nb_non_target_pkgs_in_queue - \
nb_skipped_pkgs
nb_pkgs_to_install = nb_jobs - nb_skipped_pkgs
print('BBS> Job summary:')
print('BBS> | %d (out of %d) target pkgs are not supporting pkgs' % \
(nb_not_needed, len(target_pkgs)))
print('BBS> | => no need to install them')
print('BBS> | => they\'re not going in the installation queue')
print('BBS> | %d pkgs in the installation queue (all supporting pkgs):' % \
nb_jobs)
print('BBS> | o %d are target pkgs' % nb_target_pkgs_in_queue)
print('BBS> | => will (re-)install them with \'R CMD INSTALL\'')
print('BBS> | o %d are non-target pkgs:' % nb_non_target_pkgs_in_queue)
print('BBS> | - %d are already installed' % nb_skipped_pkgs)
print('BBS> | => won\'t re-install them (job will be skipped)')
print('BBS> | - %d are not already installed' % \
nb_non_target_pkgs_to_install)
print('BBS> | => will install them with')
print('BBS> | install.packages(pkg, repos=non_target_repos,')
print('BBS> | dep=FALSE, ...)')
print('BBS> | Total nb of packages to install: %d' % nb_pkgs_to_install)
print('BBS>')
job_queue = bbs.jobs.JobQueue(stage, jobs, pkg_dep_graph)
job_queue._nb_pkgs_to_install = nb_pkgs_to_install
return job_queue
def STAGE2_loop(target_pkgs, pkg_deps_list, installed_pkgs, nb_cpu):
print "BBS> Preparing STAGE2 job queue ...",
job_queue = []
nb_target_pkgs_in_queue = nb_skipped_pkgs = 0
for pkg in pkg_deps_list.keys():
version = None
pkgdumps_prefix = pkg + '.install'
pkgdumps = BBSbase.PkgDumps(None, pkgdumps_prefix)
if pkg in target_pkgs:
try:
version = bbs.parse.getVersionFromDir(pkg)
except IOError:
print "BBS> Can't read DESCRIPTION file!"
cmd = BBSbase.getSTAGE2cmd(pkg, version)
nb_target_pkgs_in_queue += 1
else:
if pkg in installed_pkgs:
cmd = pkgdumps = None
nb_skipped_pkgs += 1
else:
cmd = BBSbase.getSTAGE2cmdForNonTargetPkg(pkg)
job = BBSbase.InstallPkg_Job(pkg, version, cmd,
pkgdumps, BBSvars.install_rdir)
job_queue.append(job)
nb_jobs = len(job_queue)
print "OK"
nb_not_needed = len(target_pkgs) - nb_target_pkgs_in_queue
nb_non_target_pkgs_in_queue = nb_jobs - nb_target_pkgs_in_queue
nb_non_target_pkgs_to_install = nb_non_target_pkgs_in_queue - \
nb_skipped_pkgs
nb_pkgs_to_install = nb_jobs - nb_skipped_pkgs
print "BBS> Job summary:"
print "BBS> | %d (out of %d) target pkgs are not supporting pkgs" % \
(nb_not_needed, len(target_pkgs))
print "BBS> | => no need to install them"
print "BBS> | => they're not going in the installation queue"
print "BBS> | %d pkgs in the installation queue (all supporting pkgs):" % \
nb_jobs
print "BBS> | o %d are target pkgs" % nb_target_pkgs_in_queue
print "BBS> | => will (re-)install them with 'R CMD INSTALL'"
print "BBS> | o %d are non-target pkgs:" % nb_non_target_pkgs_in_queue
print "BBS> | - %d are already installed" % nb_skipped_pkgs
print "BBS> | => won't re-install them (job will be skipped)"
print "BBS> | - %d are not already installed" % \
nb_non_target_pkgs_to_install
print "BBS> | => will install them with"
print "BBS> | install.packages(pkg, repos=non_target_repos,"
print "BBS> | dep=FALSE, ...)"
print "BBS> | Total nb of packages to install: %d" % nb_pkgs_to_install
print "BBS>"
print "BBS> BEGIN STAGE2 loop."
t0 = time.time()
nb_installed = bbs.jobs.processJobQueue(job_queue, pkg_deps_list, nb_cpu,
BBScorevars.r_cmd_timeout, True)
dt = time.time() - t0
print "BBS> END STAGE2 loop."
nb_failures = nb_pkgs_to_install - nb_installed
print "BBS> -------------------------------------------------------------"
print "BBS> STAGE2 SUMMARY:"
print "BBS> o Working dir: %s" % os.getcwd()
print "BBS> o %d pkg dir(s) queued and processed" % nb_jobs
print "BBS> o %d pkg(s) to (re-)install: %d successes / %d failures" % \
(nb_pkgs_to_install, nb_installed, nb_failures)
print "BBS> o Total time: %.2f seconds" % dt
print "BBS> -------------------------------------------------------------"
return
def STAGE2_loop(target_pkgs, pkg_deps_list, installed_pkgs, nb_cpu):
print "BBS> Preparing STAGE2 job queue ...",
job_queue = []
nb_target_pkgs_in_queue = nb_skipped_pkgs = 0
for pkg in pkg_deps_list.keys():
version = None
pkgdumps_prefix = pkg + '.install'
pkgdumps = BBSbase.PkgDumps(None, pkgdumps_prefix)
if pkg in target_pkgs:
try:
version = bbs.parse.getVersionFromDir(pkg)
except IOError:
print "BBS> Can't read DESCRIPTION file!"
cmd = BBSbase.getSTAGE2cmd(pkg, version)
nb_target_pkgs_in_queue += 1
else:
if pkg in installed_pkgs:
cmd = pkgdumps = None
nb_skipped_pkgs += 1
else:
cmd = BBSbase.getSTAGE2cmdForNonTargetPkg(pkg)
job = BBSbase.InstallPkg_Job(pkg, version, cmd, pkgdumps,
BBSvars.install_rdir)
job_queue.append(job)
nb_jobs = len(job_queue)
print "OK"
nb_not_needed = len(target_pkgs) - nb_target_pkgs_in_queue
nb_non_target_pkgs_in_queue = nb_jobs - nb_target_pkgs_in_queue
nb_non_target_pkgs_to_install = nb_non_target_pkgs_in_queue - \
nb_skipped_pkgs
nb_pkgs_to_install = nb_jobs - nb_skipped_pkgs
print "BBS> Job summary:"
print "BBS> | %d (out of %d) target pkgs are not supporting pkgs" % \
(nb_not_needed, len(target_pkgs))
print "BBS> | => no need to install them"
print "BBS> | => they're not going in the installation queue"
print "BBS> | %d pkgs in the installation queue (all supporting pkgs):" % \
nb_jobs
print "BBS> | o %d are target pkgs" % nb_target_pkgs_in_queue
print "BBS> | => will (re-)install them with 'R CMD INSTALL'"
print "BBS> | o %d are non-target pkgs:" % nb_non_target_pkgs_in_queue
print "BBS> | - %d are already installed" % nb_skipped_pkgs
print "BBS> | => won't re-install them (job will be skipped)"
print "BBS> | - %d are not already installed" % \
nb_non_target_pkgs_to_install
print "BBS> | => will install them with"
print "BBS> | install.packages(pkg, repos=non_target_repos,"
print "BBS> | dep=FALSE, ...)"
print "BBS> | Total nb of packages to install: %d" % nb_pkgs_to_install
print "BBS>"
print "BBS> BEGIN STAGE2 loop."
t0 = time.time()
nb_installed = bbs.jobs.processJobQueue(job_queue, pkg_deps_list, nb_cpu,
BBScorevars.r_cmd_timeout, True)
dt = time.time() - t0
print "BBS> END STAGE2 loop."
nb_failures = nb_pkgs_to_install - nb_installed
print "BBS> -------------------------------------------------------------"
print "BBS> STAGE2 SUMMARY:"
print "BBS> o Working dir: %s" % os.getcwd()
print "BBS> o %d pkg dir(s) queued and processed" % nb_jobs
print "BBS> o %d pkg(s) to (re-)install: %d successes / %d failures" % \
(nb_pkgs_to_install, nb_installed, nb_failures)
print "BBS> o Total time: %.2f seconds" % dt
print "BBS> -------------------------------------------------------------"
return
